[DATALAD RUNCMD] Compute SWU_4/sub-0025788/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025788/ses-2/anat/sub-0025788_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025788/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025788/ses-2/label/catROI_sub-0025788_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q4/4G/MD5E-s61212--2db06a17f1a3792afdde767b53c29550.mat/MD5E-s61212--2db06a17f1a3792afdde767b53c29550.mat

SWU_4/sub-0025788/ses-2/label/catROI_sub-0025788_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jp/3G/MD5E-s188734--b7e7f0628c8b2c42ce6e623f714e5786.xml/MD5E-s188734--b7e7f0628c8b2c42ce6e623f714e5786.xml

SWU_4/sub-0025788/ses-2/label/catROIs_sub-0025788_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WF/Zx/MD5E-s120089--d763c76283a06f73029f1c6ecdc1e6b5.mat/MD5E-s120089--d763c76283a06f73029f1c6ecdc1e6b5.mat

SWU_4/sub-0025788/ses-2/label/catROIs_sub-0025788_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jm/WF/MD5E-s332075--0ebfb2658ffaf8e2089f0cff74d64241.xml/MD5E-s332075--0ebfb2658ffaf8e2089f0cff74d64241.xml

SWU_4/sub-0025788/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025788_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025788/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q5/w4/MD5E-s162478--c32b7d55fa1cfe5e8f36254014abad1d.nii.gz/MD5E-s162478--c32b7d55fa1cfe5e8f36254014abad1d.nii.gz

SWU_4/sub-0025788/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025788_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025788/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zJ/mG/MD5E-s180732--501a12188b1165049572105fca4e5884.nii.gz/MD5E-s180732--501a12188b1165049572105fca4e5884.nii.gz

SWU_4/sub-0025788/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025788_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025788/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9K/FK/MD5E-s247582--b044b90f2ca52388e31fff680170169f.nii.gz/MD5E-s247582--b044b90f2ca52388e31fff680170169f.nii.gz

SWU_4/sub-0025788/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025788_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025788/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7g/6m/MD5E-s273324--993a365e5036d8854499b4a5cd546574.nii.gz/MD5E-s273324--993a365e5036d8854499b4a5cd546574.nii.gz

SWU_4/sub-0025788/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025788_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025788/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5V/2G/MD5E-s24821--af2ad6442ad1644d75f2a95321256663.nii.gz/MD5E-s24821--af2ad6442ad1644d75f2a95321256663.nii.gz

SWU_4/sub-0025788/ses-2/mri/aal3_sub-0025788_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025788/ses-2/mri/aal3_sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wm/PJ/MD5E-s182429--d3dac274b82c72d7ad12b30c084d928d.nii.gz/MD5E-s182429--d3dac274b82c72d7ad12b30c084d928d.nii.gz

SWU_4/sub-0025788/ses-2/mri/anatomy3_sub-0025788_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025788/ses-2/mri/anatomy3_sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pm/ZJ/MD5E-s133600--9d7bc208e8cd1b1b989d790d1920029e.nii.gz/MD5E-s133600--9d7bc208e8cd1b1b989d790d1920029e.nii.gz

SWU_4/sub-0025788/ses-2/mri/anon_misub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xx/1m/MD5E-s10737951--8ffb7c73e690d10f09cf9b380c1d7806.nii.gz/MD5E-s10737951--8ffb7c73e690d10f09cf9b380c1d7806.nii.gz

SWU_4/sub-0025788/ses-2/mri/anon_msub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fm/pJ/MD5E-s11678093--c9c865fa9e311689b92a19c423a3128f.nii.gz/MD5E-s11678093--c9c865fa9e311689b92a19c423a3128f.nii.gz

SWU_4/sub-0025788/ses-2/mri/cat_sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qZ/6z/MD5E-s97773--0876751d91ef3a8d146fdee36053521d.nii.gz/MD5E-s97773--0876751d91ef3a8d146fdee36053521d.nii.gz

SWU_4/sub-0025788/ses-2/mri/cobra_sub-0025788_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025788/ses-2/mri/cobra_sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gw/1x/MD5E-s47364--8fd3d155cef5fd5ce8de13062871c423.nii.gz/MD5E-s47364--8fd3d155cef5fd5ce8de13062871c423.nii.gz

SWU_4/sub-0025788/ses-2/mri/hammers_sub-0025788_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025788/ses-2/mri/hammers_sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gw/q5/MD5E-s145213--327d6ab81c4dd963b40c9d64629898d9.nii.gz/MD5E-s145213--327d6ab81c4dd963b40c9d64629898d9.nii.gz

SWU_4/sub-0025788/ses-2/mri/ibsr_sub-0025788_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025788/ses-2/mri/ibsr_sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/14/zM/MD5E-s150975--dc0b706fa14ba0415b16fc4d87b1e416.nii.gz/MD5E-s150975--dc0b706fa14ba0415b16fc4d87b1e416.nii.gz

SWU_4/sub-0025788/ses-2/mri/it_sub-0025788_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gq/P5/MD5E-s284--9152f79c41f40ed6e11bf44c130a9113.mat/MD5E-s284--9152f79c41f40ed6e11bf44c130a9113.mat

SWU_4/sub-0025788/ses-2/mri/it_sub-0025788_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qV/kk/MD5E-s284--c03aa5757b6b7f08ee431f90bb7326cc.mat/MD5E-s284--c03aa5757b6b7f08ee431f90bb7326cc.mat

SWU_4/sub-0025788/ses-2/mri/iy_sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6V/mW/MD5E-s44629063--279dbc9401fc509e7ea7512deba8eff9.nii.gz/MD5E-s44629063--279dbc9401fc509e7ea7512deba8eff9.nii.gz

SWU_4/sub-0025788/ses-2/mri/julichbrain_sub-0025788_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025788/ses-2/mri/julichbrain_sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/49/M3/MD5E-s195108--5d13c50ef4e53221134a56a2c1f6e720.nii.gz/MD5E-s195108--5d13c50ef4e53221134a56a2c1f6e720.nii.gz

SWU_4/sub-0025788/ses-2/mri/lpba40_sub-0025788_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025788/ses-2/mri/lpba40_sub-0025788_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/5J/fm/MD5E-s141650--3ac783e56f087ac17e1d30cb33cbb905.nii.gz/MD5E-s141650--3ac783e56f087ac17e1d30cb33cbb905.nii.gz

SWU_4/sub-0025788/ses-2/mri/m0wp1sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x6/2z/MD5E-s2583081--9718f3f8981bc0976c3ca31084e44f84.nii.gz/MD5E-s2583081--9718f3f8981bc0976c3ca31084e44f84.nii.gz

SWU_4/sub-0025788/ses-2/mri/m0wp2sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qw/qJ/MD5E-s2314545--359f8ed1c829b21d2a5f56805c58b41b.nii.gz/MD5E-s2314545--359f8ed1c829b21d2a5f56805c58b41b.nii.gz

SWU_4/sub-0025788/ses-2/mri/m0wp3sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wG/j5/MD5E-s2557246--7ed6652c970fd0563898e7b2cb90f918.nii.gz/MD5E-s2557246--7ed6652c970fd0563898e7b2cb90f918.nii.gz

SWU_4/sub-0025788/ses-2/mri/mori_sub-0025788_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025788/ses-2/mri/mori_sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z1/21/MD5E-s169622--73ddabe185cdd57ec6d412036ced0a5e.nii.gz/MD5E-s169622--73ddabe185cdd57ec6d412036ced0a5e.nii.gz

SWU_4/sub-0025788/ses-2/mri/mwp1sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025788/ses-2/mri/mwp2sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WX/F2/MD5E-s2316415--d900e0165f49953b46a107725eb96211.nii.gz/MD5E-s2316415--d900e0165f49953b46a107725eb96211.nii.gz

SWU_4/sub-0025788/ses-2/mri/mwp3sub-0025788_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025788/ses-2/mri/neuromorphometrics_sub-0025788_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025788/ses-2/mri/neuromorphometrics_sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025788/ses-2/mri/p0sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/46/MD5E-s629921--1c7f5488ab5b2a9f4ee1df0d29f07de3.nii.gz/MD5E-s629921--1c7f5488ab5b2a9f4ee1df0d29f07de3.nii.gz

SWU_4/sub-0025788/ses-2/mri/p1sub-0025788_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025788/ses-2/mri/p2sub-0025788_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025788/ses-2/mri/p3sub-0025788_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025788/ses-2/mri/rp1sub-0025788_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025788/ses-2/mri/rp2sub-0025788_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025788/ses-2/mri/rp3sub-0025788_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025788/ses-2/mri/t_sub-0025788_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025788/ses-2/mri/t_sub-0025788_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025788/ses-2/mri/thalamus_sub-0025788_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025788/ses-2/mri/thalamus_sub-0025788_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025788/ses-2/mri/wj_sub-0025788_ses-2_run-1_T1w.nii.gz

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