[DATALAD RUNCMD] Compute SWU_4/sub-0025716/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025716/ses-1/anat/sub-0025716_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025716/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025716/ses-1/label/catROI_sub-0025716_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mq/F3/MD5E-s58148--0648e77c1efeddde7dcf30a060e91abc.mat/MD5E-s58148--0648e77c1efeddde7dcf30a060e91abc.mat

SWU_4/sub-0025716/ses-1/label/catROI_sub-0025716_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wz/wq/MD5E-s188510--a880c4fb54e5f4445ae1297fc5ca01d2.xml/MD5E-s188510--a880c4fb54e5f4445ae1297fc5ca01d2.xml

SWU_4/sub-0025716/ses-1/label/catROIs_sub-0025716_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0w/Xz/MD5E-s119922--3c9e04c33a3026fe5410abd5824fe59e.mat/MD5E-s119922--3c9e04c33a3026fe5410abd5824fe59e.mat

SWU_4/sub-0025716/ses-1/label/catROIs_sub-0025716_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xZ/QF/MD5E-s332144--94b1920701fa63bfac220939c7220e46.xml/MD5E-s332144--94b1920701fa63bfac220939c7220e46.xml

SWU_4/sub-0025716/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025716_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025716/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J4/VF/MD5E-s180005--ea07b0459c9696092b79835c41362da4.nii.gz/MD5E-s180005--ea07b0459c9696092b79835c41362da4.nii.gz

SWU_4/sub-0025716/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025716_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025716/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MW/2X/MD5E-s201809--440eed38d797df39ffe0170b41a6dfb7.nii.gz/MD5E-s201809--440eed38d797df39ffe0170b41a6dfb7.nii.gz

SWU_4/sub-0025716/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025716_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025716/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P8/03/MD5E-s271504--765e0b272c7b59250e14a2a8684f2ea0.nii.gz/MD5E-s271504--765e0b272c7b59250e14a2a8684f2ea0.nii.gz

SWU_4/sub-0025716/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025716_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025716/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8p/v7/MD5E-s301664--d4d11b3917cc439e9e0af7e0a5a5cb30.nii.gz/MD5E-s301664--d4d11b3917cc439e9e0af7e0a5a5cb30.nii.gz

SWU_4/sub-0025716/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025716_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025716/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5w/g2/MD5E-s25931--208b29f1149fc8b63ec1a1467d6bb50d.nii.gz/MD5E-s25931--208b29f1149fc8b63ec1a1467d6bb50d.nii.gz

SWU_4/sub-0025716/ses-1/mri/aal3_sub-0025716_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025716/ses-1/mri/aal3_sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qK/P6/MD5E-s204079--67f527678188b2fea16d61bfa9cca85c.nii.gz/MD5E-s204079--67f527678188b2fea16d61bfa9cca85c.nii.gz

SWU_4/sub-0025716/ses-1/mri/anatomy3_sub-0025716_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025716/ses-1/mri/anatomy3_sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZV/qx/MD5E-s148290--ba221c2cd9ce54cc5b3ef9cf69e4b56b.nii.gz/MD5E-s148290--ba221c2cd9ce54cc5b3ef9cf69e4b56b.nii.gz

SWU_4/sub-0025716/ses-1/mri/anon_misub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wJ/9v/MD5E-s9735323--c03c6e473312cc5bcd1de9b46477c48d.nii.gz/MD5E-s9735323--c03c6e473312cc5bcd1de9b46477c48d.nii.gz

SWU_4/sub-0025716/ses-1/mri/anon_msub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KJ/kW/MD5E-s11042017--7d9d1813174aa6c7a58fb250daad8fe4.nii.gz/MD5E-s11042017--7d9d1813174aa6c7a58fb250daad8fe4.nii.gz

SWU_4/sub-0025716/ses-1/mri/cat_sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VG/Gw/MD5E-s107387--f2705e6dfa5cf36d15d38bd47afce84a.nii.gz/MD5E-s107387--f2705e6dfa5cf36d15d38bd47afce84a.nii.gz

SWU_4/sub-0025716/ses-1/mri/cobra_sub-0025716_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025716/ses-1/mri/cobra_sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vj/9x/MD5E-s50663--32ed597057b2dfd10d6ac1b83fcb62cb.nii.gz/MD5E-s50663--32ed597057b2dfd10d6ac1b83fcb62cb.nii.gz

SWU_4/sub-0025716/ses-1/mri/hammers_sub-0025716_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025716/ses-1/mri/hammers_sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vk/0F/MD5E-s159870--f159a4835eddb4b367edf27f57016162.nii.gz/MD5E-s159870--f159a4835eddb4b367edf27f57016162.nii.gz

SWU_4/sub-0025716/ses-1/mri/ibsr_sub-0025716_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025716/ses-1/mri/ibsr_sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/31/jw/MD5E-s167749--dfb16e3973c6d9f4900083df7773c80a.nii.gz/MD5E-s167749--dfb16e3973c6d9f4900083df7773c80a.nii.gz

SWU_4/sub-0025716/ses-1/mri/it_sub-0025716_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xq/4z/MD5E-s282--87a1cdff7d3e806780c6ee83e4fb007e.mat/MD5E-s282--87a1cdff7d3e806780c6ee83e4fb007e.mat

SWU_4/sub-0025716/ses-1/mri/it_sub-0025716_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fK/5q/MD5E-s283--4f985ee4d2bcb627445b804e7586f9a8.mat/MD5E-s283--4f985ee4d2bcb627445b804e7586f9a8.mat

SWU_4/sub-0025716/ses-1/mri/iy_sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mV/xV/MD5E-s52524738--b14fee80e28be98cfdaa9a6808884feb.nii.gz/MD5E-s52524738--b14fee80e28be98cfdaa9a6808884feb.nii.gz

SWU_4/sub-0025716/ses-1/mri/julichbrain_sub-0025716_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025716/ses-1/mri/julichbrain_sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/98/5W/MD5E-s218590--e9cdd7e5a8d528bea33f3dc88f3e483a.nii.gz/MD5E-s218590--e9cdd7e5a8d528bea33f3dc88f3e483a.nii.gz

SWU_4/sub-0025716/ses-1/mri/lpba40_sub-0025716_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025716/ses-1/mri/lpba40_sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/Vz/MD5E-s156805--07e32cd2685fecb831819d28662d9c10.nii.gz/MD5E-s156805--07e32cd2685fecb831819d28662d9c10.nii.gz

SWU_4/sub-0025716/ses-1/mri/m0wp1sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9M/FV/MD5E-s2566696--1b3abd95ccd25f5f2fca4651607552cc.nii.gz/MD5E-s2566696--1b3abd95ccd25f5f2fca4651607552cc.nii.gz

SWU_4/sub-0025716/ses-1/mri/m0wp2sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fz/xG/MD5E-s2325518--7e01c9f8f35e988f9717755e9571b389.nii.gz/MD5E-s2325518--7e01c9f8f35e988f9717755e9571b389.nii.gz

SWU_4/sub-0025716/ses-1/mri/m0wp3sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0v/6f/MD5E-s2501339--57bc42e987d75673cb6f9eee2d2584bf.nii.gz/MD5E-s2501339--57bc42e987d75673cb6f9eee2d2584bf.nii.gz

SWU_4/sub-0025716/ses-1/mri/mori_sub-0025716_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025716/ses-1/mri/mori_sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zv/3x/MD5E-s187186--391f5d5c00c2fa93bc4edeb9e6ab04df.nii.gz/MD5E-s187186--391f5d5c00c2fa93bc4edeb9e6ab04df.nii.gz

SWU_4/sub-0025716/ses-1/mri/mwp1sub-0025716_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Mg/pq/MD5E-s2566412--f4d762b75141286a03d64ed936a7c51a.nii.gz/MD5E-s2566412--f4d762b75141286a03d64ed936a7c51a.nii.gz

SWU_4/sub-0025716/ses-1/mri/mwp2sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zP/Kv/MD5E-s2321539--df1d267116676f7f2cab8b2dfde69c1f.nii.gz/MD5E-s2321539--df1d267116676f7f2cab8b2dfde69c1f.nii.gz

SWU_4/sub-0025716/ses-1/mri/mwp3sub-0025716_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/MF/2J/MD5E-s2497740--d50a36b783e4b4e52b3fe3fb07f783df.nii.gz/MD5E-s2497740--d50a36b783e4b4e52b3fe3fb07f783df.nii.gz

SWU_4/sub-0025716/ses-1/mri/neuromorphometrics_sub-0025716_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025716/ses-1/mri/neuromorphometrics_sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VG/4M/MD5E-s217646--12d036e18f8284da91b6c89043ae5a98.nii.gz/MD5E-s217646--12d036e18f8284da91b6c89043ae5a98.nii.gz

SWU_4/sub-0025716/ses-1/mri/p0sub-0025716_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p4/M3/MD5E-s715787--32c26fbc6e86d9a118c64dd129622efd.nii.gz/MD5E-s715787--32c26fbc6e86d9a118c64dd129622efd.nii.gz

SWU_4/sub-0025716/ses-1/mri/p1sub-0025716_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025716/ses-1/mri/p2sub-0025716_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025716/ses-1/mri/p3sub-0025716_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025716/ses-1/mri/rp1sub-0025716_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025716/ses-1/mri/rp2sub-0025716_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025716/ses-1/mri/rp3sub-0025716_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025716/ses-1/mri/t_sub-0025716_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/KM/MD5E-s283--1946ba495e1c977db2e48889c5d1736b.mat/MD5E-s283--1946ba495e1c977db2e48889c5d1736b.mat

SWU_4/sub-0025716/ses-1/mri/t_sub-0025716_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025716/ses-1/mri/thalamus_sub-0025716_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025716/ses-1/mri/thalamus_sub-0025716_ses-1_run-1_T1w.nii.gz

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