[DATALAD RUNCMD] Compute SWU_4/sub-0025719/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025719/ses-2/anat/sub-0025719_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025719/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025719/ses-2/label/catROI_sub-0025719_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wj/6f/MD5E-s61322--ee91bf409de8b4231ea2bc2ca6ced810.mat/MD5E-s61322--ee91bf409de8b4231ea2bc2ca6ced810.mat

SWU_4/sub-0025719/ses-2/label/catROI_sub-0025719_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jz/7W/MD5E-s188704--04f133665fa7033b24351ff643ef9cbe.xml/MD5E-s188704--04f133665fa7033b24351ff643ef9cbe.xml

SWU_4/sub-0025719/ses-2/label/catROIs_sub-0025719_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/57/3z/MD5E-s120102--948fe5a5813276f61373704023093ca1.mat/MD5E-s120102--948fe5a5813276f61373704023093ca1.mat

SWU_4/sub-0025719/ses-2/label/catROIs_sub-0025719_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p2/2w/MD5E-s332026--7e4342865b37226fea6322200c56b826.xml/MD5E-s332026--7e4342865b37226fea6322200c56b826.xml

SWU_4/sub-0025719/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025719_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025719/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VK/f3/MD5E-s177278--ab7ae619c492024eb6dcb20118c12aa0.nii.gz/MD5E-s177278--ab7ae619c492024eb6dcb20118c12aa0.nii.gz

SWU_4/sub-0025719/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025719_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025719/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/74/48/MD5E-s197537--f193d43e4151db9ecd1a9cdec2e73bfe.nii.gz/MD5E-s197537--f193d43e4151db9ecd1a9cdec2e73bfe.nii.gz

SWU_4/sub-0025719/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025719_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025719/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9F/wM/MD5E-s267483--e987f2c9632e063432f73b89d927aba9.nii.gz/MD5E-s267483--e987f2c9632e063432f73b89d927aba9.nii.gz

SWU_4/sub-0025719/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025719_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025719/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/71/8J/MD5E-s296501--88a54bf13fb3d1253f3ed11a8539c2d8.nii.gz/MD5E-s296501--88a54bf13fb3d1253f3ed11a8539c2d8.nii.gz

SWU_4/sub-0025719/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025719_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025719/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QX/wj/MD5E-s25750--8cc9bd672873f8f37b8af9fe3e9a0019.nii.gz/MD5E-s25750--8cc9bd672873f8f37b8af9fe3e9a0019.nii.gz

SWU_4/sub-0025719/ses-2/mri/aal3_sub-0025719_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025719/ses-2/mri/aal3_sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9K/v9/MD5E-s199811--15b5ddfe999b79dea4dd0e3943200b58.nii.gz/MD5E-s199811--15b5ddfe999b79dea4dd0e3943200b58.nii.gz

SWU_4/sub-0025719/ses-2/mri/anatomy3_sub-0025719_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025719/ses-2/mri/anatomy3_sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kw/PF/MD5E-s145037--24f2be80f0faff95ee9400fac864ffc6.nii.gz/MD5E-s145037--24f2be80f0faff95ee9400fac864ffc6.nii.gz

SWU_4/sub-0025719/ses-2/mri/anon_misub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wg/9X/MD5E-s10034911--3fa96a2a3ca2ab8ecbab3c073dd0eaa2.nii.gz/MD5E-s10034911--3fa96a2a3ca2ab8ecbab3c073dd0eaa2.nii.gz

SWU_4/sub-0025719/ses-2/mri/anon_msub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/xZ/MD5E-s11279260--4173350830991a37a63b0fe832e29f01.nii.gz/MD5E-s11279260--4173350830991a37a63b0fe832e29f01.nii.gz

SWU_4/sub-0025719/ses-2/mri/cat_sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XM/2K/MD5E-s108250--850f45ec71c56d6b50ddfe887d119e54.nii.gz/MD5E-s108250--850f45ec71c56d6b50ddfe887d119e54.nii.gz

SWU_4/sub-0025719/ses-2/mri/cobra_sub-0025719_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025719/ses-2/mri/cobra_sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wG/X7/MD5E-s50400--0c42992582282e7b0b73a461082c8709.nii.gz/MD5E-s50400--0c42992582282e7b0b73a461082c8709.nii.gz

SWU_4/sub-0025719/ses-2/mri/hammers_sub-0025719_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025719/ses-2/mri/hammers_sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qq/z3/MD5E-s156156--7368a35dea4e69536551e02457542d6d.nii.gz/MD5E-s156156--7368a35dea4e69536551e02457542d6d.nii.gz

SWU_4/sub-0025719/ses-2/mri/ibsr_sub-0025719_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025719/ses-2/mri/ibsr_sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9z/f4/MD5E-s165558--ea05ac32c78778b355c62efc606ef997.nii.gz/MD5E-s165558--ea05ac32c78778b355c62efc606ef997.nii.gz

SWU_4/sub-0025719/ses-2/mri/it_sub-0025719_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MZ/kg/MD5E-s284--504d3017e2fc25e7dccefd0c2dcb5710.mat/MD5E-s284--504d3017e2fc25e7dccefd0c2dcb5710.mat

SWU_4/sub-0025719/ses-2/mri/it_sub-0025719_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mG/zX/MD5E-s282--8cce68b532b6d830fc238d6048f144f0.mat/MD5E-s282--8cce68b532b6d830fc238d6048f144f0.mat

SWU_4/sub-0025719/ses-2/mri/iy_sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JM/qP/MD5E-s51664330--ab2a5829a377262464cd0dab92f4d278.nii.gz/MD5E-s51664330--ab2a5829a377262464cd0dab92f4d278.nii.gz

SWU_4/sub-0025719/ses-2/mri/julichbrain_sub-0025719_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025719/ses-2/mri/julichbrain_sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8W/j2/MD5E-s213502--1cc08bf89b83f5ea35fa2131e8e939e4.nii.gz/MD5E-s213502--1cc08bf89b83f5ea35fa2131e8e939e4.nii.gz

SWU_4/sub-0025719/ses-2/mri/lpba40_sub-0025719_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025719/ses-2/mri/lpba40_sub-0025719_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/k2/7W/MD5E-s152994--b4c56c94348470c13fe40dd5c7210f23.nii.gz/MD5E-s152994--b4c56c94348470c13fe40dd5c7210f23.nii.gz

SWU_4/sub-0025719/ses-2/mri/m0wp1sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/07/V3/MD5E-s2574806--6b151abdbd14b46daaadc4f52f521808.nii.gz/MD5E-s2574806--6b151abdbd14b46daaadc4f52f521808.nii.gz

SWU_4/sub-0025719/ses-2/mri/m0wp2sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jM/wP/MD5E-s2320227--828fe40e034c25f3bd2e639c1af5e2f8.nii.gz/MD5E-s2320227--828fe40e034c25f3bd2e639c1af5e2f8.nii.gz

SWU_4/sub-0025719/ses-2/mri/m0wp3sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2P/j8/MD5E-s2517876--de6f2fb400d5f772a0e8fd86d8d761d1.nii.gz/MD5E-s2517876--de6f2fb400d5f772a0e8fd86d8d761d1.nii.gz

SWU_4/sub-0025719/ses-2/mri/mori_sub-0025719_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025719/ses-2/mri/mori_sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4g/wF/MD5E-s184914--4445470fca2cb8ab1e3998cddda1c31e.nii.gz/MD5E-s184914--4445470fca2cb8ab1e3998cddda1c31e.nii.gz

SWU_4/sub-0025719/ses-2/mri/mwp1sub-0025719_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025719/ses-2/mri/mwp2sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kG/z6/MD5E-s2316521--c6fa5e18adc4c4713045b4c78ad9a484.nii.gz/MD5E-s2316521--c6fa5e18adc4c4713045b4c78ad9a484.nii.gz

SWU_4/sub-0025719/ses-2/mri/mwp3sub-0025719_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025719/ses-2/mri/neuromorphometrics_sub-0025719_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025719/ses-2/mri/neuromorphometrics_sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025719/ses-2/mri/p0sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/32/mg/MD5E-s710406--d14e739c57e084cceff42ede172f5272.nii.gz/MD5E-s710406--d14e739c57e084cceff42ede172f5272.nii.gz

SWU_4/sub-0025719/ses-2/mri/p1sub-0025719_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025719/ses-2/mri/p2sub-0025719_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Gv/Ww/MD5E-s500303--03dda411b43342ca28ec003939123aa0.nii.gz/MD5E-s500303--03dda411b43342ca28ec003939123aa0.nii.gz

SWU_4/sub-0025719/ses-2/mri/p3sub-0025719_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025719/ses-2/mri/rp1sub-0025719_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025719/ses-2/mri/rp2sub-0025719_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025719/ses-2/mri/rp3sub-0025719_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025719/ses-2/mri/t_sub-0025719_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025719/ses-2/mri/t_sub-0025719_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025719/ses-2/mri/thalamus_sub-0025719_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025719/ses-2/mri/thalamus_sub-0025719_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025719/ses-2/mri/wj_sub-0025719_ses-2_run-1_T1w.nii.gz

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