[DATALAD RUNCMD] Compute BNU_1/sub-0025888/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025888/ses-1/anat/sub-0025888_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025888/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025888/ses-1/label/catROI_sub-0025888_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vw/ZQ/MD5E-s61392--aab9a8f90b17df2ce9327d8ce84154d6.mat/MD5E-s61392--aab9a8f90b17df2ce9327d8ce84154d6.mat

BNU_1/sub-0025888/ses-1/label/catROI_sub-0025888_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1k/84/MD5E-s188944--fea2a79490b0e7744369b597de0caefc.xml/MD5E-s188944--fea2a79490b0e7744369b597de0caefc.xml

BNU_1/sub-0025888/ses-1/label/catROIs_sub-0025888_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G7/g7/MD5E-s120038--7a4b2cbe87f17024db0989c53d88df73.mat/MD5E-s120038--7a4b2cbe87f17024db0989c53d88df73.mat

BNU_1/sub-0025888/ses-1/label/catROIs_sub-0025888_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4Z/8f/MD5E-s332071--dc24950af212ca2a178be72ca343a60a.xml/MD5E-s332071--dc24950af212ca2a178be72ca343a60a.xml

BNU_1/sub-0025888/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025888_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025888/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zZ/7Z/MD5E-s152196--43431432c4e736945c93d18d429e6eae.nii.gz/MD5E-s152196--43431432c4e736945c93d18d429e6eae.nii.gz

BNU_1/sub-0025888/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025888_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025888/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P7/Gp/MD5E-s172723--abf6c0770df75a0bf3f0744650d2510e.nii.gz/MD5E-s172723--abf6c0770df75a0bf3f0744650d2510e.nii.gz

BNU_1/sub-0025888/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025888_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025888/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pj/Z1/MD5E-s230341--8091303bcfad270bd6da1c6b30526df9.nii.gz/MD5E-s230341--8091303bcfad270bd6da1c6b30526df9.nii.gz

BNU_1/sub-0025888/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025888_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025888/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X1/xp/MD5E-s257940--63ff8abd5d29635c29f3e46c29d6b2a2.nii.gz/MD5E-s257940--63ff8abd5d29635c29f3e46c29d6b2a2.nii.gz

BNU_1/sub-0025888/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025888_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025888/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q2/QQ/MD5E-s21021--6ac28e765d64ae04f5f33c0324b8cdaa.nii.gz/MD5E-s21021--6ac28e765d64ae04f5f33c0324b8cdaa.nii.gz

BNU_1/sub-0025888/ses-1/mri/aal3_sub-0025888_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025888/ses-1/mri/aal3_sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/71/qQ/MD5E-s175489--59f2f674963a4e2dc3e978c294774f47.nii.gz/MD5E-s175489--59f2f674963a4e2dc3e978c294774f47.nii.gz

BNU_1/sub-0025888/ses-1/mri/anatomy3_sub-0025888_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025888/ses-1/mri/anatomy3_sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4f/0p/MD5E-s123345--97986475de0e9fe2b2bc587960c2f37a.nii.gz/MD5E-s123345--97986475de0e9fe2b2bc587960c2f37a.nii.gz

BNU_1/sub-0025888/ses-1/mri/anon_misub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jq/qw/MD5E-s4126854--5ae75e84f10ff5a9eab85f19e6701c69.nii.gz/MD5E-s4126854--5ae75e84f10ff5a9eab85f19e6701c69.nii.gz

BNU_1/sub-0025888/ses-1/mri/anon_msub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1F/WK/MD5E-s7750286--730f821a7e5bb075e47e52292813e6a5.nii.gz/MD5E-s7750286--730f821a7e5bb075e47e52292813e6a5.nii.gz

BNU_1/sub-0025888/ses-1/mri/cat_sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2f/zV/MD5E-s95239--39392fa031cfc6e0a42d7ea11594a73e.nii.gz/MD5E-s95239--39392fa031cfc6e0a42d7ea11594a73e.nii.gz

BNU_1/sub-0025888/ses-1/mri/cobra_sub-0025888_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025888/ses-1/mri/cobra_sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/25/kf/MD5E-s43993--fa50c8c6627f8b85bb2e118bee38fb22.nii.gz/MD5E-s43993--fa50c8c6627f8b85bb2e118bee38fb22.nii.gz

BNU_1/sub-0025888/ses-1/mri/hammers_sub-0025888_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025888/ses-1/mri/hammers_sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9x/Px/MD5E-s137651--02681f43f73d8388a02f8c8953a85656.nii.gz/MD5E-s137651--02681f43f73d8388a02f8c8953a85656.nii.gz

BNU_1/sub-0025888/ses-1/mri/ibsr_sub-0025888_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025888/ses-1/mri/ibsr_sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7M/Vj/MD5E-s145244--72857e02dc14dcbf07da94d232af0bb0.nii.gz/MD5E-s145244--72857e02dc14dcbf07da94d232af0bb0.nii.gz

BNU_1/sub-0025888/ses-1/mri/it_sub-0025888_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wk/j8/MD5E-s283--5afbff5aad65480ddd4b5eca477afda4.mat/MD5E-s283--5afbff5aad65480ddd4b5eca477afda4.mat

BNU_1/sub-0025888/ses-1/mri/it_sub-0025888_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7V/6Q/MD5E-s282--bb97d079a78123d7d9a23cc3c44442b5.mat/MD5E-s282--bb97d079a78123d7d9a23cc3c44442b5.mat

BNU_1/sub-0025888/ses-1/mri/iy_sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vX/KW/MD5E-s38229005--fccb59799139bd95e60e6641cb04f03d.nii.gz/MD5E-s38229005--fccb59799139bd95e60e6641cb04f03d.nii.gz

BNU_1/sub-0025888/ses-1/mri/julichbrain_sub-0025888_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025888/ses-1/mri/julichbrain_sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W8/j6/MD5E-s183059--0e2cecfef56e39fe61bdd92771442350.nii.gz/MD5E-s183059--0e2cecfef56e39fe61bdd92771442350.nii.gz

BNU_1/sub-0025888/ses-1/mri/lpba40_sub-0025888_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025888/ses-1/mri/lpba40_sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7F/Jx/MD5E-s135731--516c9968bd5e71675b208d46f784bd36.nii.gz/MD5E-s135731--516c9968bd5e71675b208d46f784bd36.nii.gz

BNU_1/sub-0025888/ses-1/mri/m0wp1sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mv/g1/MD5E-s2583096--7e8e7fd5b1cb345bf738279b79041efd.nii.gz/MD5E-s2583096--7e8e7fd5b1cb345bf738279b79041efd.nii.gz

BNU_1/sub-0025888/ses-1/mri/m0wp2sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G3/g5/MD5E-s2291672--e50c57f235d68b58e11679b45616964b.nii.gz/MD5E-s2291672--e50c57f235d68b58e11679b45616964b.nii.gz

BNU_1/sub-0025888/ses-1/mri/m0wp3sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/68/M0/MD5E-s2443815--58e159f9b83b59949bfa750fb8020845.nii.gz/MD5E-s2443815--58e159f9b83b59949bfa750fb8020845.nii.gz

BNU_1/sub-0025888/ses-1/mri/mori_sub-0025888_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025888/ses-1/mri/mori_sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GK/Xv/MD5E-s161259--1af16be26a128c20cfb346279dd0e9d4.nii.gz/MD5E-s161259--1af16be26a128c20cfb346279dd0e9d4.nii.gz

BNU_1/sub-0025888/ses-1/mri/mwp1sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p8/Qk/MD5E-s2583948--ad066c18be4b7e0252499fe2e6073cea.nii.gz/MD5E-s2583948--ad066c18be4b7e0252499fe2e6073cea.nii.gz

BNU_1/sub-0025888/ses-1/mri/mwp2sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M9/gp/MD5E-s2288913--acbdc4c3f719fc226435208f9bac8303.nii.gz/MD5E-s2288913--acbdc4c3f719fc226435208f9bac8303.nii.gz

BNU_1/sub-0025888/ses-1/mri/mwp3sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M8/kQ/MD5E-s2442258--fd631e3f68329e22b320891c04c13d16.nii.gz/MD5E-s2442258--fd631e3f68329e22b320891c04c13d16.nii.gz

BNU_1/sub-0025888/ses-1/mri/neuromorphometrics_sub-0025888_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025888/ses-1/mri/neuromorphometrics_sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xp/25/MD5E-s186790--e0df99f83d86416e976c24b459dbd3db.nii.gz/MD5E-s186790--e0df99f83d86416e976c24b459dbd3db.nii.gz

BNU_1/sub-0025888/ses-1/mri/p0sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MZ/wM/MD5E-s800852--e7048007f84c75f4ed3723b0217c66cf.nii.gz/MD5E-s800852--e7048007f84c75f4ed3723b0217c66cf.nii.gz

BNU_1/sub-0025888/ses-1/mri/p1sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4v/2k/MD5E-s824528--d9d95e2d1eebc3b70572f6f9fac12dc1.nii.gz/MD5E-s824528--d9d95e2d1eebc3b70572f6f9fac12dc1.nii.gz

BNU_1/sub-0025888/ses-1/mri/p2sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pJ/P3/MD5E-s554468--ff282919d7d2ceb0be0caa00a994e98f.nii.gz/MD5E-s554468--ff282919d7d2ceb0be0caa00a994e98f.nii.gz

BNU_1/sub-0025888/ses-1/mri/p3sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fJ/X4/MD5E-s490639--8cb307d9b5b1a3ec44fedc05bc9fbfd5.nii.gz/MD5E-s490639--8cb307d9b5b1a3ec44fedc05bc9fbfd5.nii.gz

BNU_1/sub-0025888/ses-1/mri/rp1sub-0025888_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3P/M3/MD5E-s443611--fbe712f737ad5980c65243ed4c794eb1.nii.gz/MD5E-s443611--fbe712f737ad5980c65243ed4c794eb1.nii.gz

BNU_1/sub-0025888/ses-1/mri/rp2sub-0025888_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025888/ses-1/mri/rp3sub-0025888_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025888/ses-1/mri/t_sub-0025888_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025888/ses-1/mri/t_sub-0025888_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/46/z9/MD5E-s284--8d229a43085c62ba9e6f1b09d6dd7907.mat/MD5E-s284--8d229a43085c62ba9e6f1b09d6dd7907.mat

BNU_1/sub-0025888/ses-1/mri/thalamus_sub-0025888_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025888/ses-1/mri/thalamus_sub-0025888_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zw/kZ/MD5E-s13709--614d553855f61a18329f3f2a7793ccde.nii.gz/MD5E-s13709--614d553855f61a18329f3f2a7793ccde.nii.gz

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