[DATALAD RUNCMD] Compute MRN/sub-0027029/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027029/ses-2/anat/sub-0027029_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027029/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027029/ses-2/label/catROI_sub-0027029_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G5/gp/MD5E-s61264--b540617759ddaa3c4c1183c5b0de07b8.mat/MD5E-s61264--b540617759ddaa3c4c1183c5b0de07b8.mat

MRN/sub-0027029/ses-2/label/catROI_sub-0027029_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1J/9w/MD5E-s189047--1fa89ca10f8b3b4897c16a8162a42c5e.xml/MD5E-s189047--1fa89ca10f8b3b4897c16a8162a42c5e.xml

MRN/sub-0027029/ses-2/label/catROIs_sub-0027029_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4k/3m/MD5E-s120056--c161e904977fb927162d17ecf92ee4f2.mat/MD5E-s120056--c161e904977fb927162d17ecf92ee4f2.mat

MRN/sub-0027029/ses-2/label/catROIs_sub-0027029_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FG/w9/MD5E-s332122--73491d02abbc44c9b956f8626b2a4df2.xml/MD5E-s332122--73491d02abbc44c9b956f8626b2a4df2.xml

MRN/sub-0027029/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027029_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027029/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027029_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/60/WV/MD5E-s166642--f19f8b313337cb82603456a23eef86cb.nii.gz/MD5E-s166642--f19f8b313337cb82603456a23eef86cb.nii.gz

MRN/sub-0027029/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027029_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027029/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027029_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v5/k1/MD5E-s186149--aab8028f7f30d006c69f9e9ca8a465ff.nii.gz/MD5E-s186149--aab8028f7f30d006c69f9e9ca8a465ff.nii.gz

MRN/sub-0027029/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027029_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027029/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027029_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zx/Fz/MD5E-s248854--3de58e9a5dab57bd44af99b9b534f31d.nii.gz/MD5E-s248854--3de58e9a5dab57bd44af99b9b534f31d.nii.gz

MRN/sub-0027029/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027029_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027029/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027029_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p5/zF/MD5E-s275699--2c5a956fd326d9617e9fd1bc53ada526.nii.gz/MD5E-s275699--2c5a956fd326d9617e9fd1bc53ada526.nii.gz

MRN/sub-0027029/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027029_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MRN/sub-0027029/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027029_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/97/5P/MD5E-s25843--d59fd0e07743fedadc3a06d921048df7.nii.gz/MD5E-s25843--d59fd0e07743fedadc3a06d921048df7.nii.gz

MRN/sub-0027029/ses-2/mri/aal3_sub-0027029_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027029/ses-2/mri/aal3_sub-0027029_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VK/J1/MD5E-s187271--651e283286969237dffbca71cd662b22.nii.gz/MD5E-s187271--651e283286969237dffbca71cd662b22.nii.gz

MRN/sub-0027029/ses-2/mri/anatomy3_sub-0027029_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027029/ses-2/mri/anatomy3_sub-0027029_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PQ/MK/MD5E-s137577--ca8c24921c0d111ddb5cb03042b2246a.nii.gz/MD5E-s137577--ca8c24921c0d111ddb5cb03042b2246a.nii.gz

MRN/sub-0027029/ses-2/mri/anon_misub-0027029_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/03/2q/MD5E-s8146921--2f24935cf0ef12de443b0025c927cb82.nii.gz/MD5E-s8146921--2f24935cf0ef12de443b0025c927cb82.nii.gz

MRN/sub-0027029/ses-2/mri/anon_msub-0027029_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FK/VF/MD5E-s7457026--9e8dbe12d32af4f34afb9eb9af0cb148.nii.gz/MD5E-s7457026--9e8dbe12d32af4f34afb9eb9af0cb148.nii.gz

MRN/sub-0027029/ses-2/mri/cat_sub-0027029_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/28/QX/MD5E-s97756--9036ef9073d8ef21678bde80a3c6fcc4.nii.gz/MD5E-s97756--9036ef9073d8ef21678bde80a3c6fcc4.nii.gz

MRN/sub-0027029/ses-2/mri/cobra_sub-0027029_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027029/ses-2/mri/cobra_sub-0027029_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w4/ZG/MD5E-s48866--6b585510590343b1b4ef3c53c594089f.nii.gz/MD5E-s48866--6b585510590343b1b4ef3c53c594089f.nii.gz

MRN/sub-0027029/ses-2/mri/hammers_sub-0027029_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MRN/sub-0027029/ses-2/mri/hammers_sub-0027029_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027029/ses-2/mri/ibsr_sub-0027029_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MRN/sub-0027029/ses-2/mri/ibsr_sub-0027029_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027029/ses-2/mri/it_sub-0027029_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1G/kx/MD5E-s282--414f401db8a7032d8bcc2b46f1a3437f.mat/MD5E-s282--414f401db8a7032d8bcc2b46f1a3437f.mat

MRN/sub-0027029/ses-2/mri/it_sub-0027029_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/93/kk/MD5E-s282--1b1f7e25234b9a2e60c6c5afbb62f729.mat/MD5E-s282--1b1f7e25234b9a2e60c6c5afbb62f729.mat

MRN/sub-0027029/ses-2/mri/iy_sub-0027029_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027029/ses-2/mri/julichbrain_sub-0027029_ses-2_run-1_T1w.csv

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MRN/sub-0027029/ses-2/mri/julichbrain_sub-0027029_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027029/ses-2/mri/lpba40_sub-0027029_ses-2_run-1_T1w.csv

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MRN/sub-0027029/ses-2/mri/lpba40_sub-0027029_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027029/ses-2/mri/m0wp1sub-0027029_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027029/ses-2/mri/m0wp2sub-0027029_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027029/ses-2/mri/m0wp3sub-0027029_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027029/ses-2/mri/mori_sub-0027029_ses-2_run-1_T1w.csv

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MRN/sub-0027029/ses-2/mri/mori_sub-0027029_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027029/ses-2/mri/mwp1sub-0027029_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027029/ses-2/mri/mwp2sub-0027029_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027029/ses-2/mri/mwp3sub-0027029_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027029/ses-2/mri/neuromorphometrics_sub-0027029_ses-2_run-1_T1w.csv

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MRN/sub-0027029/ses-2/mri/neuromorphometrics_sub-0027029_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027029/ses-2/mri/p0sub-0027029_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027029/ses-2/mri/p1sub-0027029_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027029/ses-2/mri/p2sub-0027029_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027029/ses-2/mri/p3sub-0027029_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027029/ses-2/mri/rp1sub-0027029_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027029/ses-2/mri/rp2sub-0027029_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027029/ses-2/mri/rp3sub-0027029_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027029/ses-2/mri/t_sub-0027029_ses-2_run-1_T1w_affine_reorient.mat

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MRN/sub-0027029/ses-2/mri/t_sub-0027029_ses-2_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027029/ses-2/mri/thalamus_sub-0027029_ses-2_run-1_T1w.csv

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MRN/sub-0027029/ses-2/mri/thalamus_sub-0027029_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027029/ses-2/mri/wj_sub-0027029_ses-2_run-1_T1w.nii.gz

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