[DATALAD RUNCMD] Compute HNU_1/sub-0025437/ses-5

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/HNU_1/sub-0025437/ses-5/anat/sub-0025437_ses-5_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "HNU_1/sub-0025437/ses-5"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

HNU_1/sub-0025437/ses-5/label/catROI_sub-0025437_ses-5_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k9/JJ/MD5E-s61401--e581ff46767a89c4e10636f0da2f4546.mat/MD5E-s61401--e581ff46767a89c4e10636f0da2f4546.mat

HNU_1/sub-0025437/ses-5/label/catROI_sub-0025437_ses-5_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Px/FG/MD5E-s188818--2fd56c649790042bc450ac1ca6ee242d.xml/MD5E-s188818--2fd56c649790042bc450ac1ca6ee242d.xml

HNU_1/sub-0025437/ses-5/label/catROIs_sub-0025437_ses-5_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z5/M0/MD5E-s120056--22e044c23937d12345d84c8af436d8c3.mat/MD5E-s120056--22e044c23937d12345d84c8af436d8c3.mat

HNU_1/sub-0025437/ses-5/label/catROIs_sub-0025437_ses-5_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M2/kV/MD5E-s332163--808d46b69a09321a5cae6a10a3acda6f.xml/MD5E-s332163--808d46b69a09321a5cae6a10a3acda6f.xml

HNU_1/sub-0025437/ses-5/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025437_ses-5_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

HNU_1/sub-0025437/ses-5/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qz/fv/MD5E-s188123--a51e9bbad029b5f4d7e2d5c231042e73.nii.gz/MD5E-s188123--a51e9bbad029b5f4d7e2d5c231042e73.nii.gz

HNU_1/sub-0025437/ses-5/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025437_ses-5_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

HNU_1/sub-0025437/ses-5/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0j/86/MD5E-s213720--985250c592f7f70738c9d191b6add270.nii.gz/MD5E-s213720--985250c592f7f70738c9d191b6add270.nii.gz

HNU_1/sub-0025437/ses-5/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025437_ses-5_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

HNU_1/sub-0025437/ses-5/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x4/4k/MD5E-s287030--0e0ddd2d6e74e2423e10e08ad4626f26.nii.gz/MD5E-s287030--0e0ddd2d6e74e2423e10e08ad4626f26.nii.gz

HNU_1/sub-0025437/ses-5/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025437_ses-5_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

HNU_1/sub-0025437/ses-5/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WX/vv/MD5E-s319718--3d4d2fa65fb89ca4081ea151ddfe71a1.nii.gz/MD5E-s319718--3d4d2fa65fb89ca4081ea151ddfe71a1.nii.gz

HNU_1/sub-0025437/ses-5/mri/Tian_Subcortex_S2_7T_sub-0025437_ses-5_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

HNU_1/sub-0025437/ses-5/mri/Tian_Subcortex_S2_7T_sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VQ/xw/MD5E-s26737--186ca105266deb48445801350d9699c7.nii.gz/MD5E-s26737--186ca105266deb48445801350d9699c7.nii.gz

HNU_1/sub-0025437/ses-5/mri/aal3_sub-0025437_ses-5_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

HNU_1/sub-0025437/ses-5/mri/aal3_sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3v/fX/MD5E-s214585--431c30a15f063cf84887df6bd4e5302d.nii.gz/MD5E-s214585--431c30a15f063cf84887df6bd4e5302d.nii.gz

HNU_1/sub-0025437/ses-5/mri/anatomy3_sub-0025437_ses-5_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

HNU_1/sub-0025437/ses-5/mri/anatomy3_sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G0/jw/MD5E-s154901--50107406bb90e550ceeaa512d962e041.nii.gz/MD5E-s154901--50107406bb90e550ceeaa512d962e041.nii.gz

HNU_1/sub-0025437/ses-5/mri/anon_misub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qq/KX/MD5E-s5668790--c20c204938fc498b69cfae371678094b.nii.gz/MD5E-s5668790--c20c204938fc498b69cfae371678094b.nii.gz

HNU_1/sub-0025437/ses-5/mri/anon_msub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/78/z9/MD5E-s11309120--2c48ec89bcc97761ecbadc6a2968cb70.nii.gz/MD5E-s11309120--2c48ec89bcc97761ecbadc6a2968cb70.nii.gz

HNU_1/sub-0025437/ses-5/mri/cat_sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p3/7M/MD5E-s121983--b46a6fa5e24b6694136331af76bfebd8.nii.gz/MD5E-s121983--b46a6fa5e24b6694136331af76bfebd8.nii.gz

HNU_1/sub-0025437/ses-5/mri/cobra_sub-0025437_ses-5_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

HNU_1/sub-0025437/ses-5/mri/cobra_sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f7/FX/MD5E-s53810--e0396b1f40e38a7daa9fbf1e3a1bf56b.nii.gz/MD5E-s53810--e0396b1f40e38a7daa9fbf1e3a1bf56b.nii.gz

HNU_1/sub-0025437/ses-5/mri/hammers_sub-0025437_ses-5_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

HNU_1/sub-0025437/ses-5/mri/hammers_sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9q/8X/MD5E-s169684--7d8ed0d71798df5919e612ad2074ebe7.nii.gz/MD5E-s169684--7d8ed0d71798df5919e612ad2074ebe7.nii.gz

HNU_1/sub-0025437/ses-5/mri/ibsr_sub-0025437_ses-5_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

HNU_1/sub-0025437/ses-5/mri/ibsr_sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wW/k6/MD5E-s176875--54dca975abea3cb75b6e2f9c5dd20ddd.nii.gz/MD5E-s176875--54dca975abea3cb75b6e2f9c5dd20ddd.nii.gz

HNU_1/sub-0025437/ses-5/mri/it_sub-0025437_ses-5_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qw/44/MD5E-s282--43ae5f45dd5268b0e1985439ef5a4e4a.mat/MD5E-s282--43ae5f45dd5268b0e1985439ef5a4e4a.mat

HNU_1/sub-0025437/ses-5/mri/it_sub-0025437_ses-5_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gz/71/MD5E-s282--897ad368e92e1a77af76769a90f41c46.mat/MD5E-s282--897ad368e92e1a77af76769a90f41c46.mat

HNU_1/sub-0025437/ses-5/mri/iy_sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pq/pm/MD5E-s54106834--80cb419987e53126799697ac9e7c4b06.nii.gz/MD5E-s54106834--80cb419987e53126799697ac9e7c4b06.nii.gz

HNU_1/sub-0025437/ses-5/mri/julichbrain_sub-0025437_ses-5_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

HNU_1/sub-0025437/ses-5/mri/julichbrain_sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7V/9k/MD5E-s228668--bde7d9eca3577f3d450bf503e77ed3fc.nii.gz/MD5E-s228668--bde7d9eca3577f3d450bf503e77ed3fc.nii.gz

HNU_1/sub-0025437/ses-5/mri/lpba40_sub-0025437_ses-5_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

HNU_1/sub-0025437/ses-5/mri/lpba40_sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wf/wj/MD5E-s165277--03b81b7a5c5dca40034c66a5994ca2b8.nii.gz/MD5E-s165277--03b81b7a5c5dca40034c66a5994ca2b8.nii.gz

HNU_1/sub-0025437/ses-5/mri/m0wp1sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qx/5V/MD5E-s2616508--a997e6b9b7a2329fa0ec59d60a3977ea.nii.gz/MD5E-s2616508--a997e6b9b7a2329fa0ec59d60a3977ea.nii.gz

HNU_1/sub-0025437/ses-5/mri/m0wp2sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z0/fj/MD5E-s2381554--6d4fddc5082ab83f33a18767c15cc8e3.nii.gz/MD5E-s2381554--6d4fddc5082ab83f33a18767c15cc8e3.nii.gz

HNU_1/sub-0025437/ses-5/mri/m0wp3sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5g/6K/MD5E-s2745286--6a2cf93817d8795f90eb41df4bdeb5bb.nii.gz/MD5E-s2745286--6a2cf93817d8795f90eb41df4bdeb5bb.nii.gz

HNU_1/sub-0025437/ses-5/mri/mori_sub-0025437_ses-5_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

HNU_1/sub-0025437/ses-5/mri/mori_sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6F/vz/MD5E-s195469--3e93e198e1c9582c8b9dae10af5003c1.nii.gz/MD5E-s195469--3e93e198e1c9582c8b9dae10af5003c1.nii.gz

HNU_1/sub-0025437/ses-5/mri/mwp1sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/4W/MD5E-s2619491--e71af4250ca53dddd5849ba64fbd6b7f.nii.gz/MD5E-s2619491--e71af4250ca53dddd5849ba64fbd6b7f.nii.gz

HNU_1/sub-0025437/ses-5/mri/mwp2sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g7/Jx/MD5E-s2378449--fa4125004181c2e34e7f3ba0b466dc94.nii.gz/MD5E-s2378449--fa4125004181c2e34e7f3ba0b466dc94.nii.gz

HNU_1/sub-0025437/ses-5/mri/mwp3sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/xK/MD5E-s2745408--bd457ec42af4f6fcfe2beb81f7d89d63.nii.gz/MD5E-s2745408--bd457ec42af4f6fcfe2beb81f7d89d63.nii.gz

HNU_1/sub-0025437/ses-5/mri/neuromorphometrics_sub-0025437_ses-5_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

HNU_1/sub-0025437/ses-5/mri/neuromorphometrics_sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jV/48/MD5E-s231335--7cb1e70161720bb87838d8ee2c1ebc1d.nii.gz/MD5E-s231335--7cb1e70161720bb87838d8ee2c1ebc1d.nii.gz

HNU_1/sub-0025437/ses-5/mri/p0sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J4/00/MD5E-s815003--fab9cfae17ba0b350b98f48b29c76b6b.nii.gz/MD5E-s815003--fab9cfae17ba0b350b98f48b29c76b6b.nii.gz

HNU_1/sub-0025437/ses-5/mri/p1sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xz/56/MD5E-s861223--edf47788a3d3767c3752884de5179623.nii.gz/MD5E-s861223--edf47788a3d3767c3752884de5179623.nii.gz

HNU_1/sub-0025437/ses-5/mri/p2sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JZ/Pj/MD5E-s517940--f82d7457cf17cbe1032be571721bea1a.nii.gz/MD5E-s517940--f82d7457cf17cbe1032be571721bea1a.nii.gz

HNU_1/sub-0025437/ses-5/mri/p3sub-0025437_ses-5_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W4/gP/MD5E-s542010--36e921145b33957ae525f37be79e4ed1.nii.gz/MD5E-s542010--36e921145b33957ae525f37be79e4ed1.nii.gz

HNU_1/sub-0025437/ses-5/mri/rp1sub-0025437_ses-5_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VF/X2/MD5E-s485285--d95c0d5d4919651ab39471e1a39e7699.nii.gz/MD5E-s485285--d95c0d5d4919651ab39471e1a39e7699.nii.gz

HNU_1/sub-0025437/ses-5/mri/rp2sub-0025437_ses-5_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MZ/pP/MD5E-s315949--28cf76a4429e9e31cb95723128f424ac.nii.gz/MD5E-s315949--28cf76a4429e9e31cb95723128f424ac.nii.gz

HNU_1/sub-0025437/ses-5/mri/rp3sub-0025437_ses-5_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X0/Xw/MD5E-s361140--810aa4a5c0814898963f26a476b1eee6.nii.gz/MD5E-s361140--810aa4a5c0814898963f26a476b1eee6.nii.gz

HNU_1/sub-0025437/ses-5/mri/t_sub-0025437_ses-5_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0M/Vv/MD5E-s284--1ac06c677f55bc6502dfef8499a10b40.mat/MD5E-s284--1ac06c677f55bc6502dfef8499a10b40.mat

HNU_1/sub-0025437/ses-5/mri/t_sub-0025437_ses-5_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pf/G2/MD5E-s284--4a832687dad850fa8d43582b3bbc1f5e.mat/MD5E-s284--4a832687dad850fa8d43582b3bbc1f5e.mat

HNU_1/sub-0025437/ses-5/mri/thalamus_sub-0025437_ses-5_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

HNU_1/sub-0025437/ses-5/mri/thalamus_sub-0025437_ses-5_run-1_T1w.nii.gz

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