[DATALAD RUNCMD] Compute NYU_2/sub-0025103/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025103/ses-1/anat/sub-0025103_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025103/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025103/ses-1/label/catROI_sub-0025103_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x0/kJ/MD5E-s57960--4b5d55add28ef80bbe122e147491088a.mat/MD5E-s57960--4b5d55add28ef80bbe122e147491088a.mat

NYU_2/sub-0025103/ses-1/label/catROI_sub-0025103_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fm/Wv/MD5E-s188889--2438cfcd0bbdb2176bc8c803571c99b6.xml/MD5E-s188889--2438cfcd0bbdb2176bc8c803571c99b6.xml

NYU_2/sub-0025103/ses-1/label/catROI_sub-0025103_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/px/4x/MD5E-s57790--9c427d56bfe9ef75568f6c7473c4d2e6.mat/MD5E-s57790--9c427d56bfe9ef75568f6c7473c4d2e6.mat

NYU_2/sub-0025103/ses-1/label/catROI_sub-0025103_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8x/v9/MD5E-s188822--1c26782e96f7052b43deb82f2993a5e1.xml/MD5E-s188822--1c26782e96f7052b43deb82f2993a5e1.xml

NYU_2/sub-0025103/ses-1/label/catROIs_sub-0025103_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mp/wP/MD5E-s120244--1d83a1224884797c16f71fa80656bcf6.mat/MD5E-s120244--1d83a1224884797c16f71fa80656bcf6.mat

NYU_2/sub-0025103/ses-1/label/catROIs_sub-0025103_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7j/7m/MD5E-s332159--aff9eced1c3bbe545be21c7025d79608.xml/MD5E-s332159--aff9eced1c3bbe545be21c7025d79608.xml

NYU_2/sub-0025103/ses-1/label/catROIs_sub-0025103_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/P6/pV/MD5E-s120252--2a4824fb6e0733e9302d6feeb8062e08.mat/MD5E-s120252--2a4824fb6e0733e9302d6feeb8062e08.mat

NYU_2/sub-0025103/ses-1/label/catROIs_sub-0025103_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/1P/f1/MD5E-s332106--0977df58c851c6c9757ef6156c68f2c6.xml/MD5E-s332106--0977df58c851c6c9757ef6156c68f2c6.xml

NYU_2/sub-0025103/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025103_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/91/wf/MD5E-s142164--f3d8ea85f3e55a74d4f4e48d3153b056.nii.gz/MD5E-s142164--f3d8ea85f3e55a74d4f4e48d3153b056.nii.gz

NYU_2/sub-0025103/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/30/35/MD5E-s141594--50789cb9290aff4075c4b3e2bbe1ad20.nii.gz/MD5E-s141594--50789cb9290aff4075c4b3e2bbe1ad20.nii.gz

NYU_2/sub-0025103/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025103_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kg/JF/MD5E-s159466--bcce89262baec1704615d3275c266523.nii.gz/MD5E-s159466--bcce89262baec1704615d3275c266523.nii.gz

NYU_2/sub-0025103/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/jK/J0/MD5E-s159084--a81f361e98d0fa11c65b0a007304de03.nii.gz/MD5E-s159084--a81f361e98d0fa11c65b0a007304de03.nii.gz

NYU_2/sub-0025103/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025103_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p8/v3/MD5E-s214510--d07e7ac50483f89a210f6764f9500ccb.nii.gz/MD5E-s214510--d07e7ac50483f89a210f6764f9500ccb.nii.gz

NYU_2/sub-0025103/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/JV/jW/MD5E-s214636--d0807962a3c6dc44d935532267a1ed0c.nii.gz/MD5E-s214636--d0807962a3c6dc44d935532267a1ed0c.nii.gz

NYU_2/sub-0025103/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025103_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GM/M0/MD5E-s237598--ee80fe696447d5795e9ab36d0140f2cd.nii.gz/MD5E-s237598--ee80fe696447d5795e9ab36d0140f2cd.nii.gz

NYU_2/sub-0025103/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/7J/xk/MD5E-s237689--d8e8b91b0a362643072785651f9c94da.nii.gz/MD5E-s237689--d8e8b91b0a362643072785651f9c94da.nii.gz

NYU_2/sub-0025103/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025103_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z9/M7/MD5E-s20020--9809aa91e65dd00b3fcf3e60cca3e427.nii.gz/MD5E-s20020--9809aa91e65dd00b3fcf3e60cca3e427.nii.gz

NYU_2/sub-0025103/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/P3/1P/MD5E-s19892--b24d72b08ec43a1363ca84113163a067.nii.gz/MD5E-s19892--b24d72b08ec43a1363ca84113163a067.nii.gz

NYU_2/sub-0025103/ses-1/mri/aal3_sub-0025103_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g1/6x/MD5E-s163612--26d993b8328b95510928d21f3d7ee1c2.nii.gz/MD5E-s163612--26d993b8328b95510928d21f3d7ee1c2.nii.gz

NYU_2/sub-0025103/ses-1/mri/aal3_sub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5v/V5/MD5E-s163625--0273b0050795f5e31bcde0af2a070339.nii.gz/MD5E-s163625--0273b0050795f5e31bcde0af2a070339.nii.gz

NYU_2/sub-0025103/ses-1/mri/anatomy3_sub-0025103_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4k/3v/MD5E-s113290--257edda0bd1876bef70dfe28459d2a03.nii.gz/MD5E-s113290--257edda0bd1876bef70dfe28459d2a03.nii.gz

NYU_2/sub-0025103/ses-1/mri/anatomy3_sub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/K8/5x/MD5E-s112973--17892ee3ae62304753e8f96d199f4a9e.nii.gz/MD5E-s112973--17892ee3ae62304753e8f96d199f4a9e.nii.gz

NYU_2/sub-0025103/ses-1/mri/anon_misub-0025103_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F0/Jj/MD5E-s4168932--587f80e9f887608233fce99da1ed5f77.nii.gz/MD5E-s4168932--587f80e9f887608233fce99da1ed5f77.nii.gz

NYU_2/sub-0025103/ses-1/mri/anon_misub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/20/mJ/MD5E-s4118292--6be4978c4904f764e886904aaf2eb8a3.nii.gz/MD5E-s4118292--6be4978c4904f764e886904aaf2eb8a3.nii.gz

NYU_2/sub-0025103/ses-1/mri/anon_msub-0025103_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x6/pk/MD5E-s8567391--ebd3d6f9b21c31c8a01b17e9c0b4bb1d.nii.gz/MD5E-s8567391--ebd3d6f9b21c31c8a01b17e9c0b4bb1d.nii.gz

NYU_2/sub-0025103/ses-1/mri/anon_msub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3F/wP/MD5E-s9631640--7dc32e8823f6aec01d34c56f9b165e87.nii.gz/MD5E-s9631640--7dc32e8823f6aec01d34c56f9b165e87.nii.gz

NYU_2/sub-0025103/ses-1/mri/cat_sub-0025103_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xp/KM/MD5E-s83390--00628b218f847057836edeb6944a24de.nii.gz/MD5E-s83390--00628b218f847057836edeb6944a24de.nii.gz

NYU_2/sub-0025103/ses-1/mri/cat_sub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/X2/4v/MD5E-s84172--7cac6b693b6fa7d1e919d841c03ca52d.nii.gz/MD5E-s84172--7cac6b693b6fa7d1e919d841c03ca52d.nii.gz

NYU_2/sub-0025103/ses-1/mri/cobra_sub-0025103_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gv/wm/MD5E-s38717--40eec3414e2ef4e23e676ed2155a13a7.nii.gz/MD5E-s38717--40eec3414e2ef4e23e676ed2155a13a7.nii.gz

NYU_2/sub-0025103/ses-1/mri/cobra_sub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/V8/ZX/MD5E-s38732--29d44d7138e44cbe5efa07cc18c70605.nii.gz/MD5E-s38732--29d44d7138e44cbe5efa07cc18c70605.nii.gz

NYU_2/sub-0025103/ses-1/mri/hammers_sub-0025103_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PM/9m/MD5E-s123667--39ab0c057d371c40b5e40b028d8a5b82.nii.gz/MD5E-s123667--39ab0c057d371c40b5e40b028d8a5b82.nii.gz

NYU_2/sub-0025103/ses-1/mri/hammers_sub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/GM/pZ/MD5E-s123219--52a295d193c0aad4ecb160961c1713fb.nii.gz/MD5E-s123219--52a295d193c0aad4ecb160961c1713fb.nii.gz

NYU_2/sub-0025103/ses-1/mri/ibsr_sub-0025103_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jM/Fp/MD5E-s131697--dc1c22d2b0b66ab14c0c0bf44ab61103.nii.gz/MD5E-s131697--dc1c22d2b0b66ab14c0c0bf44ab61103.nii.gz

NYU_2/sub-0025103/ses-1/mri/ibsr_sub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025103/ses-1/mri/it_sub-0025103_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/20/k5/MD5E-s282--c08e56b8bd24dfa404a2b59dbf6f718a.mat/MD5E-s282--c08e56b8bd24dfa404a2b59dbf6f718a.mat

NYU_2/sub-0025103/ses-1/mri/it_sub-0025103_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/59/PM/MD5E-s283--6a6b1f088ee2070f3f00806dfffda19f.mat/MD5E-s283--6a6b1f088ee2070f3f00806dfffda19f.mat

NYU_2/sub-0025103/ses-1/mri/it_sub-0025103_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fX/MQ/MD5E-s283--3160fb5bb0620923c1fa13c6eec9c140.mat/MD5E-s283--3160fb5bb0620923c1fa13c6eec9c140.mat

NYU_2/sub-0025103/ses-1/mri/it_sub-0025103_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Wj/xP/MD5E-s283--48bf16d8cc2beb85ed8f23a41ab64cd8.mat/MD5E-s283--48bf16d8cc2beb85ed8f23a41ab64cd8.mat

NYU_2/sub-0025103/ses-1/mri/iy_sub-0025103_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5V/wm/MD5E-s34819419--63c5fe5bb2a53b482f9e0daa68972de7.nii.gz/MD5E-s34819419--63c5fe5bb2a53b482f9e0daa68972de7.nii.gz

NYU_2/sub-0025103/ses-1/mri/iy_sub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025103/ses-1/mri/julichbrain_sub-0025103_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7X/KJ/MD5E-s167815--1b912adc1200384f3ca3c8cb9d7b884a.nii.gz/MD5E-s167815--1b912adc1200384f3ca3c8cb9d7b884a.nii.gz

NYU_2/sub-0025103/ses-1/mri/julichbrain_sub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025103/ses-1/mri/lpba40_sub-0025103_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mP/17/MD5E-s122424--f3c0b49c87a6505f2516a9400c473e28.nii.gz/MD5E-s122424--f3c0b49c87a6505f2516a9400c473e28.nii.gz

NYU_2/sub-0025103/ses-1/mri/lpba40_sub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025103/ses-1/mri/m0wp1sub-0025103_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jP/w6/MD5E-s2587702--a82383f22def7d988d88cee7538d5611.nii.gz/MD5E-s2587702--a82383f22def7d988d88cee7538d5611.nii.gz

NYU_2/sub-0025103/ses-1/mri/m0wp1sub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025103/ses-1/mri/m0wp2sub-0025103_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025103/ses-1/mri/m0wp2sub-0025103_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025103/ses-1/mri/m0wp3sub-0025103_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025103/ses-1/mri/m0wp3sub-0025103_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025103/ses-1/mri/mori_sub-0025103_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025103/ses-1/mri/mori_sub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025103/ses-1/mri/mwp1sub-0025103_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025103/ses-1/mri/mwp1sub-0025103_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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