[DATALAD RUNCMD] Compute MRN/sub-0027027/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027027/ses-2/anat/sub-0027027_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027027/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027027/ses-2/label/catROI_sub-0027027_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v1/QM/MD5E-s61199--842afec2dfc4b77f264e95785ff5fc87.mat/MD5E-s61199--842afec2dfc4b77f264e95785ff5fc87.mat

MRN/sub-0027027/ses-2/label/catROI_sub-0027027_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6G/0v/MD5E-s188921--6fedbd8f588eeac17ba4e22bdab89961.xml/MD5E-s188921--6fedbd8f588eeac17ba4e22bdab89961.xml

MRN/sub-0027027/ses-2/label/catROIs_sub-0027027_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4j/ZX/MD5E-s120007--ff96d5f9b0cc441a3337330b18d4592d.mat/MD5E-s120007--ff96d5f9b0cc441a3337330b18d4592d.mat

MRN/sub-0027027/ses-2/label/catROIs_sub-0027027_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w8/VQ/MD5E-s332118--3e3b8b75f4a664b711c9181847c2d0e1.xml/MD5E-s332118--3e3b8b75f4a664b711c9181847c2d0e1.xml

MRN/sub-0027027/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027027_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027027/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027027_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zX/ZQ/MD5E-s171256--23b3986dd5e9e98da7d32ea45d9268a7.nii.gz/MD5E-s171256--23b3986dd5e9e98da7d32ea45d9268a7.nii.gz

MRN/sub-0027027/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027027_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027027/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027027_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z6/48/MD5E-s190736--c218824b5e02a3b0a0f051a759a4886f.nii.gz/MD5E-s190736--c218824b5e02a3b0a0f051a759a4886f.nii.gz

MRN/sub-0027027/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027027_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027027/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027027_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W9/Vm/MD5E-s255096--e713242e6d901ef5cbc28f838a97f822.nii.gz/MD5E-s255096--e713242e6d901ef5cbc28f838a97f822.nii.gz

MRN/sub-0027027/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027027_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027027/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027027_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gq/JV/MD5E-s282607--d375048635902322c933f84422857bad.nii.gz/MD5E-s282607--d375048635902322c933f84422857bad.nii.gz

MRN/sub-0027027/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027027_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027027/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027027_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J0/Z8/MD5E-s25353--8407f2e114f97f8661ccdc7d15f1cb17.nii.gz/MD5E-s25353--8407f2e114f97f8661ccdc7d15f1cb17.nii.gz

MRN/sub-0027027/ses-2/mri/aal3_sub-0027027_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027027/ses-2/mri/aal3_sub-0027027_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027027/ses-2/mri/anatomy3_sub-0027027_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027027/ses-2/mri/anatomy3_sub-0027027_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027027/ses-2/mri/anon_misub-0027027_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7M/2W/MD5E-s9282837--e8591fb82e28ee8f058b894e0dcb9554.nii.gz/MD5E-s9282837--e8591fb82e28ee8f058b894e0dcb9554.nii.gz

MRN/sub-0027027/ses-2/mri/anon_msub-0027027_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5V/W7/MD5E-s10757451--9a6b48f7e7a413051704b43c8dd78210.nii.gz/MD5E-s10757451--9a6b48f7e7a413051704b43c8dd78210.nii.gz

MRN/sub-0027027/ses-2/mri/cat_sub-0027027_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027027/ses-2/mri/cobra_sub-0027027_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027027/ses-2/mri/cobra_sub-0027027_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027027/ses-2/mri/hammers_sub-0027027_ses-2_run-1_T1w.csv

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MRN/sub-0027027/ses-2/mri/hammers_sub-0027027_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027027/ses-2/mri/ibsr_sub-0027027_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027027/ses-2/mri/ibsr_sub-0027027_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027027/ses-2/mri/it_sub-0027027_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G2/3f/MD5E-s285--87cd989d4ef2a4f5e8a2f22c458f4df4.mat/MD5E-s285--87cd989d4ef2a4f5e8a2f22c458f4df4.mat

MRN/sub-0027027/ses-2/mri/it_sub-0027027_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4M/kJ/MD5E-s284--1631ef61c2fe912203a0bb5223e9650b.mat/MD5E-s284--1631ef61c2fe912203a0bb5223e9650b.mat

MRN/sub-0027027/ses-2/mri/iy_sub-0027027_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027027/ses-2/mri/julichbrain_sub-0027027_ses-2_run-1_T1w.csv

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MRN/sub-0027027/ses-2/mri/julichbrain_sub-0027027_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027027/ses-2/mri/lpba40_sub-0027027_ses-2_run-1_T1w.csv

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MRN/sub-0027027/ses-2/mri/lpba40_sub-0027027_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027027/ses-2/mri/m0wp1sub-0027027_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027027/ses-2/mri/m0wp2sub-0027027_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027027/ses-2/mri/m0wp3sub-0027027_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027027/ses-2/mri/mori_sub-0027027_ses-2_run-1_T1w.csv

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MRN/sub-0027027/ses-2/mri/mori_sub-0027027_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027027/ses-2/mri/mwp1sub-0027027_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027027/ses-2/mri/mwp2sub-0027027_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027027/ses-2/mri/mwp3sub-0027027_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027027/ses-2/mri/neuromorphometrics_sub-0027027_ses-2_run-1_T1w.csv

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MRN/sub-0027027/ses-2/mri/neuromorphometrics_sub-0027027_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027027/ses-2/mri/p0sub-0027027_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027027/ses-2/mri/p1sub-0027027_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027027/ses-2/mri/p2sub-0027027_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027027/ses-2/mri/p3sub-0027027_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027027/ses-2/mri/rp1sub-0027027_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027027/ses-2/mri/rp2sub-0027027_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027027/ses-2/mri/rp3sub-0027027_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027027/ses-2/mri/t_sub-0027027_ses-2_run-1_T1w_affine_reorient.mat

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MRN/sub-0027027/ses-2/mri/t_sub-0027027_ses-2_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027027/ses-2/mri/thalamus_sub-0027027_ses-2_run-1_T1w.csv

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MRN/sub-0027027/ses-2/mri/thalamus_sub-0027027_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027027/ses-2/mri/wj_sub-0027027_ses-2_run-1_T1w.nii.gz

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