[DATALAD RUNCMD] Compute BNU_2/sub-0025945/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025945/ses-2/anat/sub-0025945_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025945/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025945/ses-2/label/catROI_sub-0025945_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2k/GF/MD5E-s58035--f79095e653dd9c6d4debd9a61fb142ee.mat/MD5E-s58035--f79095e653dd9c6d4debd9a61fb142ee.mat

BNU_2/sub-0025945/ses-2/label/catROI_sub-0025945_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kg/xP/MD5E-s188449--901f7152d71fed791988f5dafdc9810d.xml/MD5E-s188449--901f7152d71fed791988f5dafdc9810d.xml

BNU_2/sub-0025945/ses-2/label/catROIs_sub-0025945_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V2/5W/MD5E-s119900--2f3c229dbb71394712bc43e48bdaa4c3.mat/MD5E-s119900--2f3c229dbb71394712bc43e48bdaa4c3.mat

BNU_2/sub-0025945/ses-2/label/catROIs_sub-0025945_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/93/qG/MD5E-s332167--534f9611f598215cc76bede20fc66d6c.xml/MD5E-s332167--534f9611f598215cc76bede20fc66d6c.xml

BNU_2/sub-0025945/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025945_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025945/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q5/1K/MD5E-s176408--c7dd3fad713fe8e8fc33ad731749c834.nii.gz/MD5E-s176408--c7dd3fad713fe8e8fc33ad731749c834.nii.gz

BNU_2/sub-0025945/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025945_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025945/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qK/FP/MD5E-s196842--b840f55275a38ae1096de885d981c5e7.nii.gz/MD5E-s196842--b840f55275a38ae1096de885d981c5e7.nii.gz

BNU_2/sub-0025945/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025945_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025945/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1g/Z2/MD5E-s264916--14f9a2b27338adf8b0b9bcc2d5f3c261.nii.gz/MD5E-s264916--14f9a2b27338adf8b0b9bcc2d5f3c261.nii.gz

BNU_2/sub-0025945/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025945_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025945/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9z/6g/MD5E-s293108--41475b67cf4c2a3c63b80f0deea834bf.nii.gz/MD5E-s293108--41475b67cf4c2a3c63b80f0deea834bf.nii.gz

BNU_2/sub-0025945/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025945_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025945/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/93/93/MD5E-s25311--98f2608b9b21b87ed51c27c9ef6fd7a8.nii.gz/MD5E-s25311--98f2608b9b21b87ed51c27c9ef6fd7a8.nii.gz

BNU_2/sub-0025945/ses-2/mri/aal3_sub-0025945_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025945/ses-2/mri/aal3_sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P4/VZ/MD5E-s196075--4be7ca6d7a0045179f8aed48e26d030f.nii.gz/MD5E-s196075--4be7ca6d7a0045179f8aed48e26d030f.nii.gz

BNU_2/sub-0025945/ses-2/mri/anatomy3_sub-0025945_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025945/ses-2/mri/anatomy3_sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qK/ZJ/MD5E-s144833--20144d14e28c392676b069cee8423ad9.nii.gz/MD5E-s144833--20144d14e28c392676b069cee8423ad9.nii.gz

BNU_2/sub-0025945/ses-2/mri/anon_misub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vz/fZ/MD5E-s4879636--654851ddbe6269054c8dcd6758395e47.nii.gz/MD5E-s4879636--654851ddbe6269054c8dcd6758395e47.nii.gz

BNU_2/sub-0025945/ses-2/mri/anon_msub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0G/62/MD5E-s11307373--7c55ffc945009a949477dc815b01a1d0.nii.gz/MD5E-s11307373--7c55ffc945009a949477dc815b01a1d0.nii.gz

BNU_2/sub-0025945/ses-2/mri/cat_sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KF/86/MD5E-s103428--739ff63a14d7d58e4a22354df33a9b59.nii.gz/MD5E-s103428--739ff63a14d7d58e4a22354df33a9b59.nii.gz

BNU_2/sub-0025945/ses-2/mri/cobra_sub-0025945_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025945/ses-2/mri/cobra_sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G9/5w/MD5E-s49627--8a4e04ec2af2836da8ef2aeaf1a8bf7c.nii.gz/MD5E-s49627--8a4e04ec2af2836da8ef2aeaf1a8bf7c.nii.gz

BNU_2/sub-0025945/ses-2/mri/hammers_sub-0025945_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025945/ses-2/mri/hammers_sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/77/fj/MD5E-s155933--298e3792dc6fdad203385d90e64c04da.nii.gz/MD5E-s155933--298e3792dc6fdad203385d90e64c04da.nii.gz

BNU_2/sub-0025945/ses-2/mri/ibsr_sub-0025945_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025945/ses-2/mri/ibsr_sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/ww/MD5E-s164238--6ee3871834ceaca473c910ba5ab3d07f.nii.gz/MD5E-s164238--6ee3871834ceaca473c910ba5ab3d07f.nii.gz

BNU_2/sub-0025945/ses-2/mri/it_sub-0025945_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/65/wQ/MD5E-s283--5a39a4faa0aeccd9fba114eb500dcc31.mat/MD5E-s283--5a39a4faa0aeccd9fba114eb500dcc31.mat

BNU_2/sub-0025945/ses-2/mri/it_sub-0025945_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kx/6m/MD5E-s284--6cbfe8f846864b21e74ae61c30c07858.mat/MD5E-s284--6cbfe8f846864b21e74ae61c30c07858.mat

BNU_2/sub-0025945/ses-2/mri/iy_sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zg/XP/MD5E-s49688973--ebe2d37e327c1a05a853575d5db0be73.nii.gz/MD5E-s49688973--ebe2d37e327c1a05a853575d5db0be73.nii.gz

BNU_2/sub-0025945/ses-2/mri/julichbrain_sub-0025945_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025945/ses-2/mri/julichbrain_sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025945/ses-2/mri/lpba40_sub-0025945_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025945/ses-2/mri/lpba40_sub-0025945_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025945/ses-2/mri/m0wp1sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KV/78/MD5E-s2572890--609dbeaa2fc9bef8e8ba6a55cf17847d.nii.gz/MD5E-s2572890--609dbeaa2fc9bef8e8ba6a55cf17847d.nii.gz

BNU_2/sub-0025945/ses-2/mri/m0wp2sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W6/3W/MD5E-s2281909--aac91034cf014488d1d571dd82554730.nii.gz/MD5E-s2281909--aac91034cf014488d1d571dd82554730.nii.gz

BNU_2/sub-0025945/ses-2/mri/m0wp3sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jk/G6/MD5E-s2455873--f3afd089d923584281abc9e83f509962.nii.gz/MD5E-s2455873--f3afd089d923584281abc9e83f509962.nii.gz

BNU_2/sub-0025945/ses-2/mri/mori_sub-0025945_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025945/ses-2/mri/mori_sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x5/x5/MD5E-s181834--33425f752b9175c51cfea3f19b86191a.nii.gz/MD5E-s181834--33425f752b9175c51cfea3f19b86191a.nii.gz

BNU_2/sub-0025945/ses-2/mri/mwp1sub-0025945_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025945/ses-2/mri/mwp2sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025945/ses-2/mri/mwp3sub-0025945_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025945/ses-2/mri/neuromorphometrics_sub-0025945_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025945/ses-2/mri/neuromorphometrics_sub-0025945_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025945/ses-2/mri/p0sub-0025945_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025945/ses-2/mri/p1sub-0025945_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025945/ses-2/mri/p2sub-0025945_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025945/ses-2/mri/p3sub-0025945_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025945/ses-2/mri/rp1sub-0025945_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025945/ses-2/mri/rp2sub-0025945_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025945/ses-2/mri/rp3sub-0025945_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025945/ses-2/mri/t_sub-0025945_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025945/ses-2/mri/t_sub-0025945_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025945/ses-2/mri/thalamus_sub-0025945_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025945/ses-2/mri/thalamus_sub-0025945_ses-2_run-1_T1w.nii.gz

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