[DATALAD RUNCMD] Compute SWU_4/sub-0025692/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025692/ses-2/anat/sub-0025692_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025692/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025692/ses-2/label/catROI_sub-0025692_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jW/zK/MD5E-s61281--f5a993d6641763002cfa9982229905c9.mat/MD5E-s61281--f5a993d6641763002cfa9982229905c9.mat

SWU_4/sub-0025692/ses-2/label/catROI_sub-0025692_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0z/GK/MD5E-s188761--cb346245db5c344dbf2f508ac8fd7205.xml/MD5E-s188761--cb346245db5c344dbf2f508ac8fd7205.xml

SWU_4/sub-0025692/ses-2/label/catROIs_sub-0025692_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x9/66/MD5E-s119962--033fffbfe3476d885a2fe9676e424fff.mat/MD5E-s119962--033fffbfe3476d885a2fe9676e424fff.mat

SWU_4/sub-0025692/ses-2/label/catROIs_sub-0025692_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/01/pF/MD5E-s332123--5b144208835a6de5865b8e52cb7e66bb.xml/MD5E-s332123--5b144208835a6de5865b8e52cb7e66bb.xml

SWU_4/sub-0025692/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025692_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025692/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z1/vK/MD5E-s173954--1753af14b7cc1fffaeeaf84a2c288732.nii.gz/MD5E-s173954--1753af14b7cc1fffaeeaf84a2c288732.nii.gz

SWU_4/sub-0025692/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025692_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025692/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q4/ZJ/MD5E-s196147--3b884bd3afa56651bab6759c600c8e50.nii.gz/MD5E-s196147--3b884bd3afa56651bab6759c600c8e50.nii.gz

SWU_4/sub-0025692/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025692_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025692/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v6/zX/MD5E-s265277--6ffbfc66101020caa2f825899d7e0bc5.nii.gz/MD5E-s265277--6ffbfc66101020caa2f825899d7e0bc5.nii.gz

SWU_4/sub-0025692/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025692_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025692/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0X/7p/MD5E-s295644--e7ae2f7425d7f6cfe452317c2a2fc854.nii.gz/MD5E-s295644--e7ae2f7425d7f6cfe452317c2a2fc854.nii.gz

SWU_4/sub-0025692/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025692_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025692/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/zJ/MD5E-s25746--22799a81aeb47791a87ffe2bc716e3cd.nii.gz/MD5E-s25746--22799a81aeb47791a87ffe2bc716e3cd.nii.gz

SWU_4/sub-0025692/ses-2/mri/aal3_sub-0025692_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025692/ses-2/mri/aal3_sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QW/M6/MD5E-s197630--dba8879c7bb56d4ce498770d87d17ab3.nii.gz/MD5E-s197630--dba8879c7bb56d4ce498770d87d17ab3.nii.gz

SWU_4/sub-0025692/ses-2/mri/anatomy3_sub-0025692_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025692/ses-2/mri/anatomy3_sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4J/6V/MD5E-s143408--fec1a83dc0940d0ccd231a02eba89880.nii.gz/MD5E-s143408--fec1a83dc0940d0ccd231a02eba89880.nii.gz

SWU_4/sub-0025692/ses-2/mri/anon_misub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QM/2V/MD5E-s11268651--503edf5278696eecb6578541397437e1.nii.gz/MD5E-s11268651--503edf5278696eecb6578541397437e1.nii.gz

SWU_4/sub-0025692/ses-2/mri/anon_msub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5j/0X/MD5E-s12913426--0f0f3a226ebb3ae119d1e8c7b9e9c5c6.nii.gz/MD5E-s12913426--0f0f3a226ebb3ae119d1e8c7b9e9c5c6.nii.gz

SWU_4/sub-0025692/ses-2/mri/cat_sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M7/w9/MD5E-s103971--e0aa654c0b0ada46ec4757a90b7d1fe4.nii.gz/MD5E-s103971--e0aa654c0b0ada46ec4757a90b7d1fe4.nii.gz

SWU_4/sub-0025692/ses-2/mri/cobra_sub-0025692_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025692/ses-2/mri/cobra_sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9Q/Jw/MD5E-s50338--fb9cbc842df444779b691dbe0effdb54.nii.gz/MD5E-s50338--fb9cbc842df444779b691dbe0effdb54.nii.gz

SWU_4/sub-0025692/ses-2/mri/hammers_sub-0025692_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025692/ses-2/mri/hammers_sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k6/ZP/MD5E-s156408--0e4dad6e968583a9d585a04afb4d127b.nii.gz/MD5E-s156408--0e4dad6e968583a9d585a04afb4d127b.nii.gz

SWU_4/sub-0025692/ses-2/mri/ibsr_sub-0025692_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025692/ses-2/mri/ibsr_sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6g/10/MD5E-s163327--b8b6b385bedf101e38eac0f6cc9be45a.nii.gz/MD5E-s163327--b8b6b385bedf101e38eac0f6cc9be45a.nii.gz

SWU_4/sub-0025692/ses-2/mri/it_sub-0025692_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fz/51/MD5E-s282--d5a59dc977831cded1e027826638f36c.mat/MD5E-s282--d5a59dc977831cded1e027826638f36c.mat

SWU_4/sub-0025692/ses-2/mri/it_sub-0025692_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F7/Jw/MD5E-s283--dfb39bf0c4f3e3971ac61a71bb6bc46e.mat/MD5E-s283--dfb39bf0c4f3e3971ac61a71bb6bc46e.mat

SWU_4/sub-0025692/ses-2/mri/iy_sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zQ/4V/MD5E-s50795225--fe8876784b4e1a026fdb28da904d6456.nii.gz/MD5E-s50795225--fe8876784b4e1a026fdb28da904d6456.nii.gz

SWU_4/sub-0025692/ses-2/mri/julichbrain_sub-0025692_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025692/ses-2/mri/julichbrain_sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J3/4K/MD5E-s210994--8461b862aa3485ebe27ae234da2fceb5.nii.gz/MD5E-s210994--8461b862aa3485ebe27ae234da2fceb5.nii.gz

SWU_4/sub-0025692/ses-2/mri/lpba40_sub-0025692_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025692/ses-2/mri/lpba40_sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j7/pj/MD5E-s152521--3ae7152db18553ade43d593ade1819ef.nii.gz/MD5E-s152521--3ae7152db18553ade43d593ade1819ef.nii.gz

SWU_4/sub-0025692/ses-2/mri/m0wp1sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qx/k5/MD5E-s2569982--20aeb13f3c327d7a61be9c784b77175a.nii.gz/MD5E-s2569982--20aeb13f3c327d7a61be9c784b77175a.nii.gz

SWU_4/sub-0025692/ses-2/mri/m0wp2sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ff/pV/MD5E-s2326835--ac134cee4edd3f95e5bfdf68edb09f48.nii.gz/MD5E-s2326835--ac134cee4edd3f95e5bfdf68edb09f48.nii.gz

SWU_4/sub-0025692/ses-2/mri/m0wp3sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fz/Pf/MD5E-s2526047--a57508f9e7d4df50661644b91a43247c.nii.gz/MD5E-s2526047--a57508f9e7d4df50661644b91a43247c.nii.gz

SWU_4/sub-0025692/ses-2/mri/mori_sub-0025692_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025692/ses-2/mri/mori_sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JM/Qz/MD5E-s181389--895bab20866af9c74df4f4daa42b03f3.nii.gz/MD5E-s181389--895bab20866af9c74df4f4daa42b03f3.nii.gz

SWU_4/sub-0025692/ses-2/mri/mwp1sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kV/g2/MD5E-s2570709--7d0667b8b3dcada97f62d0c52584293c.nii.gz/MD5E-s2570709--7d0667b8b3dcada97f62d0c52584293c.nii.gz

SWU_4/sub-0025692/ses-2/mri/mwp2sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fP/94/MD5E-s2324310--9c115a4563efdc766c68369279c09e10.nii.gz/MD5E-s2324310--9c115a4563efdc766c68369279c09e10.nii.gz

SWU_4/sub-0025692/ses-2/mri/mwp3sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kW/p4/MD5E-s2523826--84f86c18327dd61aab7844b3284ceb80.nii.gz/MD5E-s2523826--84f86c18327dd61aab7844b3284ceb80.nii.gz

SWU_4/sub-0025692/ses-2/mri/neuromorphometrics_sub-0025692_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025692/ses-2/mri/neuromorphometrics_sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025692/ses-2/mri/p0sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025692/ses-2/mri/p1sub-0025692_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025692/ses-2/mri/p2sub-0025692_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025692/ses-2/mri/p3sub-0025692_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025692/ses-2/mri/rp1sub-0025692_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025692/ses-2/mri/rp2sub-0025692_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025692/ses-2/mri/rp3sub-0025692_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025692/ses-2/mri/t_sub-0025692_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025692/ses-2/mri/t_sub-0025692_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025692/ses-2/mri/thalamus_sub-0025692_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025692/ses-2/mri/thalamus_sub-0025692_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025692/ses-2/mri/wj_sub-0025692_ses-2_run-1_T1w.nii.gz

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