[DATALAD RUNCMD] Compute LMU_1/sub-0025349/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_1/sub-0025349/ses-1/anat/sub-0025349_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_1/sub-0025349/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_1/sub-0025349/ses-1/label/catROI_sub-0025349_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v7/87/MD5E-s57659--0046e38af0e3c4c6ba15c1d1bf01d509.mat/MD5E-s57659--0046e38af0e3c4c6ba15c1d1bf01d509.mat

LMU_1/sub-0025349/ses-1/label/catROI_sub-0025349_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fw/Wq/MD5E-s189060--96808fdc294b27f8c58b6f15e4063c85.xml/MD5E-s189060--96808fdc294b27f8c58b6f15e4063c85.xml

LMU_1/sub-0025349/ses-1/label/catROIs_sub-0025349_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pW/Q5/MD5E-s119958--5e99c371d808c5d41fbb8816ade6578c.mat/MD5E-s119958--5e99c371d808c5d41fbb8816ade6578c.mat

LMU_1/sub-0025349/ses-1/label/catROIs_sub-0025349_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zz/f4/MD5E-s332105--ebacf2656f750dde60eafcea0713efab.xml/MD5E-s332105--ebacf2656f750dde60eafcea0713efab.xml

LMU_1/sub-0025349/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025349_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_1/sub-0025349/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7j/jG/MD5E-s195613--b2c80d7b0f550a34c271c0701ad25ccb.nii.gz/MD5E-s195613--b2c80d7b0f550a34c271c0701ad25ccb.nii.gz

LMU_1/sub-0025349/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025349_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_1/sub-0025349/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gV/3J/MD5E-s219791--b929da4f7e270ccf4825c8c5ff2f377d.nii.gz/MD5E-s219791--b929da4f7e270ccf4825c8c5ff2f377d.nii.gz

LMU_1/sub-0025349/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025349_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_1/sub-0025349/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mJ/x3/MD5E-s280777--1e5d008074b18dea853849d70a443204.nii.gz/MD5E-s280777--1e5d008074b18dea853849d70a443204.nii.gz

LMU_1/sub-0025349/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025349_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_1/sub-0025349/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p2/PM/MD5E-s311002--e964935aa2594b528d20952e13611fbf.nii.gz/MD5E-s311002--e964935aa2594b528d20952e13611fbf.nii.gz

LMU_1/sub-0025349/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025349_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_1/sub-0025349/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/1j/MD5E-s28837--8869fe8e51cfdde68d5754d4c278a538.nii.gz/MD5E-s28837--8869fe8e51cfdde68d5754d4c278a538.nii.gz

LMU_1/sub-0025349/ses-1/mri/aal3_sub-0025349_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_1/sub-0025349/ses-1/mri/aal3_sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fz/JG/MD5E-s220778--ed23edff0fc182cc784a86e27de7f37a.nii.gz/MD5E-s220778--ed23edff0fc182cc784a86e27de7f37a.nii.gz

LMU_1/sub-0025349/ses-1/mri/anatomy3_sub-0025349_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_1/sub-0025349/ses-1/mri/anatomy3_sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j5/Fz/MD5E-s158646--9b17ff953f4d095300b10f5268e5aecd.nii.gz/MD5E-s158646--9b17ff953f4d095300b10f5268e5aecd.nii.gz

LMU_1/sub-0025349/ses-1/mri/anon_misub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qf/WJ/MD5E-s5445020--666268b3f0fa4af60fba329b17fcd64f.nii.gz/MD5E-s5445020--666268b3f0fa4af60fba329b17fcd64f.nii.gz

LMU_1/sub-0025349/ses-1/mri/anon_msub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kw/q7/MD5E-s12422644--c212a0c9f048655d96888cc3c85518d2.nii.gz/MD5E-s12422644--c212a0c9f048655d96888cc3c85518d2.nii.gz

LMU_1/sub-0025349/ses-1/mri/cat_sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P2/3j/MD5E-s112817--b557a230359ed466ea0e120dbe01f76d.nii.gz/MD5E-s112817--b557a230359ed466ea0e120dbe01f76d.nii.gz

LMU_1/sub-0025349/ses-1/mri/cobra_sub-0025349_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_1/sub-0025349/ses-1/mri/cobra_sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/85/Mq/MD5E-s55945--1b65c3a10274c9f3455efa7e56fe1bf7.nii.gz/MD5E-s55945--1b65c3a10274c9f3455efa7e56fe1bf7.nii.gz

LMU_1/sub-0025349/ses-1/mri/hammers_sub-0025349_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_1/sub-0025349/ses-1/mri/hammers_sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gj/5j/MD5E-s170851--474b58e0df4bf0ecab66b51556a1fda1.nii.gz/MD5E-s170851--474b58e0df4bf0ecab66b51556a1fda1.nii.gz

LMU_1/sub-0025349/ses-1/mri/ibsr_sub-0025349_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_1/sub-0025349/ses-1/mri/ibsr_sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F3/9X/MD5E-s177350--5f75d1dd7b8f057238c7598c1a000dde.nii.gz/MD5E-s177350--5f75d1dd7b8f057238c7598c1a000dde.nii.gz

LMU_1/sub-0025349/ses-1/mri/it_sub-0025349_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qx/pV/MD5E-s282--d8e5fcfee52b38f00ec41a0da4b7b614.mat/MD5E-s282--d8e5fcfee52b38f00ec41a0da4b7b614.mat

LMU_1/sub-0025349/ses-1/mri/it_sub-0025349_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gK/QP/MD5E-s283--1e09a4d9fa53d623e2a350f6435d93d0.mat/MD5E-s283--1e09a4d9fa53d623e2a350f6435d93d0.mat

LMU_1/sub-0025349/ses-1/mri/iy_sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zk/jK/MD5E-s52710008--8f2ef996dd23677d84bd052edbbc7ef7.nii.gz/MD5E-s52710008--8f2ef996dd23677d84bd052edbbc7ef7.nii.gz

LMU_1/sub-0025349/ses-1/mri/julichbrain_sub-0025349_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_1/sub-0025349/ses-1/mri/julichbrain_sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kw/5W/MD5E-s231087--b47cc93bdf652b43510fccd63143e9ea.nii.gz/MD5E-s231087--b47cc93bdf652b43510fccd63143e9ea.nii.gz

LMU_1/sub-0025349/ses-1/mri/lpba40_sub-0025349_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_1/sub-0025349/ses-1/mri/lpba40_sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025349/ses-1/mri/m0wp1sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vx/9Q/MD5E-s2577803--d8b89738a158686da2cd089324dcb949.nii.gz/MD5E-s2577803--d8b89738a158686da2cd089324dcb949.nii.gz

LMU_1/sub-0025349/ses-1/mri/m0wp2sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9P/KQ/MD5E-s2284184--7322e3a5940b3e170088e94a359fab67.nii.gz/MD5E-s2284184--7322e3a5940b3e170088e94a359fab67.nii.gz

LMU_1/sub-0025349/ses-1/mri/m0wp3sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/91/0g/MD5E-s2452684--b1ed672de0274a3577f8e413aa100a36.nii.gz/MD5E-s2452684--b1ed672de0274a3577f8e413aa100a36.nii.gz

LMU_1/sub-0025349/ses-1/mri/mori_sub-0025349_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_1/sub-0025349/ses-1/mri/mori_sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0q/fV/MD5E-s196594--0131ff84f9b39d33961595d0b9c13b17.nii.gz/MD5E-s196594--0131ff84f9b39d33961595d0b9c13b17.nii.gz

LMU_1/sub-0025349/ses-1/mri/mwp1sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pj/xM/MD5E-s2584374--14fec2ea772cbe0a512d3742da4df52d.nii.gz/MD5E-s2584374--14fec2ea772cbe0a512d3742da4df52d.nii.gz

LMU_1/sub-0025349/ses-1/mri/mwp2sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025349/ses-1/mri/mwp3sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025349/ses-1/mri/neuromorphometrics_sub-0025349_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_1/sub-0025349/ses-1/mri/neuromorphometrics_sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025349/ses-1/mri/p0sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/60/fg/MD5E-s714338--ebf210b1d359e4ef50e5bc9b17c489a6.nii.gz/MD5E-s714338--ebf210b1d359e4ef50e5bc9b17c489a6.nii.gz

LMU_1/sub-0025349/ses-1/mri/p1sub-0025349_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025349/ses-1/mri/p2sub-0025349_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025349/ses-1/mri/p3sub-0025349_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025349/ses-1/mri/rp1sub-0025349_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025349/ses-1/mri/rp2sub-0025349_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025349/ses-1/mri/rp3sub-0025349_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025349/ses-1/mri/t_sub-0025349_ses-1_run-1_T1w_affine_reorient.mat

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LMU_1/sub-0025349/ses-1/mri/t_sub-0025349_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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LMU_1/sub-0025349/ses-1/mri/thalamus_sub-0025349_ses-1_run-1_T1w.csv

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LMU_1/sub-0025349/ses-1/mri/thalamus_sub-0025349_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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