[DATALAD RUNCMD] Compute MPG_1/sub-0027434/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MPG_1/sub-0027434/ses-1/anat/sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MPG_1/sub-0027434/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MPG_1/sub-0027434/ses-1/label/catROI_sub-0027434_ses-1_acq-inv1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/17/mp/MD5E-s61548--3518bf37fb3c5717b3946e42efec6c28.mat/MD5E-s61548--3518bf37fb3c5717b3946e42efec6c28.mat

MPG_1/sub-0027434/ses-1/label/catROI_sub-0027434_ses-1_acq-inv1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xf/q6/MD5E-s190042--35cd07020f4a7ccff7a070c7f163cb95.xml/MD5E-s190042--35cd07020f4a7ccff7a070c7f163cb95.xml

MPG_1/sub-0027434/ses-1/label/catROI_sub-0027434_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qG/k7/MD5E-s61376--85bc75ea53eb1d4a6a2ba2df6ae081a1.mat/MD5E-s61376--85bc75ea53eb1d4a6a2ba2df6ae081a1.mat

MPG_1/sub-0027434/ses-1/label/catROI_sub-0027434_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Kw/kW/MD5E-s189681--32674d2f95f564367c3eb311a829c2c6.xml/MD5E-s189681--32674d2f95f564367c3eb311a829c2c6.xml

MPG_1/sub-0027434/ses-1/label/catROIs_sub-0027434_ses-1_acq-inv1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kq/Kp/MD5E-s120426--675b73921a8c995ab847ec3e46ccdc67.mat/MD5E-s120426--675b73921a8c995ab847ec3e46ccdc67.mat

MPG_1/sub-0027434/ses-1/label/catROIs_sub-0027434_ses-1_acq-inv1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mf/zQ/MD5E-s332125--be9137559a7801b2564bf3414cd294a5.xml/MD5E-s332125--be9137559a7801b2564bf3414cd294a5.xml

MPG_1/sub-0027434/ses-1/label/catROIs_sub-0027434_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/m2/p5/MD5E-s120302--d203f00b37db272ec12215c7051fc3ed.mat/MD5E-s120302--d203f00b37db272ec12215c7051fc3ed.mat

MPG_1/sub-0027434/ses-1/label/catROIs_sub-0027434_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zJ/qg/MD5E-s332069--56a9c6cd2e11d3a8ef35c585a91ddfa2.xml/MD5E-s332069--56a9c6cd2e11d3a8ef35c585a91ddfa2.xml

MPG_1/sub-0027434/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3K/jg/MD5E-s346855--a54a246bb320de1ef252b2c1daaf29f7.nii.gz/MD5E-s346855--a54a246bb320de1ef252b2c1daaf29f7.nii.gz

MPG_1/sub-0027434/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0V/p3/MD5E-s337674--3c86f3d4024e0856f92c88cf9fd26721.nii.gz/MD5E-s337674--3c86f3d4024e0856f92c88cf9fd26721.nii.gz

MPG_1/sub-0027434/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J6/xm/MD5E-s386754--c52a28d44f4ba1039d8974caf38e2dc5.nii.gz/MD5E-s386754--c52a28d44f4ba1039d8974caf38e2dc5.nii.gz

MPG_1/sub-0027434/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/k3/FK/MD5E-s376258--181cbf55d77142ad8075cfc2d4164556.nii.gz/MD5E-s376258--181cbf55d77142ad8075cfc2d4164556.nii.gz

MPG_1/sub-0027434/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X4/53/MD5E-s498215--ad06bc3203a448159fd2245e69ae4946.nii.gz/MD5E-s498215--ad06bc3203a448159fd2245e69ae4946.nii.gz

MPG_1/sub-0027434/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/9g/fX/MD5E-s486390--4befe7a4dacda2c1e76ec1c991db0951.nii.gz/MD5E-s486390--4befe7a4dacda2c1e76ec1c991db0951.nii.gz

MPG_1/sub-0027434/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/51/20/MD5E-s552630--f2f820f8c4d59c15de902ccdca676360.nii.gz/MD5E-s552630--f2f820f8c4d59c15de902ccdca676360.nii.gz

MPG_1/sub-0027434/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/jz/mV/MD5E-s538632--e8947e2e15b6b775f2a33f451df4e0a2.nii.gz/MD5E-s538632--e8947e2e15b6b775f2a33f451df4e0a2.nii.gz

MPG_1/sub-0027434/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fz/g0/MD5E-s52922--3bb7fbcb6041d09982881e9ff4c00cdc.nii.gz/MD5E-s52922--3bb7fbcb6041d09982881e9ff4c00cdc.nii.gz

MPG_1/sub-0027434/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/32/4M/MD5E-s51350--437a5e29da7f31667df3f049b083a02d.nii.gz/MD5E-s51350--437a5e29da7f31667df3f049b083a02d.nii.gz

MPG_1/sub-0027434/ses-1/mri/aal3_sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F3/zp/MD5E-s392455--e3d689ef78da95ac5f9c70b117c5cb54.nii.gz/MD5E-s392455--e3d689ef78da95ac5f9c70b117c5cb54.nii.gz

MPG_1/sub-0027434/ses-1/mri/aal3_sub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kQ/0K/MD5E-s378173--3166f9be437159513e37ea147f84edc2.nii.gz/MD5E-s378173--3166f9be437159513e37ea147f84edc2.nii.gz

MPG_1/sub-0027434/ses-1/mri/anatomy3_sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/18/0K/MD5E-s284883--e2a301d32a9e2fb55c68d031990c7306.nii.gz/MD5E-s284883--e2a301d32a9e2fb55c68d031990c7306.nii.gz

MPG_1/sub-0027434/ses-1/mri/anatomy3_sub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/P4/KZ/MD5E-s277957--23f12e9673739cd73c655cec036b4947.nii.gz/MD5E-s277957--23f12e9673739cd73c655cec036b4947.nii.gz

MPG_1/sub-0027434/ses-1/mri/anon_misub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3w/xJ/MD5E-s28786530--393f78fe1f31da4252c5f420b9f1afad.nii.gz/MD5E-s28786530--393f78fe1f31da4252c5f420b9f1afad.nii.gz

MPG_1/sub-0027434/ses-1/mri/anon_misub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/FV/52/MD5E-s29230791--4d410f5cf5725b5df4203edacad9380d.nii.gz/MD5E-s29230791--4d410f5cf5725b5df4203edacad9380d.nii.gz

MPG_1/sub-0027434/ses-1/mri/anon_msub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8m/QP/MD5E-s28790939--b04a342826737190506e00950b0e1f3d.nii.gz/MD5E-s28790939--b04a342826737190506e00950b0e1f3d.nii.gz

MPG_1/sub-0027434/ses-1/mri/anon_msub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/W9/Gq/MD5E-s29228904--659bc8134e3417cc194e67ee8fff017a.nii.gz/MD5E-s29228904--659bc8134e3417cc194e67ee8fff017a.nii.gz

MPG_1/sub-0027434/ses-1/mri/cat_sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g2/64/MD5E-s155490--143094b7a228545fc9b48aaf2193388b.nii.gz/MD5E-s155490--143094b7a228545fc9b48aaf2193388b.nii.gz

MPG_1/sub-0027434/ses-1/mri/cat_sub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8K/jJ/MD5E-s148698--581f749571625046b2f8eac3257e2e2f.nii.gz/MD5E-s148698--581f749571625046b2f8eac3257e2e2f.nii.gz

MPG_1/sub-0027434/ses-1/mri/cobra_sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GF/P4/MD5E-s110857--2a246e9a818a1baa01764e4a346d0c79.nii.gz/MD5E-s110857--2a246e9a818a1baa01764e4a346d0c79.nii.gz

MPG_1/sub-0027434/ses-1/mri/cobra_sub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/QF/Gv/MD5E-s101882--951cad1ed7234f4c0ef67b251d85c525.nii.gz/MD5E-s101882--951cad1ed7234f4c0ef67b251d85c525.nii.gz

MPG_1/sub-0027434/ses-1/mri/hammers_sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vf/FM/MD5E-s303852--58cc4f0ea7f75ade59633585b9b41c5e.nii.gz/MD5E-s303852--58cc4f0ea7f75ade59633585b9b41c5e.nii.gz

MPG_1/sub-0027434/ses-1/mri/hammers_sub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/VP/6w/MD5E-s293777--884d6f3f432dd315a98987435f25c855.nii.gz/MD5E-s293777--884d6f3f432dd315a98987435f25c855.nii.gz

MPG_1/sub-0027434/ses-1/mri/ibsr_sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/qX/MD5E-s323190--9885777eb9cc2b36f8ca55580d88d7e1.nii.gz/MD5E-s323190--9885777eb9cc2b36f8ca55580d88d7e1.nii.gz

MPG_1/sub-0027434/ses-1/mri/ibsr_sub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gf/KV/MD5E-s311311--e258771579889ca2c9f1c47dec81a759.nii.gz/MD5E-s311311--e258771579889ca2c9f1c47dec81a759.nii.gz

MPG_1/sub-0027434/ses-1/mri/it_sub-0027434_ses-1_acq-inv1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1f/j2/MD5E-s282--c8065c4362b343e9181f652e3e3ff500.mat/MD5E-s282--c8065c4362b343e9181f652e3e3ff500.mat

MPG_1/sub-0027434/ses-1/mri/it_sub-0027434_ses-1_acq-inv1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0F/mF/MD5E-s282--151c9798716c809514afd26508072ec4.mat/MD5E-s282--151c9798716c809514afd26508072ec4.mat

MPG_1/sub-0027434/ses-1/mri/it_sub-0027434_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Gz/3J/MD5E-s282--9c1baf1ec088e73bc53087026a4b13ab.mat/MD5E-s282--9c1baf1ec088e73bc53087026a4b13ab.mat

MPG_1/sub-0027434/ses-1/mri/it_sub-0027434_ses-1_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zx/ZW/MD5E-s282--1021ddb2b619d666b8ffb3f5aa4ced80.mat/MD5E-s282--1021ddb2b619d666b8ffb3f5aa4ced80.mat

MPG_1/sub-0027434/ses-1/mri/iy_sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MPG_1/sub-0027434/ses-1/mri/iy_sub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/76/pW/MD5E-s126358691--4b832819747fb012008f8e65cc9cfb59.nii.gz/MD5E-s126358691--4b832819747fb012008f8e65cc9cfb59.nii.gz

MPG_1/sub-0027434/ses-1/mri/julichbrain_sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MPG_1/sub-0027434/ses-1/mri/julichbrain_sub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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MPG_1/sub-0027434/ses-1/mri/lpba40_sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vq/jf/MD5E-s306928--98242be6ef50b4599b4d7f8e01030a44.nii.gz/MD5E-s306928--98242be6ef50b4599b4d7f8e01030a44.nii.gz

MPG_1/sub-0027434/ses-1/mri/lpba40_sub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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MPG_1/sub-0027434/ses-1/mri/m0wp1sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/3f/0J/MD5E-s2515569--a7c8cd0da9cc18f6a0eec78408ceab04.nii.gz/MD5E-s2515569--a7c8cd0da9cc18f6a0eec78408ceab04.nii.gz

MPG_1/sub-0027434/ses-1/mri/m0wp1sub-0027434_ses-1_run-1_T1w.nii.gz

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MPG_1/sub-0027434/ses-1/mri/m0wp2sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MPG_1/sub-0027434/ses-1/mri/m0wp2sub-0027434_ses-1_run-1_T1w.nii.gz

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MPG_1/sub-0027434/ses-1/mri/m0wp3sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

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MPG_1/sub-0027434/ses-1/mri/m0wp3sub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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MPG_1/sub-0027434/ses-1/mri/mori_sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

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MPG_1/sub-0027434/ses-1/mri/mori_sub-0027434_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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MPG_1/sub-0027434/ses-1/mri/mwp1sub-0027434_ses-1_acq-inv1_run-1_T1w.nii.gz

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