[DATALAD RUNCMD] Compute IPCAS_8/sub-0025589/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_8/sub-0025589/ses-1/anat/sub-0025589_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_8/sub-0025589/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_8/sub-0025589/ses-1/label/catROI_sub-0025589_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kJ/fq/MD5E-s61280--a95814987f08330c56085010b23ae66b.mat/MD5E-s61280--a95814987f08330c56085010b23ae66b.mat

IPCAS_8/sub-0025589/ses-1/label/catROI_sub-0025589_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/78/2z/MD5E-s189384--21775b5dcc7f61a79bd1725d1bac54fc.xml/MD5E-s189384--21775b5dcc7f61a79bd1725d1bac54fc.xml

IPCAS_8/sub-0025589/ses-1/label/catROIs_sub-0025589_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k3/2j/MD5E-s120111--582592f65cc47a9b1cc80c79ad55b929.mat/MD5E-s120111--582592f65cc47a9b1cc80c79ad55b929.mat

IPCAS_8/sub-0025589/ses-1/label/catROIs_sub-0025589_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6W/99/MD5E-s332080--f6c500515a36557e9e768edf17e42742.xml/MD5E-s332080--f6c500515a36557e9e768edf17e42742.xml

IPCAS_8/sub-0025589/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025589_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_8/sub-0025589/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025589_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_8/sub-0025589/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025589_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_8/sub-0025589/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025589_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zv/mq/MD5E-s145941--e6b5f7b05e2b73f79f592eabcec21e8f.nii.gz/MD5E-s145941--e6b5f7b05e2b73f79f592eabcec21e8f.nii.gz

IPCAS_8/sub-0025589/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025589_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_8/sub-0025589/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025589_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WF/3j/MD5E-s193219--4bfd4cec005d182d9446c60b5b05f557.nii.gz/MD5E-s193219--4bfd4cec005d182d9446c60b5b05f557.nii.gz

IPCAS_8/sub-0025589/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025589_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_8/sub-0025589/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025589_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GF/mx/MD5E-s215717--ca337395c37dd37abedfe41c204baa39.nii.gz/MD5E-s215717--ca337395c37dd37abedfe41c204baa39.nii.gz

IPCAS_8/sub-0025589/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025589_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_8/sub-0025589/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025589_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/87/X3/MD5E-s18734--fc55912dd85ae5be281aa3fe2809da44.nii.gz/MD5E-s18734--fc55912dd85ae5be281aa3fe2809da44.nii.gz

IPCAS_8/sub-0025589/ses-1/mri/aal3_sub-0025589_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IPCAS_8/sub-0025589/ses-1/mri/aal3_sub-0025589_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X7/Kg/MD5E-s148274--3e2643cb9078567ff9e0e67075d99c83.nii.gz/MD5E-s148274--3e2643cb9078567ff9e0e67075d99c83.nii.gz

IPCAS_8/sub-0025589/ses-1/mri/anatomy3_sub-0025589_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IPCAS_8/sub-0025589/ses-1/mri/anatomy3_sub-0025589_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fv/88/MD5E-s102777--6a8a641627a54111d8e4b05783d5aad0.nii.gz/MD5E-s102777--6a8a641627a54111d8e4b05783d5aad0.nii.gz

IPCAS_8/sub-0025589/ses-1/mri/anon_misub-0025589_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J1/4P/MD5E-s3540656--94ad9692b5d220c54f580bda016caaec.nii.gz/MD5E-s3540656--94ad9692b5d220c54f580bda016caaec.nii.gz

IPCAS_8/sub-0025589/ses-1/mri/anon_msub-0025589_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gV/xG/MD5E-s6246390--768c273e3ecdda8c6f56338e569343e7.nii.gz/MD5E-s6246390--768c273e3ecdda8c6f56338e569343e7.nii.gz

IPCAS_8/sub-0025589/ses-1/mri/cat_sub-0025589_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/cobra_sub-0025589_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_8/sub-0025589/ses-1/mri/cobra_sub-0025589_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/FW/vP/MD5E-s37732--38e1a321a8ad9f9bc1d6168142984e39.nii.gz/MD5E-s37732--38e1a321a8ad9f9bc1d6168142984e39.nii.gz

IPCAS_8/sub-0025589/ses-1/mri/hammers_sub-0025589_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_8/sub-0025589/ses-1/mri/hammers_sub-0025589_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/0x/fz/MD5E-s116930--aee9afc87993fff7f9b7a556836eb944.nii.gz/MD5E-s116930--aee9afc87993fff7f9b7a556836eb944.nii.gz

IPCAS_8/sub-0025589/ses-1/mri/ibsr_sub-0025589_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_8/sub-0025589/ses-1/mri/ibsr_sub-0025589_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/05/MD5E-s122342--3b4dbb3e1de6a5b1dbb38874319caaa2.nii.gz/MD5E-s122342--3b4dbb3e1de6a5b1dbb38874319caaa2.nii.gz

IPCAS_8/sub-0025589/ses-1/mri/it_sub-0025589_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8m/kQ/MD5E-s284--088ff0397f948faf1cad60f18c405204.mat/MD5E-s284--088ff0397f948faf1cad60f18c405204.mat

IPCAS_8/sub-0025589/ses-1/mri/it_sub-0025589_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/14/Q0/MD5E-s283--b7234b52b9f70e1b86438ab7a1c1e524.mat/MD5E-s283--b7234b52b9f70e1b86438ab7a1c1e524.mat

IPCAS_8/sub-0025589/ses-1/mri/iy_sub-0025589_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/julichbrain_sub-0025589_ses-1_run-1_T1w.csv

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IPCAS_8/sub-0025589/ses-1/mri/julichbrain_sub-0025589_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/lpba40_sub-0025589_ses-1_run-1_T1w.csv

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IPCAS_8/sub-0025589/ses-1/mri/lpba40_sub-0025589_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/m0wp1sub-0025589_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/m0wp2sub-0025589_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/m0wp3sub-0025589_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/mori_sub-0025589_ses-1_run-1_T1w.csv

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IPCAS_8/sub-0025589/ses-1/mri/mori_sub-0025589_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/mwp1sub-0025589_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/mwp2sub-0025589_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/mwp3sub-0025589_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/neuromorphometrics_sub-0025589_ses-1_run-1_T1w.csv

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IPCAS_8/sub-0025589/ses-1/mri/neuromorphometrics_sub-0025589_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/p0sub-0025589_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/p1sub-0025589_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/p2sub-0025589_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/p3sub-0025589_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/rp1sub-0025589_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/rp2sub-0025589_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/rp3sub-0025589_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_8/sub-0025589/ses-1/mri/t_sub-0025589_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_8/sub-0025589/ses-1/mri/t_sub-0025589_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_8/sub-0025589/ses-1/mri/thalamus_sub-0025589_ses-1_run-1_T1w.csv

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IPCAS_8/sub-0025589/ses-1/mri/thalamus_sub-0025589_ses-1_run-1_T1w.nii.gz

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