[DATALAD RUNCMD] Compute NYU_2/sub-0025001/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025001/ses-2/anat/sub-0025001_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025001/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025001/ses-2/label/catROI_sub-0025001_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/km/jk/MD5E-s57950--cb5d590fbea720762b7112cdf6bc9fd3.mat/MD5E-s57950--cb5d590fbea720762b7112cdf6bc9fd3.mat

NYU_2/sub-0025001/ses-2/label/catROI_sub-0025001_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Z/55/MD5E-s188879--7bf342cd7ed5229c495430ba5969b8fe.xml/MD5E-s188879--7bf342cd7ed5229c495430ba5969b8fe.xml

NYU_2/sub-0025001/ses-2/label/catROIs_sub-0025001_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3j/qQ/MD5E-s120298--9dee1671171d8957401d521aef57e406.mat/MD5E-s120298--9dee1671171d8957401d521aef57e406.mat

NYU_2/sub-0025001/ses-2/label/catROIs_sub-0025001_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qF/25/MD5E-s332125--64d315ba2189e4f9dedff80cf7179f97.xml/MD5E-s332125--64d315ba2189e4f9dedff80cf7179f97.xml

NYU_2/sub-0025001/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025001_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025001/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7w/3q/MD5E-s147102--2cdb2b0221171e0200b1dacce4fcd1b7.nii.gz/MD5E-s147102--2cdb2b0221171e0200b1dacce4fcd1b7.nii.gz

NYU_2/sub-0025001/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025001_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025001/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fG/Fq/MD5E-s163695--2d50ba5142edd6c72dc2dc0a8d219a20.nii.gz/MD5E-s163695--2d50ba5142edd6c72dc2dc0a8d219a20.nii.gz

NYU_2/sub-0025001/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025001_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025001/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wg/G9/MD5E-s221644--6bbf3f0791b841e29c477fc747af8817.nii.gz/MD5E-s221644--6bbf3f0791b841e29c477fc747af8817.nii.gz

NYU_2/sub-0025001/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025001_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025001/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/XG/MD5E-s245079--1baa7932231f1785b10134ae6295b78c.nii.gz/MD5E-s245079--1baa7932231f1785b10134ae6295b78c.nii.gz

NYU_2/sub-0025001/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025001_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025001/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Q/67/MD5E-s19606--cf3c60c51020caf2de789279eccc247d.nii.gz/MD5E-s19606--cf3c60c51020caf2de789279eccc247d.nii.gz

NYU_2/sub-0025001/ses-2/mri/aal3_sub-0025001_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025001/ses-2/mri/aal3_sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3M/xw/MD5E-s167748--7ff0e714ad1c0c59952477dbe71e3700.nii.gz/MD5E-s167748--7ff0e714ad1c0c59952477dbe71e3700.nii.gz

NYU_2/sub-0025001/ses-2/mri/anatomy3_sub-0025001_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025001/ses-2/mri/anatomy3_sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vP/zw/MD5E-s115525--070dac8a47f3521f4e1ef77867bf41c7.nii.gz/MD5E-s115525--070dac8a47f3521f4e1ef77867bf41c7.nii.gz

NYU_2/sub-0025001/ses-2/mri/anon_misub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kF/4z/MD5E-s3502912--0853f0680ba859b2066af0806009a843.nii.gz/MD5E-s3502912--0853f0680ba859b2066af0806009a843.nii.gz

NYU_2/sub-0025001/ses-2/mri/anon_msub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/04/gW/MD5E-s9224854--d52d2df37b5dc57e1247cebf38739592.nii.gz/MD5E-s9224854--d52d2df37b5dc57e1247cebf38739592.nii.gz

NYU_2/sub-0025001/ses-2/mri/cat_sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kx/xF/MD5E-s88027--a535ccda3d21ee9d6969d719cb7c9cb3.nii.gz/MD5E-s88027--a535ccda3d21ee9d6969d719cb7c9cb3.nii.gz

NYU_2/sub-0025001/ses-2/mri/cobra_sub-0025001_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025001/ses-2/mri/cobra_sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0q/76/MD5E-s40180--92534248cd220b7f253127b17b318ed2.nii.gz/MD5E-s40180--92534248cd220b7f253127b17b318ed2.nii.gz

NYU_2/sub-0025001/ses-2/mri/hammers_sub-0025001_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025001/ses-2/mri/hammers_sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4P/Gk/MD5E-s128112--249776d78d88f7843923ba1250ece619.nii.gz/MD5E-s128112--249776d78d88f7843923ba1250ece619.nii.gz

NYU_2/sub-0025001/ses-2/mri/ibsr_sub-0025001_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025001/ses-2/mri/ibsr_sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kq/GJ/MD5E-s135934--dfef2a0016fe303b8e3d0eda31137b55.nii.gz/MD5E-s135934--dfef2a0016fe303b8e3d0eda31137b55.nii.gz

NYU_2/sub-0025001/ses-2/mri/it_sub-0025001_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k8/vf/MD5E-s282--cd9cad44c9eac0491fefbc6c6df8f432.mat/MD5E-s282--cd9cad44c9eac0491fefbc6c6df8f432.mat

NYU_2/sub-0025001/ses-2/mri/it_sub-0025001_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JM/g2/MD5E-s283--69ca4699bd5ee899b40353df56116834.mat/MD5E-s283--69ca4699bd5ee899b40353df56116834.mat

NYU_2/sub-0025001/ses-2/mri/iy_sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0x/XZ/MD5E-s33672912--d3ca6d11706ec0eab2d91858a255a7b7.nii.gz/MD5E-s33672912--d3ca6d11706ec0eab2d91858a255a7b7.nii.gz

NYU_2/sub-0025001/ses-2/mri/julichbrain_sub-0025001_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU_2/sub-0025001/ses-2/mri/julichbrain_sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m4/p2/MD5E-s172451--3a61550159cc5e9404effae3baa56b70.nii.gz/MD5E-s172451--3a61550159cc5e9404effae3baa56b70.nii.gz

NYU_2/sub-0025001/ses-2/mri/lpba40_sub-0025001_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU_2/sub-0025001/ses-2/mri/lpba40_sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P4/w7/MD5E-s125997--9d629f800e41896e9344a4554d4a05da.nii.gz/MD5E-s125997--9d629f800e41896e9344a4554d4a05da.nii.gz

NYU_2/sub-0025001/ses-2/mri/m0wp1sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZW/QV/MD5E-s2603756--6e3ab305ec7ae5b7dd6e426f39088c1c.nii.gz/MD5E-s2603756--6e3ab305ec7ae5b7dd6e426f39088c1c.nii.gz

NYU_2/sub-0025001/ses-2/mri/m0wp2sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8w/gj/MD5E-s2258357--4476480db87cb2fcc88ec1db8a4b33a0.nii.gz/MD5E-s2258357--4476480db87cb2fcc88ec1db8a4b33a0.nii.gz

NYU_2/sub-0025001/ses-2/mri/m0wp3sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wq/63/MD5E-s2355177--cbeca110162a0a8f9c696826cd014b6b.nii.gz/MD5E-s2355177--cbeca110162a0a8f9c696826cd014b6b.nii.gz

NYU_2/sub-0025001/ses-2/mri/mori_sub-0025001_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025001/ses-2/mri/mori_sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gj/5Z/MD5E-s152586--65e20296ee00c4174fd0c86aa37f0d82.nii.gz/MD5E-s152586--65e20296ee00c4174fd0c86aa37f0d82.nii.gz

NYU_2/sub-0025001/ses-2/mri/mwp1sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qq/9V/MD5E-s2606545--eac8556554a3c79f1bde7b458de8eeb2.nii.gz/MD5E-s2606545--eac8556554a3c79f1bde7b458de8eeb2.nii.gz

NYU_2/sub-0025001/ses-2/mri/mwp2sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W2/0j/MD5E-s2260796--c727ffdca4305861a0a74f53176cd434.nii.gz/MD5E-s2260796--c727ffdca4305861a0a74f53176cd434.nii.gz

NYU_2/sub-0025001/ses-2/mri/mwp3sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XF/2Q/MD5E-s2351468--557c1a51ceaba97f4d9fd1cf505f89c7.nii.gz/MD5E-s2351468--557c1a51ceaba97f4d9fd1cf505f89c7.nii.gz

NYU_2/sub-0025001/ses-2/mri/neuromorphometrics_sub-0025001_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

NYU_2/sub-0025001/ses-2/mri/neuromorphometrics_sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jp/fM/MD5E-s176807--2b4f09e6bef323ce4caa8560e2e8ae06.nii.gz/MD5E-s176807--2b4f09e6bef323ce4caa8560e2e8ae06.nii.gz

NYU_2/sub-0025001/ses-2/mri/p0sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qv/KK/MD5E-s706786--4f3a6a364234d5c8c3916208b575cdc7.nii.gz/MD5E-s706786--4f3a6a364234d5c8c3916208b575cdc7.nii.gz

NYU_2/sub-0025001/ses-2/mri/p1sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025001/ses-2/mri/p2sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jP/Zq/MD5E-s516841--bdff85a32bba480ee2a900efef794477.nii.gz/MD5E-s516841--bdff85a32bba480ee2a900efef794477.nii.gz

NYU_2/sub-0025001/ses-2/mri/p3sub-0025001_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025001/ses-2/mri/rp1sub-0025001_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025001/ses-2/mri/rp2sub-0025001_ses-2_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025001/ses-2/mri/rp3sub-0025001_ses-2_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025001/ses-2/mri/t_sub-0025001_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025001/ses-2/mri/t_sub-0025001_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7g/2q/MD5E-s282--ada821126210b1c130a740716109154e.mat/MD5E-s282--ada821126210b1c130a740716109154e.mat

NYU_2/sub-0025001/ses-2/mri/thalamus_sub-0025001_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025001/ses-2/mri/thalamus_sub-0025001_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MK/v7/MD5E-s12579--0432fd7db080286eda7b299f18b0d9d1.nii.gz/MD5E-s12579--0432fd7db080286eda7b299f18b0d9d1.nii.gz

NYU_2/sub-0025001/ses-2/mri/wj_sub-0025001_ses-2_run-1_T1w.nii.gz

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