[DATALAD RUNCMD] Compute NYU_2/sub-0025056/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025056/ses-1/anat/sub-0025056_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025056/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025056/ses-1/label/catROI_sub-0025056_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g2/4Q/MD5E-s58212--61322a35a914f43d791300bfbc0f4efa.mat/MD5E-s58212--61322a35a914f43d791300bfbc0f4efa.mat

NYU_2/sub-0025056/ses-1/label/catROI_sub-0025056_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7J/m6/MD5E-s188800--c68e0ec8f0a1c68945f08f7882745dac.xml/MD5E-s188800--c68e0ec8f0a1c68945f08f7882745dac.xml

NYU_2/sub-0025056/ses-1/label/catROIs_sub-0025056_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fF/J7/MD5E-s120334--453802631ad352035b74e3bf723d1793.mat/MD5E-s120334--453802631ad352035b74e3bf723d1793.mat

NYU_2/sub-0025056/ses-1/label/catROIs_sub-0025056_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/02/mk/MD5E-s332105--c4f50e52d54c6ac44a36fc982a31b63d.xml/MD5E-s332105--c4f50e52d54c6ac44a36fc982a31b63d.xml

NYU_2/sub-0025056/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025056_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025056/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v0/qm/MD5E-s152140--f5805eb4ea136319676403a243d96ec0.nii.gz/MD5E-s152140--f5805eb4ea136319676403a243d96ec0.nii.gz

NYU_2/sub-0025056/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025056_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025056/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ff/xF/MD5E-s168944--32737e5a075a42981263a03bf182abdf.nii.gz/MD5E-s168944--32737e5a075a42981263a03bf182abdf.nii.gz

NYU_2/sub-0025056/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025056_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025056/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/px/x1/MD5E-s229527--1a87cf5488712aa9e4d28a6443175d14.nii.gz/MD5E-s229527--1a87cf5488712aa9e4d28a6443175d14.nii.gz

NYU_2/sub-0025056/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025056_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025056/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1W/wv/MD5E-s253264--305a3af299d56a479a34b0dce1b825f0.nii.gz/MD5E-s253264--305a3af299d56a479a34b0dce1b825f0.nii.gz

NYU_2/sub-0025056/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025056_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025056/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xm/90/MD5E-s19967--37053ec14d71fd3fc1cb713e89304d87.nii.gz/MD5E-s19967--37053ec14d71fd3fc1cb713e89304d87.nii.gz

NYU_2/sub-0025056/ses-1/mri/aal3_sub-0025056_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025056/ses-1/mri/aal3_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X2/jz/MD5E-s172564--e7e15999a650bb18d53bc283c3ea63d1.nii.gz/MD5E-s172564--e7e15999a650bb18d53bc283c3ea63d1.nii.gz

NYU_2/sub-0025056/ses-1/mri/anatomy3_sub-0025056_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025056/ses-1/mri/anatomy3_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kx/Kk/MD5E-s119880--a66c3fe7511855542048422a3597fbd3.nii.gz/MD5E-s119880--a66c3fe7511855542048422a3597fbd3.nii.gz

NYU_2/sub-0025056/ses-1/mri/anon_misub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V3/37/MD5E-s4262563--d83ab8a2eeaed57adebfc4b4458388ee.nii.gz/MD5E-s4262563--d83ab8a2eeaed57adebfc4b4458388ee.nii.gz

NYU_2/sub-0025056/ses-1/mri/anon_msub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7P/Xv/MD5E-s7571294--048b4242fb79845963de3e8343348e4e.nii.gz/MD5E-s7571294--048b4242fb79845963de3e8343348e4e.nii.gz

NYU_2/sub-0025056/ses-1/mri/cat_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fv/wV/MD5E-s92764--4a7c925ae9d01ae8fe822ca03a1b946c.nii.gz/MD5E-s92764--4a7c925ae9d01ae8fe822ca03a1b946c.nii.gz

NYU_2/sub-0025056/ses-1/mri/cobra_sub-0025056_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025056/ses-1/mri/cobra_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0J/KX/MD5E-s40576--832cda92eb78f4a55dd725602b0a895b.nii.gz/MD5E-s40576--832cda92eb78f4a55dd725602b0a895b.nii.gz

NYU_2/sub-0025056/ses-1/mri/hammers_sub-0025056_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025056/ses-1/mri/hammers_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/26/qJ/MD5E-s131572--ca0afd54c0f5183aba2877e2095500ad.nii.gz/MD5E-s131572--ca0afd54c0f5183aba2877e2095500ad.nii.gz

NYU_2/sub-0025056/ses-1/mri/ibsr_sub-0025056_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025056/ses-1/mri/ibsr_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/30/4k/MD5E-s140177--197e6440b1c41e177f1d9341ce2efec3.nii.gz/MD5E-s140177--197e6440b1c41e177f1d9341ce2efec3.nii.gz

NYU_2/sub-0025056/ses-1/mri/it_sub-0025056_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v6/Gx/MD5E-s283--ab9f33609517aa31499b1173d58247d4.mat/MD5E-s283--ab9f33609517aa31499b1173d58247d4.mat

NYU_2/sub-0025056/ses-1/mri/it_sub-0025056_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/Ff/MD5E-s283--465882f6912847fd3aad61e3b60693db.mat/MD5E-s283--465882f6912847fd3aad61e3b60693db.mat

NYU_2/sub-0025056/ses-1/mri/iy_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fj/zw/MD5E-s36820544--a72e7d0344512e177e3cc1ea2b8e846f.nii.gz/MD5E-s36820544--a72e7d0344512e177e3cc1ea2b8e846f.nii.gz

NYU_2/sub-0025056/ses-1/mri/julichbrain_sub-0025056_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU_2/sub-0025056/ses-1/mri/julichbrain_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PF/gj/MD5E-s179565--e80f9917c77c35ec0c9300342cbc35e2.nii.gz/MD5E-s179565--e80f9917c77c35ec0c9300342cbc35e2.nii.gz

NYU_2/sub-0025056/ses-1/mri/lpba40_sub-0025056_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU_2/sub-0025056/ses-1/mri/lpba40_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xX/pw/MD5E-s130136--42347dabfb30bb518f63665d7694b882.nii.gz/MD5E-s130136--42347dabfb30bb518f63665d7694b882.nii.gz

NYU_2/sub-0025056/ses-1/mri/m0wp1sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k2/m9/MD5E-s2594003--6d98c539583a5ad9d648730e42624851.nii.gz/MD5E-s2594003--6d98c539583a5ad9d648730e42624851.nii.gz

NYU_2/sub-0025056/ses-1/mri/m0wp2sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zW/zW/MD5E-s2284997--ec1124ee387b7c765c5ae169afd9c50c.nii.gz/MD5E-s2284997--ec1124ee387b7c765c5ae169afd9c50c.nii.gz

NYU_2/sub-0025056/ses-1/mri/m0wp3sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JM/2J/MD5E-s2391105--83030bfbe7a803c665fa764f3fb62bf1.nii.gz/MD5E-s2391105--83030bfbe7a803c665fa764f3fb62bf1.nii.gz

NYU_2/sub-0025056/ses-1/mri/mori_sub-0025056_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025056/ses-1/mri/mori_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qx/K5/MD5E-s158472--d4918fae3e32eeeb1cf5e8dae826cfaf.nii.gz/MD5E-s158472--d4918fae3e32eeeb1cf5e8dae826cfaf.nii.gz

NYU_2/sub-0025056/ses-1/mri/mwp1sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gG/8z/MD5E-s2593833--96c741bb7c3650c6952e6338bfd3b120.nii.gz/MD5E-s2593833--96c741bb7c3650c6952e6338bfd3b120.nii.gz

NYU_2/sub-0025056/ses-1/mri/mwp2sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g0/Z5/MD5E-s2283758--c0b1a9160d4db2a07a2c2616b343a1be.nii.gz/MD5E-s2283758--c0b1a9160d4db2a07a2c2616b343a1be.nii.gz

NYU_2/sub-0025056/ses-1/mri/mwp3sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G6/67/MD5E-s2387595--519ca351ee6d20fb6095fb6f04cb9b20.nii.gz/MD5E-s2387595--519ca351ee6d20fb6095fb6f04cb9b20.nii.gz

NYU_2/sub-0025056/ses-1/mri/neuromorphometrics_sub-0025056_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025056/ses-1/mri/neuromorphometrics_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2g/9P/MD5E-s180912--2ed08e84bd942423947ad37e40c854e1.nii.gz/MD5E-s180912--2ed08e84bd942423947ad37e40c854e1.nii.gz

NYU_2/sub-0025056/ses-1/mri/p0sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W8/21/MD5E-s747189--d01eca0a5dbbf628b46c5b5344f98948.nii.gz/MD5E-s747189--d01eca0a5dbbf628b46c5b5344f98948.nii.gz

NYU_2/sub-0025056/ses-1/mri/p1sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wf/Wk/MD5E-s784447--f8ae7bd9847e3403d5547e13aad65760.nii.gz/MD5E-s784447--f8ae7bd9847e3403d5547e13aad65760.nii.gz

NYU_2/sub-0025056/ses-1/mri/p2sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025056/ses-1/mri/p3sub-0025056_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025056/ses-1/mri/rp1sub-0025056_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025056/ses-1/mri/rp2sub-0025056_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025056/ses-1/mri/rp3sub-0025056_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025056/ses-1/mri/t_sub-0025056_ses-1_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025056/ses-1/mri/t_sub-0025056_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w2/5K/MD5E-s283--8a1749d6ba09c0edc615bf1646b1afbe.mat/MD5E-s283--8a1749d6ba09c0edc615bf1646b1afbe.mat

NYU_2/sub-0025056/ses-1/mri/thalamus_sub-0025056_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025056/ses-1/mri/thalamus_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025056/ses-1/mri/wj_sub-0025056_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025056/ses-1/mri/wmisub-0025056_ses-1_run-1_T1w.nii.gz

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