[DATALAD RUNCMD] Compute SWU_2/sub-0027198/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_2/sub-0027198/ses-1/anat/sub-0027198_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_2/sub-0027198/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_2/sub-0027198/ses-1/label/catROI_sub-0027198_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kJ/K5/MD5E-s61330--40068b687598e26c92975def9115074b.mat/MD5E-s61330--40068b687598e26c92975def9115074b.mat

SWU_2/sub-0027198/ses-1/label/catROI_sub-0027198_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7F/6W/MD5E-s189116--6c519d0b6f44549d24896a9dbf7f1d95.xml/MD5E-s189116--6c519d0b6f44549d24896a9dbf7f1d95.xml

SWU_2/sub-0027198/ses-1/label/catROIs_sub-0027198_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wK/p0/MD5E-s120108--8b7e1b99b3d8c8efca0619a507eba739.mat/MD5E-s120108--8b7e1b99b3d8c8efca0619a507eba739.mat

SWU_2/sub-0027198/ses-1/label/catROIs_sub-0027198_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mF/k7/MD5E-s332168--25f0aa24ab7381570684aec5482bedec.xml/MD5E-s332168--25f0aa24ab7381570684aec5482bedec.xml

SWU_2/sub-0027198/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027198_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_2/sub-0027198/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MM/3V/MD5E-s172379--fdf1c8a14f918f1c1b3112a3e8191dc6.nii.gz/MD5E-s172379--fdf1c8a14f918f1c1b3112a3e8191dc6.nii.gz

SWU_2/sub-0027198/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027198_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_2/sub-0027198/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VM/v5/MD5E-s192470--89b03d2bcfe14cb24ac65f400338466d.nii.gz/MD5E-s192470--89b03d2bcfe14cb24ac65f400338466d.nii.gz

SWU_2/sub-0027198/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027198_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_2/sub-0027198/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vm/gw/MD5E-s260112--0d201fa047816d277df640e7ed41e6b5.nii.gz/MD5E-s260112--0d201fa047816d277df640e7ed41e6b5.nii.gz

SWU_2/sub-0027198/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027198_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_2/sub-0027198/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fQ/8W/MD5E-s288782--302ff4932421d231875dfa6c52e1f45b.nii.gz/MD5E-s288782--302ff4932421d231875dfa6c52e1f45b.nii.gz

SWU_2/sub-0027198/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027198_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_2/sub-0027198/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/8p/MD5E-s25438--179211e74f83663ca253e6c60a6b8b83.nii.gz/MD5E-s25438--179211e74f83663ca253e6c60a6b8b83.nii.gz

SWU_2/sub-0027198/ses-1/mri/aal3_sub-0027198_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_2/sub-0027198/ses-1/mri/aal3_sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/46/65/MD5E-s193059--b0cf856b752a13a9b71ea3919857f5eb.nii.gz/MD5E-s193059--b0cf856b752a13a9b71ea3919857f5eb.nii.gz

SWU_2/sub-0027198/ses-1/mri/anatomy3_sub-0027198_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_2/sub-0027198/ses-1/mri/anatomy3_sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wk/3g/MD5E-s141840--fa8d8fd453948bf0da7bd74f6828dd1c.nii.gz/MD5E-s141840--fa8d8fd453948bf0da7bd74f6828dd1c.nii.gz

SWU_2/sub-0027198/ses-1/mri/anon_misub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fg/MF/MD5E-s9290358--83aa5bb5d02d5aa09de8df9f154d74b1.nii.gz/MD5E-s9290358--83aa5bb5d02d5aa09de8df9f154d74b1.nii.gz

SWU_2/sub-0027198/ses-1/mri/anon_msub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9k/92/MD5E-s10491985--1db6a77d25f4724668928a3383f950f1.nii.gz/MD5E-s10491985--1db6a77d25f4724668928a3383f950f1.nii.gz

SWU_2/sub-0027198/ses-1/mri/cat_sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3f/05/MD5E-s103360--9b48dfa07225d4192089948d0769bc99.nii.gz/MD5E-s103360--9b48dfa07225d4192089948d0769bc99.nii.gz

SWU_2/sub-0027198/ses-1/mri/cobra_sub-0027198_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_2/sub-0027198/ses-1/mri/cobra_sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7J/Vg/MD5E-s47906--3fcd56e9d8cd5f7003ca7ca508894d56.nii.gz/MD5E-s47906--3fcd56e9d8cd5f7003ca7ca508894d56.nii.gz

SWU_2/sub-0027198/ses-1/mri/hammers_sub-0027198_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_2/sub-0027198/ses-1/mri/hammers_sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9v/z1/MD5E-s151636--c4d41a93ae3a492d456c9e8b64042bb6.nii.gz/MD5E-s151636--c4d41a93ae3a492d456c9e8b64042bb6.nii.gz

SWU_2/sub-0027198/ses-1/mri/ibsr_sub-0027198_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_2/sub-0027198/ses-1/mri/ibsr_sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X2/8x/MD5E-s161139--ccbb605f24e44ca1c7560edb555e91c9.nii.gz/MD5E-s161139--ccbb605f24e44ca1c7560edb555e91c9.nii.gz

SWU_2/sub-0027198/ses-1/mri/it_sub-0027198_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/qp/MD5E-s283--21959709317875e672e888efab1d505d.mat/MD5E-s283--21959709317875e672e888efab1d505d.mat

SWU_2/sub-0027198/ses-1/mri/it_sub-0027198_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2z/8K/MD5E-s283--2702369e5f0d55a5c50b4ad79e46853c.mat/MD5E-s283--2702369e5f0d55a5c50b4ad79e46853c.mat

SWU_2/sub-0027198/ses-1/mri/iy_sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q7/02/MD5E-s47373005--d15f13f028afcec776e86eac6c23672b.nii.gz/MD5E-s47373005--d15f13f028afcec776e86eac6c23672b.nii.gz

SWU_2/sub-0027198/ses-1/mri/julichbrain_sub-0027198_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_2/sub-0027198/ses-1/mri/julichbrain_sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/85/xv/MD5E-s206966--2c9eee1202cb7f5d2b669db62f593ea0.nii.gz/MD5E-s206966--2c9eee1202cb7f5d2b669db62f593ea0.nii.gz

SWU_2/sub-0027198/ses-1/mri/lpba40_sub-0027198_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_2/sub-0027198/ses-1/mri/lpba40_sub-0027198_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027198/ses-1/mri/m0wp1sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5K/60/MD5E-s2583414--5c9bb5bc47ad3a0841840b53935935ea.nii.gz/MD5E-s2583414--5c9bb5bc47ad3a0841840b53935935ea.nii.gz

SWU_2/sub-0027198/ses-1/mri/m0wp2sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qF/x0/MD5E-s2310579--bbe3d4dc88d3858b48a84b66d90f0549.nii.gz/MD5E-s2310579--bbe3d4dc88d3858b48a84b66d90f0549.nii.gz

SWU_2/sub-0027198/ses-1/mri/m0wp3sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/87/pz/MD5E-s2549028--b49fca08b334f4864304744ae0404091.nii.gz/MD5E-s2549028--b49fca08b334f4864304744ae0404091.nii.gz

SWU_2/sub-0027198/ses-1/mri/mori_sub-0027198_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_2/sub-0027198/ses-1/mri/mori_sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027198/ses-1/mri/mwp1sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QX/2m/MD5E-s2591021--c3579160fd315d6148f6a5c55c4f279a.nii.gz/MD5E-s2591021--c3579160fd315d6148f6a5c55c4f279a.nii.gz

SWU_2/sub-0027198/ses-1/mri/mwp2sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027198/ses-1/mri/mwp3sub-0027198_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027198/ses-1/mri/neuromorphometrics_sub-0027198_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_2/sub-0027198/ses-1/mri/neuromorphometrics_sub-0027198_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027198/ses-1/mri/p0sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/kP/MD5E-s662886--f150d76813cf17cb44df9afa0c4f5eff.nii.gz/MD5E-s662886--f150d76813cf17cb44df9afa0c4f5eff.nii.gz

SWU_2/sub-0027198/ses-1/mri/p1sub-0027198_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027198/ses-1/mri/p2sub-0027198_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027198/ses-1/mri/p3sub-0027198_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027198/ses-1/mri/rp1sub-0027198_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027198/ses-1/mri/rp2sub-0027198_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027198/ses-1/mri/rp3sub-0027198_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027198/ses-1/mri/t_sub-0027198_ses-1_run-1_T1w_affine_reorient.mat

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SWU_2/sub-0027198/ses-1/mri/t_sub-0027198_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_2/sub-0027198/ses-1/mri/thalamus_sub-0027198_ses-1_run-1_T1w.csv

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SWU_2/sub-0027198/ses-1/mri/thalamus_sub-0027198_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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