[DATALAD RUNCMD] Compute NYU_2/sub-0025118/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025118/ses-1/anat/sub-0025118_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025118/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025118/ses-1/label/catROI_sub-0025118_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/6Q/k0/MD5E-s57807--04b0851fe48c2f02ec6edbad86180f91.mat/MD5E-s57807--04b0851fe48c2f02ec6edbad86180f91.mat

NYU_2/sub-0025118/ses-1/label/catROI_sub-0025118_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Fj/P1/MD5E-s188972--c3f8c5b6c9725054a89675df35875cd9.xml/MD5E-s188972--c3f8c5b6c9725054a89675df35875cd9.xml

NYU_2/sub-0025118/ses-1/label/catROI_sub-0025118_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W3/6g/MD5E-s57624--c73391e745cf76b7d82897448cc8d536.mat/MD5E-s57624--c73391e745cf76b7d82897448cc8d536.mat

NYU_2/sub-0025118/ses-1/label/catROI_sub-0025118_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zx/1q/MD5E-s188847--bca463a9bb57a4037964e01b79cd1b3c.xml/MD5E-s188847--bca463a9bb57a4037964e01b79cd1b3c.xml

NYU_2/sub-0025118/ses-1/label/catROIs_sub-0025118_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zK/m1/MD5E-s120157--0a05c52dfc5b69007819757a80850dba.mat/MD5E-s120157--0a05c52dfc5b69007819757a80850dba.mat

NYU_2/sub-0025118/ses-1/label/catROIs_sub-0025118_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0v/k1/MD5E-s332080--1d10349b471e196ca2198e78fb8715fd.xml/MD5E-s332080--1d10349b471e196ca2198e78fb8715fd.xml

NYU_2/sub-0025118/ses-1/label/catROIs_sub-0025118_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K1/kv/MD5E-s120107--6faed5a0f4d5234aafd1241d966dba3a.mat/MD5E-s120107--6faed5a0f4d5234aafd1241d966dba3a.mat

NYU_2/sub-0025118/ses-1/label/catROIs_sub-0025118_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M6/7X/MD5E-s332120--0b34238db3f177304127d74551d3a7e0.xml/MD5E-s332120--0b34238db3f177304127d74551d3a7e0.xml

NYU_2/sub-0025118/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025118_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vX/1k/MD5E-s143419--074b923be9cd3e5797a1448c8a01f05e.nii.gz/MD5E-s143419--074b923be9cd3e5797a1448c8a01f05e.nii.gz

NYU_2/sub-0025118/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025118_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/13/MD5E-s144106--3574d15eaa4e7dd04d4076ff48e1f22b.nii.gz/MD5E-s144106--3574d15eaa4e7dd04d4076ff48e1f22b.nii.gz

NYU_2/sub-0025118/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025118_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/48/1P/MD5E-s160028--ea23f77d06d8bb393fe738a7347a4aa7.nii.gz/MD5E-s160028--ea23f77d06d8bb393fe738a7347a4aa7.nii.gz

NYU_2/sub-0025118/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025118_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qz/ZZ/MD5E-s160433--c47c5362efbad76e89b1bafba1dcc1b0.nii.gz/MD5E-s160433--c47c5362efbad76e89b1bafba1dcc1b0.nii.gz

NYU_2/sub-0025118/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025118_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2W/f0/MD5E-s217783--f6aa32c84ae907774abc4b880a9613f2.nii.gz/MD5E-s217783--f6aa32c84ae907774abc4b880a9613f2.nii.gz

NYU_2/sub-0025118/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025118_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8W/0z/MD5E-s217994--5a60c82bc93461395d87b06d496e7cdf.nii.gz/MD5E-s217994--5a60c82bc93461395d87b06d496e7cdf.nii.gz

NYU_2/sub-0025118/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025118_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/mv/q1/MD5E-s239827--df5131908b341bf5a57bb9c32b25dbd8.nii.gz/MD5E-s239827--df5131908b341bf5a57bb9c32b25dbd8.nii.gz

NYU_2/sub-0025118/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025118_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zz/vk/MD5E-s240801--66c6ad75e3a30600e0afd08afe190963.nii.gz/MD5E-s240801--66c6ad75e3a30600e0afd08afe190963.nii.gz

NYU_2/sub-0025118/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025118_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/f0/zK/MD5E-s19072--e30cbb0b35be1f59e75da89b97737892.nii.gz/MD5E-s19072--e30cbb0b35be1f59e75da89b97737892.nii.gz

NYU_2/sub-0025118/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025118_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/47/WK/MD5E-s19149--4b911da3cdbf0f9198e5b0c8941aec41.nii.gz/MD5E-s19149--4b911da3cdbf0f9198e5b0c8941aec41.nii.gz

NYU_2/sub-0025118/ses-1/mri/aal3_sub-0025118_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/f6/VF/MD5E-s165173--2ab2fe939a833d380f317770ce717b2b.nii.gz/MD5E-s165173--2ab2fe939a833d380f317770ce717b2b.nii.gz

NYU_2/sub-0025118/ses-1/mri/aal3_sub-0025118_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/04/j1/MD5E-s165944--968fbbe00aff46c4be1400cc80580757.nii.gz/MD5E-s165944--968fbbe00aff46c4be1400cc80580757.nii.gz

NYU_2/sub-0025118/ses-1/mri/anatomy3_sub-0025118_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8x/ww/MD5E-s113171--a8643260da85722bc301988b1fa9dadc.nii.gz/MD5E-s113171--a8643260da85722bc301988b1fa9dadc.nii.gz

NYU_2/sub-0025118/ses-1/mri/anatomy3_sub-0025118_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PP/Mv/MD5E-s113644--09d1d8d6f9df1d94b9b106fdd65bea2e.nii.gz/MD5E-s113644--09d1d8d6f9df1d94b9b106fdd65bea2e.nii.gz

NYU_2/sub-0025118/ses-1/mri/anon_misub-0025118_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/X5/23/MD5E-s3799054--05a31f54954917c885312dbba85c733b.nii.gz/MD5E-s3799054--05a31f54954917c885312dbba85c733b.nii.gz

NYU_2/sub-0025118/ses-1/mri/anon_misub-0025118_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WF/Kv/MD5E-s3841311--8280ecafcf3a666ef26d2ab30a7b70f1.nii.gz/MD5E-s3841311--8280ecafcf3a666ef26d2ab30a7b70f1.nii.gz

NYU_2/sub-0025118/ses-1/mri/anon_msub-0025118_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025118/ses-1/mri/anon_msub-0025118_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025118/ses-1/mri/cat_sub-0025118_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Vz/Fx/MD5E-s90487--e5c341a89be00ae416e41bc924033c5b.nii.gz/MD5E-s90487--e5c341a89be00ae416e41bc924033c5b.nii.gz

NYU_2/sub-0025118/ses-1/mri/cat_sub-0025118_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zp/J4/MD5E-s90840--5bc502ff78f401772d89171d8747a7e0.nii.gz/MD5E-s90840--5bc502ff78f401772d89171d8747a7e0.nii.gz

NYU_2/sub-0025118/ses-1/mri/cobra_sub-0025118_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025118/ses-1/mri/cobra_sub-0025118_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025118/ses-1/mri/hammers_sub-0025118_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/73/2P/MD5E-s127193--ce9b3806fa4d442da0409fc24e86ac5e.nii.gz/MD5E-s127193--ce9b3806fa4d442da0409fc24e86ac5e.nii.gz

NYU_2/sub-0025118/ses-1/mri/hammers_sub-0025118_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025118/ses-1/mri/ibsr_sub-0025118_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025118/ses-1/mri/ibsr_sub-0025118_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025118/ses-1/mri/it_sub-0025118_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025118/ses-1/mri/it_sub-0025118_ses-1_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025118/ses-1/mri/it_sub-0025118_ses-1_run-2_T1w_affine_reorient.mat

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NYU_2/sub-0025118/ses-1/mri/it_sub-0025118_ses-1_run-2_T1w_rigid_reorient.mat

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NYU_2/sub-0025118/ses-1/mri/iy_sub-0025118_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025118/ses-1/mri/iy_sub-0025118_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025118/ses-1/mri/julichbrain_sub-0025118_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025118/ses-1/mri/julichbrain_sub-0025118_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025118/ses-1/mri/lpba40_sub-0025118_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025118/ses-1/mri/lpba40_sub-0025118_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025118/ses-1/mri/m0wp1sub-0025118_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025118/ses-1/mri/m0wp1sub-0025118_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025118/ses-1/mri/m0wp2sub-0025118_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025118/ses-1/mri/m0wp2sub-0025118_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025118/ses-1/mri/m0wp3sub-0025118_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025118/ses-1/mri/m0wp3sub-0025118_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025118/ses-1/mri/mori_sub-0025118_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025118/ses-1/mri/mori_sub-0025118_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025118/ses-1/mri/mwp1sub-0025118_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025118/ses-1/mri/mwp1sub-0025118_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025118/ses-1/mri/mwp2sub-0025118_ses-1_run-1_T1w.nii.gz

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