[DATALAD RUNCMD] Compute NYU_2/sub-0025177/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025177/ses-1/anat/sub-0025177_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025177/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025177/ses-1/label/catROI_sub-0025177_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xp/0g/MD5E-s58193--c06a23b0b7ff35f749e396a9ba279866.mat/MD5E-s58193--c06a23b0b7ff35f749e396a9ba279866.mat

NYU_2/sub-0025177/ses-1/label/catROI_sub-0025177_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M8/0q/MD5E-s188759--2b7ca8550fa232570bffde7815ad85d1.xml/MD5E-s188759--2b7ca8550fa232570bffde7815ad85d1.xml

NYU_2/sub-0025177/ses-1/label/catROI_sub-0025177_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/KG/Mq/MD5E-s58081--93abbfed76b50a1290334edcd58e03c0.mat/MD5E-s58081--93abbfed76b50a1290334edcd58e03c0.mat

NYU_2/sub-0025177/ses-1/label/catROI_sub-0025177_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/z2/K3/MD5E-s188708--9b6951f567a6e56e1ca02a97266685f4.xml/MD5E-s188708--9b6951f567a6e56e1ca02a97266685f4.xml

NYU_2/sub-0025177/ses-1/label/catROIs_sub-0025177_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/93/5Z/MD5E-s120311--0ab7c7a70089a6f4de5cedfacd1e9bfc.mat/MD5E-s120311--0ab7c7a70089a6f4de5cedfacd1e9bfc.mat

NYU_2/sub-0025177/ses-1/label/catROIs_sub-0025177_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/02/1W/MD5E-s332153--a6d64dc50d2f88d22c2324818777c70b.xml/MD5E-s332153--a6d64dc50d2f88d22c2324818777c70b.xml

NYU_2/sub-0025177/ses-1/label/catROIs_sub-0025177_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Pz/51/MD5E-s120302--5647d20b79f3c1ac8813b2dde5cbd935.mat/MD5E-s120302--5647d20b79f3c1ac8813b2dde5cbd935.mat

NYU_2/sub-0025177/ses-1/label/catROIs_sub-0025177_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/G0/Zz/MD5E-s332177--67e592d7efa64e4714559c2c5375cd5c.xml/MD5E-s332177--67e592d7efa64e4714559c2c5375cd5c.xml

NYU_2/sub-0025177/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x8/9p/MD5E-s154825--fc0a941a04f838e53a77ac574ba5d664.nii.gz/MD5E-s154825--fc0a941a04f838e53a77ac574ba5d664.nii.gz

NYU_2/sub-0025177/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025177_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/p6/zv/MD5E-s153610--7593e146d8caff22150351e225687355.nii.gz/MD5E-s153610--7593e146d8caff22150351e225687355.nii.gz

NYU_2/sub-0025177/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4P/vM/MD5E-s171954--09f7bc7d0390fbba9e7f6b0c48cdfc17.nii.gz/MD5E-s171954--09f7bc7d0390fbba9e7f6b0c48cdfc17.nii.gz

NYU_2/sub-0025177/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025177_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Mm/7K/MD5E-s170241--022cc172187c49275454d1789c9402f3.nii.gz/MD5E-s170241--022cc172187c49275454d1789c9402f3.nii.gz

NYU_2/sub-0025177/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/57/wg/MD5E-s231434--a6777defd4dbe8bfaa2fc283cf6b1dca.nii.gz/MD5E-s231434--a6777defd4dbe8bfaa2fc283cf6b1dca.nii.gz

NYU_2/sub-0025177/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025177_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/65/7G/MD5E-s230204--2f7328eeb886ffbe309c8c186f434c23.nii.gz/MD5E-s230204--2f7328eeb886ffbe309c8c186f434c23.nii.gz

NYU_2/sub-0025177/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/91/47/MD5E-s256868--476efff81cbaa099e69984f19b57512e.nii.gz/MD5E-s256868--476efff81cbaa099e69984f19b57512e.nii.gz

NYU_2/sub-0025177/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025177_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5p/43/MD5E-s254239--7c401bca00966da22918bb58f53a0bae.nii.gz/MD5E-s254239--7c401bca00966da22918bb58f53a0bae.nii.gz

NYU_2/sub-0025177/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3j/48/MD5E-s19483--9d0e32a6b4fbb749646e6f8de07c1ace.nii.gz/MD5E-s19483--9d0e32a6b4fbb749646e6f8de07c1ace.nii.gz

NYU_2/sub-0025177/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025177_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8J/41/MD5E-s19445--c2d1ff57597cc4b772d2c133b5dd63a7.nii.gz/MD5E-s19445--c2d1ff57597cc4b772d2c133b5dd63a7.nii.gz

NYU_2/sub-0025177/ses-1/mri/aal3_sub-0025177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0J/XK/MD5E-s172772--1451fd5992353eb11e732de678f83919.nii.gz/MD5E-s172772--1451fd5992353eb11e732de678f83919.nii.gz

NYU_2/sub-0025177/ses-1/mri/aal3_sub-0025177_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/jV/8z/MD5E-s171033--6c20ceff63fc06115912610baee21721.nii.gz/MD5E-s171033--6c20ceff63fc06115912610baee21721.nii.gz

NYU_2/sub-0025177/ses-1/mri/anatomy3_sub-0025177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1q/5W/MD5E-s124206--f3e0ba75c24dc98e51a418651cac24fe.nii.gz/MD5E-s124206--f3e0ba75c24dc98e51a418651cac24fe.nii.gz

NYU_2/sub-0025177/ses-1/mri/anatomy3_sub-0025177_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/57/xf/MD5E-s122904--5ca1c2c38c8af6c17cd29cc896948afb.nii.gz/MD5E-s122904--5ca1c2c38c8af6c17cd29cc896948afb.nii.gz

NYU_2/sub-0025177/ses-1/mri/anon_misub-0025177_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/1M/6k/MD5E-s3786921--1df342b0fe4267cbdfb25448dbb59bce.nii.gz/MD5E-s3786921--1df342b0fe4267cbdfb25448dbb59bce.nii.gz

NYU_2/sub-0025177/ses-1/mri/anon_misub-0025177_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vP/g9/MD5E-s3869643--97a3e2443313049ee011dfdc1f34d8b6.nii.gz/MD5E-s3869643--97a3e2443313049ee011dfdc1f34d8b6.nii.gz

NYU_2/sub-0025177/ses-1/mri/anon_msub-0025177_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/kQ/XF/MD5E-s7299400--524e5a6d97aef7b5baaa1358545ba266.nii.gz/MD5E-s7299400--524e5a6d97aef7b5baaa1358545ba266.nii.gz

NYU_2/sub-0025177/ses-1/mri/anon_msub-0025177_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/38/P2/MD5E-s7365116--4c07f38a47ebe922ba7269a40c3ee4ca.nii.gz/MD5E-s7365116--4c07f38a47ebe922ba7269a40c3ee4ca.nii.gz

NYU_2/sub-0025177/ses-1/mri/cat_sub-0025177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kv/J0/MD5E-s94896--b170b4596061235800ded86ee4e40776.nii.gz/MD5E-s94896--b170b4596061235800ded86ee4e40776.nii.gz

NYU_2/sub-0025177/ses-1/mri/cat_sub-0025177_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/51/Z4/MD5E-s89798--ecb7375c76fd6fce41ce9ffe616e7077.nii.gz/MD5E-s89798--ecb7375c76fd6fce41ce9ffe616e7077.nii.gz

NYU_2/sub-0025177/ses-1/mri/cobra_sub-0025177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fG/j8/MD5E-s41070--43e8f859dc7feddf011184a23edf7852.nii.gz/MD5E-s41070--43e8f859dc7feddf011184a23edf7852.nii.gz

NYU_2/sub-0025177/ses-1/mri/cobra_sub-0025177_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025177/ses-1/mri/hammers_sub-0025177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025177/ses-1/mri/hammers_sub-0025177_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025177/ses-1/mri/ibsr_sub-0025177_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025177/ses-1/mri/ibsr_sub-0025177_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025177/ses-1/mri/it_sub-0025177_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M0/fw/MD5E-s284--1f5efcf0428507cb15b996032e730e0d.mat/MD5E-s284--1f5efcf0428507cb15b996032e730e0d.mat

NYU_2/sub-0025177/ses-1/mri/it_sub-0025177_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JF/Ww/MD5E-s283--1ad8dfa9004e61ee1fbb15f517384f94.mat/MD5E-s283--1ad8dfa9004e61ee1fbb15f517384f94.mat

NYU_2/sub-0025177/ses-1/mri/it_sub-0025177_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025177/ses-1/mri/it_sub-0025177_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025177/ses-1/mri/iy_sub-0025177_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025177/ses-1/mri/iy_sub-0025177_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025177/ses-1/mri/julichbrain_sub-0025177_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025177/ses-1/mri/julichbrain_sub-0025177_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025177/ses-1/mri/lpba40_sub-0025177_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025177/ses-1/mri/lpba40_sub-0025177_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025177/ses-1/mri/m0wp1sub-0025177_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025177/ses-1/mri/m0wp1sub-0025177_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025177/ses-1/mri/m0wp2sub-0025177_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025177/ses-1/mri/m0wp2sub-0025177_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025177/ses-1/mri/m0wp3sub-0025177_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025177/ses-1/mri/m0wp3sub-0025177_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025177/ses-1/mri/mori_sub-0025177_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025177/ses-1/mri/mori_sub-0025177_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025177/ses-1/mri/mwp1sub-0025177_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025177/ses-1/mri/mwp1sub-0025177_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025177/ses-1/mri/mwp2sub-0025177_ses-1_run-1_T1w.nii.gz

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