[DATALAD RUNCMD] Compute LMU_1/sub-0025342/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_1/sub-0025342/ses-1/anat/sub-0025342_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_1/sub-0025342/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_1/sub-0025342/ses-1/label/catROI_sub-0025342_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5X/K0/MD5E-s57651--2c06074e73bbcbb5791f35be28bfb442.mat/MD5E-s57651--2c06074e73bbcbb5791f35be28bfb442.mat

LMU_1/sub-0025342/ses-1/label/catROI_sub-0025342_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g9/4z/MD5E-s188903--608bd1325e575d6e6c90409a4a7f7d98.xml/MD5E-s188903--608bd1325e575d6e6c90409a4a7f7d98.xml

LMU_1/sub-0025342/ses-1/label/catROIs_sub-0025342_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vX/65/MD5E-s119981--2ced1b66c43510b1698da4fa31aadd75.mat/MD5E-s119981--2ced1b66c43510b1698da4fa31aadd75.mat

LMU_1/sub-0025342/ses-1/label/catROIs_sub-0025342_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/81/gM/MD5E-s332123--9ca78f47efe393db643d513fdd035f38.xml/MD5E-s332123--9ca78f47efe393db643d513fdd035f38.xml

LMU_1/sub-0025342/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025342_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_1/sub-0025342/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jk/4w/MD5E-s197942--97ea1618e1fdf2c9e3aaa04c2e26123c.nii.gz/MD5E-s197942--97ea1618e1fdf2c9e3aaa04c2e26123c.nii.gz

LMU_1/sub-0025342/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025342_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_1/sub-0025342/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZZ/G9/MD5E-s223189--1bc0127711a33767270016c4db57e170.nii.gz/MD5E-s223189--1bc0127711a33767270016c4db57e170.nii.gz

LMU_1/sub-0025342/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025342_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_1/sub-0025342/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/07/WM/MD5E-s285090--53be465e95f7ed85e0ba0e788f1170de.nii.gz/MD5E-s285090--53be465e95f7ed85e0ba0e788f1170de.nii.gz

LMU_1/sub-0025342/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025342_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_1/sub-0025342/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zJ/JK/MD5E-s316039--e05b7fc4a94bd485bb4f5a5e553899a7.nii.gz/MD5E-s316039--e05b7fc4a94bd485bb4f5a5e553899a7.nii.gz

LMU_1/sub-0025342/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025342_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_1/sub-0025342/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/74/Fk/MD5E-s28944--37797dc1b5e13df174059673d0a08ec1.nii.gz/MD5E-s28944--37797dc1b5e13df174059673d0a08ec1.nii.gz

LMU_1/sub-0025342/ses-1/mri/aal3_sub-0025342_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_1/sub-0025342/ses-1/mri/aal3_sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wG/19/MD5E-s226275--72ce737af5dc3c82403cf9a063529ced.nii.gz/MD5E-s226275--72ce737af5dc3c82403cf9a063529ced.nii.gz

LMU_1/sub-0025342/ses-1/mri/anatomy3_sub-0025342_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_1/sub-0025342/ses-1/mri/anatomy3_sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4Q/pZ/MD5E-s159746--e61d2d8bc1c6d64cb9e0c8ccfc4183aa.nii.gz/MD5E-s159746--e61d2d8bc1c6d64cb9e0c8ccfc4183aa.nii.gz

LMU_1/sub-0025342/ses-1/mri/anon_misub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/47/ZJ/MD5E-s5731508--2d01d866396586f130c13772946b91e6.nii.gz/MD5E-s5731508--2d01d866396586f130c13772946b91e6.nii.gz

LMU_1/sub-0025342/ses-1/mri/anon_msub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xK/jZ/MD5E-s9424915--efe20ccf66702de384429abdc215745c.nii.gz/MD5E-s9424915--efe20ccf66702de384429abdc215745c.nii.gz

LMU_1/sub-0025342/ses-1/mri/cat_sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3K/8j/MD5E-s117671--bbbafa9897a918e58d85f13c6f55c6e5.nii.gz/MD5E-s117671--bbbafa9897a918e58d85f13c6f55c6e5.nii.gz

LMU_1/sub-0025342/ses-1/mri/cobra_sub-0025342_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_1/sub-0025342/ses-1/mri/cobra_sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6V/FV/MD5E-s58366--1f46c1c03ed9cc1c422291b81a1e2882.nii.gz/MD5E-s58366--1f46c1c03ed9cc1c422291b81a1e2882.nii.gz

LMU_1/sub-0025342/ses-1/mri/hammers_sub-0025342_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_1/sub-0025342/ses-1/mri/hammers_sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q3/Xf/MD5E-s175326--af3c89c5b3df16f6f3da0c83dc619cda.nii.gz/MD5E-s175326--af3c89c5b3df16f6f3da0c83dc619cda.nii.gz

LMU_1/sub-0025342/ses-1/mri/ibsr_sub-0025342_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_1/sub-0025342/ses-1/mri/ibsr_sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f3/Zp/MD5E-s182661--68c2ebc7cca98eb045999766a13c3ac6.nii.gz/MD5E-s182661--68c2ebc7cca98eb045999766a13c3ac6.nii.gz

LMU_1/sub-0025342/ses-1/mri/it_sub-0025342_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZQ/XQ/MD5E-s283--6c5feb370b852f534b751ff5a1a5f1ff.mat/MD5E-s283--6c5feb370b852f534b751ff5a1a5f1ff.mat

LMU_1/sub-0025342/ses-1/mri/it_sub-0025342_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KJ/3f/MD5E-s283--f17b8c9c8cc124ce2297838fe208d4d8.mat/MD5E-s283--f17b8c9c8cc124ce2297838fe208d4d8.mat

LMU_1/sub-0025342/ses-1/mri/iy_sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K4/mz/MD5E-s52105450--f41df15f721549cdf30d27ccbc3245aa.nii.gz/MD5E-s52105450--f41df15f721549cdf30d27ccbc3245aa.nii.gz

LMU_1/sub-0025342/ses-1/mri/julichbrain_sub-0025342_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_1/sub-0025342/ses-1/mri/julichbrain_sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/Pg/MD5E-s234577--89a4138a54c263c6f31d9b50146d7891.nii.gz/MD5E-s234577--89a4138a54c263c6f31d9b50146d7891.nii.gz

LMU_1/sub-0025342/ses-1/mri/lpba40_sub-0025342_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_1/sub-0025342/ses-1/mri/lpba40_sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jk/v6/MD5E-s174225--731ff1d756d91f9c6e0471574a7904c2.nii.gz/MD5E-s174225--731ff1d756d91f9c6e0471574a7904c2.nii.gz

LMU_1/sub-0025342/ses-1/mri/m0wp1sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/12/6z/MD5E-s2579087--f240a3a1786beabc754c016c7b095186.nii.gz/MD5E-s2579087--f240a3a1786beabc754c016c7b095186.nii.gz

LMU_1/sub-0025342/ses-1/mri/m0wp2sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1P/gV/MD5E-s2317541--75e75fb41969e20684f649a94d1d5ad4.nii.gz/MD5E-s2317541--75e75fb41969e20684f649a94d1d5ad4.nii.gz

LMU_1/sub-0025342/ses-1/mri/m0wp3sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/x8/MD5E-s2456509--ba7cd70671c2c0bc3055766228031483.nii.gz/MD5E-s2456509--ba7cd70671c2c0bc3055766228031483.nii.gz

LMU_1/sub-0025342/ses-1/mri/mori_sub-0025342_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_1/sub-0025342/ses-1/mri/mori_sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v7/31/MD5E-s203155--c0499dbb5fd36da8759808d9890645f5.nii.gz/MD5E-s203155--c0499dbb5fd36da8759808d9890645f5.nii.gz

LMU_1/sub-0025342/ses-1/mri/mwp1sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7z/Z7/MD5E-s2583652--d98cb0a9e319e2d09acd88cf24ba654b.nii.gz/MD5E-s2583652--d98cb0a9e319e2d09acd88cf24ba654b.nii.gz

LMU_1/sub-0025342/ses-1/mri/mwp2sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4q/2Q/MD5E-s2318425--333d99c25daefbdd331e5bfcf599a9a8.nii.gz/MD5E-s2318425--333d99c25daefbdd331e5bfcf599a9a8.nii.gz

LMU_1/sub-0025342/ses-1/mri/mwp3sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025342/ses-1/mri/neuromorphometrics_sub-0025342_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

LMU_1/sub-0025342/ses-1/mri/neuromorphometrics_sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025342/ses-1/mri/p0sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fq/kZ/MD5E-s736138--83f43644e7535ef3a668c8d149e3c253.nii.gz/MD5E-s736138--83f43644e7535ef3a668c8d149e3c253.nii.gz

LMU_1/sub-0025342/ses-1/mri/p1sub-0025342_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025342/ses-1/mri/p2sub-0025342_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025342/ses-1/mri/p3sub-0025342_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025342/ses-1/mri/rp1sub-0025342_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025342/ses-1/mri/rp2sub-0025342_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025342/ses-1/mri/rp3sub-0025342_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025342/ses-1/mri/t_sub-0025342_ses-1_run-1_T1w_affine_reorient.mat

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LMU_1/sub-0025342/ses-1/mri/t_sub-0025342_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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LMU_1/sub-0025342/ses-1/mri/thalamus_sub-0025342_ses-1_run-1_T1w.csv

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LMU_1/sub-0025342/ses-1/mri/thalamus_sub-0025342_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025342/ses-1/mri/wj_sub-0025342_ses-1_run-1_T1w.nii.gz

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