[DATALAD RUNCMD] Compute NYU_2/sub-0025006/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025006/ses-2/anat/sub-0025006_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025006/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025006/ses-2/label/catROI_sub-0025006_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xq/64/MD5E-s58293--0e89ccfd593f6b980d65a708f3c96bdd.mat/MD5E-s58293--0e89ccfd593f6b980d65a708f3c96bdd.mat

NYU_2/sub-0025006/ses-2/label/catROI_sub-0025006_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vw/g6/MD5E-s188681--7c8861542ef02792318c495966c3dc6c.xml/MD5E-s188681--7c8861542ef02792318c495966c3dc6c.xml

NYU_2/sub-0025006/ses-2/label/catROIs_sub-0025006_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vw/XK/MD5E-s120249--45d11f188c1503b80a65dfc366a5a5c9.mat/MD5E-s120249--45d11f188c1503b80a65dfc366a5a5c9.mat

NYU_2/sub-0025006/ses-2/label/catROIs_sub-0025006_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mq/JW/MD5E-s332085--e5e6ac5655faa6754ed2d8cd326be4fb.xml/MD5E-s332085--e5e6ac5655faa6754ed2d8cd326be4fb.xml

NYU_2/sub-0025006/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025006_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025006/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vZ/G2/MD5E-s158485--578aa1c54b3fadce2b3be0e157d0f5ad.nii.gz/MD5E-s158485--578aa1c54b3fadce2b3be0e157d0f5ad.nii.gz

NYU_2/sub-0025006/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025006_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025006/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jm/K6/MD5E-s177057--2815f1f741afc3919ffbe40e1039dfbc.nii.gz/MD5E-s177057--2815f1f741afc3919ffbe40e1039dfbc.nii.gz

NYU_2/sub-0025006/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025006_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025006/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z1/9Z/MD5E-s236518--e3c4a0d4c9c87e03c8fc0d0b033bf988.nii.gz/MD5E-s236518--e3c4a0d4c9c87e03c8fc0d0b033bf988.nii.gz

NYU_2/sub-0025006/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025006_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025006/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2P/8f/MD5E-s264019--822b24dadef6933cbc9e9e9e92114468.nii.gz/MD5E-s264019--822b24dadef6933cbc9e9e9e92114468.nii.gz

NYU_2/sub-0025006/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025006_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025006/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vJ/W6/MD5E-s19984--217da0022dfea7e29c1e38261ec96e75.nii.gz/MD5E-s19984--217da0022dfea7e29c1e38261ec96e75.nii.gz

NYU_2/sub-0025006/ses-2/mri/aal3_sub-0025006_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025006/ses-2/mri/aal3_sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/64/Fq/MD5E-s178241--0bd1d54ee18f2bb44b6e188aa77f51ea.nii.gz/MD5E-s178241--0bd1d54ee18f2bb44b6e188aa77f51ea.nii.gz

NYU_2/sub-0025006/ses-2/mri/anatomy3_sub-0025006_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025006/ses-2/mri/anatomy3_sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/28/Fv/MD5E-s127387--a31eab7b73f1465be7a093c25dbf0664.nii.gz/MD5E-s127387--a31eab7b73f1465be7a093c25dbf0664.nii.gz

NYU_2/sub-0025006/ses-2/mri/anon_misub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/95/MW/MD5E-s3915343--3e629c3548562885a4a6166d8725bb6e.nii.gz/MD5E-s3915343--3e629c3548562885a4a6166d8725bb6e.nii.gz

NYU_2/sub-0025006/ses-2/mri/anon_msub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3k/VX/MD5E-s7530808--957c4117f40d0a87b03d028b2140287b.nii.gz/MD5E-s7530808--957c4117f40d0a87b03d028b2140287b.nii.gz

NYU_2/sub-0025006/ses-2/mri/cat_sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1F/gf/MD5E-s97252--cba1131c951fcadc1b8bc534d71157ab.nii.gz/MD5E-s97252--cba1131c951fcadc1b8bc534d71157ab.nii.gz

NYU_2/sub-0025006/ses-2/mri/cobra_sub-0025006_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025006/ses-2/mri/cobra_sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8z/q1/MD5E-s43192--82587434abfa3620937bb3e466f1203d.nii.gz/MD5E-s43192--82587434abfa3620937bb3e466f1203d.nii.gz

NYU_2/sub-0025006/ses-2/mri/hammers_sub-0025006_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025006/ses-2/mri/hammers_sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/84/KP/MD5E-s139327--7a82939bbc22d5b9af2f6f3dcee5b473.nii.gz/MD5E-s139327--7a82939bbc22d5b9af2f6f3dcee5b473.nii.gz

NYU_2/sub-0025006/ses-2/mri/ibsr_sub-0025006_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025006/ses-2/mri/ibsr_sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9z/85/MD5E-s146487--5761fc49f623a14fa0e7bc19ad83d715.nii.gz/MD5E-s146487--5761fc49f623a14fa0e7bc19ad83d715.nii.gz

NYU_2/sub-0025006/ses-2/mri/it_sub-0025006_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qm/mk/MD5E-s283--8181c69024b3ffad2f27595943ae50fb.mat/MD5E-s283--8181c69024b3ffad2f27595943ae50fb.mat

NYU_2/sub-0025006/ses-2/mri/it_sub-0025006_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q4/36/MD5E-s283--dd22d425318be108f3683a39eca6d017.mat/MD5E-s283--dd22d425318be108f3683a39eca6d017.mat

NYU_2/sub-0025006/ses-2/mri/iy_sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4P/qw/MD5E-s37285292--fef38d7794d7f1228506f41bc489d100.nii.gz/MD5E-s37285292--fef38d7794d7f1228506f41bc489d100.nii.gz

NYU_2/sub-0025006/ses-2/mri/julichbrain_sub-0025006_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU_2/sub-0025006/ses-2/mri/julichbrain_sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2K/w0/MD5E-s189057--4576dc2005c5016e431f094ba9e1ad7b.nii.gz/MD5E-s189057--4576dc2005c5016e431f094ba9e1ad7b.nii.gz

NYU_2/sub-0025006/ses-2/mri/lpba40_sub-0025006_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU_2/sub-0025006/ses-2/mri/lpba40_sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xW/2m/MD5E-s136887--d2ba884e40575448524546b0c0dc7215.nii.gz/MD5E-s136887--d2ba884e40575448524546b0c0dc7215.nii.gz

NYU_2/sub-0025006/ses-2/mri/m0wp1sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QM/68/MD5E-s2633525--efc5d7ec57badeb1edd83b4891792ec1.nii.gz/MD5E-s2633525--efc5d7ec57badeb1edd83b4891792ec1.nii.gz

NYU_2/sub-0025006/ses-2/mri/m0wp2sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q2/Fz/MD5E-s2323913--45da3cdad8ab9dad1df94cbe78ecc9a1.nii.gz/MD5E-s2323913--45da3cdad8ab9dad1df94cbe78ecc9a1.nii.gz

NYU_2/sub-0025006/ses-2/mri/m0wp3sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mx/gW/MD5E-s2631956--0842cbdfab2ac277951c8e4aecdfa56b.nii.gz/MD5E-s2631956--0842cbdfab2ac277951c8e4aecdfa56b.nii.gz

NYU_2/sub-0025006/ses-2/mri/mori_sub-0025006_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025006/ses-2/mri/mori_sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jj/Vm/MD5E-s162816--f9fdc37508b1d5abd3b823d8abcb2822.nii.gz/MD5E-s162816--f9fdc37508b1d5abd3b823d8abcb2822.nii.gz

NYU_2/sub-0025006/ses-2/mri/mwp1sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qq/Xm/MD5E-s2634425--f73a24f683043323c4f587a05d814758.nii.gz/MD5E-s2634425--f73a24f683043323c4f587a05d814758.nii.gz

NYU_2/sub-0025006/ses-2/mri/mwp2sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vv/6Z/MD5E-s2319659--835d8be1aad2e19b22f332d5ee0c71ec.nii.gz/MD5E-s2319659--835d8be1aad2e19b22f332d5ee0c71ec.nii.gz

NYU_2/sub-0025006/ses-2/mri/mwp3sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vW/2x/MD5E-s2627968--7b3763f5d6156499ee226032829e6d45.nii.gz/MD5E-s2627968--7b3763f5d6156499ee226032829e6d45.nii.gz

NYU_2/sub-0025006/ses-2/mri/neuromorphometrics_sub-0025006_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

NYU_2/sub-0025006/ses-2/mri/neuromorphometrics_sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7F/GZ/MD5E-s192086--dc627a5b3f4e09eb0cc372fdca85caa6.nii.gz/MD5E-s192086--dc627a5b3f4e09eb0cc372fdca85caa6.nii.gz

NYU_2/sub-0025006/ses-2/mri/p0sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wW/k9/MD5E-s840978--5822678eaa4b6139ba4b13a9a01f49ed.nii.gz/MD5E-s840978--5822678eaa4b6139ba4b13a9a01f49ed.nii.gz

NYU_2/sub-0025006/ses-2/mri/p1sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K2/0z/MD5E-s847652--d81ddd4adecef565478a6fbd029f96ad.nii.gz/MD5E-s847652--d81ddd4adecef565478a6fbd029f96ad.nii.gz

NYU_2/sub-0025006/ses-2/mri/p2sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/29/pg/MD5E-s580656--6d4e29a96e8915ba8d185370f449521f.nii.gz/MD5E-s580656--6d4e29a96e8915ba8d185370f449521f.nii.gz

NYU_2/sub-0025006/ses-2/mri/p3sub-0025006_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025006/ses-2/mri/rp1sub-0025006_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/95/65/MD5E-s471695--81b677047dd9fbc09772a7bf84b37789.nii.gz/MD5E-s471695--81b677047dd9fbc09772a7bf84b37789.nii.gz

NYU_2/sub-0025006/ses-2/mri/rp2sub-0025006_ses-2_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025006/ses-2/mri/rp3sub-0025006_ses-2_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025006/ses-2/mri/t_sub-0025006_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025006/ses-2/mri/t_sub-0025006_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/XW/MD5E-s284--987e1c599733cfd161e262073d3f5f68.mat/MD5E-s284--987e1c599733cfd161e262073d3f5f68.mat

NYU_2/sub-0025006/ses-2/mri/thalamus_sub-0025006_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025006/ses-2/mri/thalamus_sub-0025006_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VZ/MQ/MD5E-s12542--b7acc492849010c3c04ed4e44ffd95a7.nii.gz/MD5E-s12542--b7acc492849010c3c04ed4e44ffd95a7.nii.gz

NYU_2/sub-0025006/ses-2/mri/wj_sub-0025006_ses-2_run-1_T1w.nii.gz

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