[DATALAD RUNCMD] Compute LMU_1/sub-0025346/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_1/sub-0025346/ses-1/anat/sub-0025346_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_1/sub-0025346/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_1/sub-0025346/ses-1/label/catROI_sub-0025346_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1g/ZP/MD5E-s61352--3a297281df01ce4c02a26f872ba0a0f3.mat/MD5E-s61352--3a297281df01ce4c02a26f872ba0a0f3.mat

LMU_1/sub-0025346/ses-1/label/catROI_sub-0025346_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mz/JF/MD5E-s188876--0fddcc85281a750dcfa6424cb9aced5f.xml/MD5E-s188876--0fddcc85281a750dcfa6424cb9aced5f.xml

LMU_1/sub-0025346/ses-1/label/catROIs_sub-0025346_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mf/2j/MD5E-s120004--eb908fdf81edaf30241358e9eeeb60c0.mat/MD5E-s120004--eb908fdf81edaf30241358e9eeeb60c0.mat

LMU_1/sub-0025346/ses-1/label/catROIs_sub-0025346_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gf/GX/MD5E-s332116--27a77ad2666c1f01cf85e3692b803a49.xml/MD5E-s332116--27a77ad2666c1f01cf85e3692b803a49.xml

LMU_1/sub-0025346/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025346_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_1/sub-0025346/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/28/8K/MD5E-s207736--9d7e28afbb77be2dd5ee7bb5717a9a15.nii.gz/MD5E-s207736--9d7e28afbb77be2dd5ee7bb5717a9a15.nii.gz

LMU_1/sub-0025346/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025346_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_1/sub-0025346/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vm/m9/MD5E-s232616--ea6c0f20ec41cb0ea762ab3b8846a7d6.nii.gz/MD5E-s232616--ea6c0f20ec41cb0ea762ab3b8846a7d6.nii.gz

LMU_1/sub-0025346/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025346_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_1/sub-0025346/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vk/2P/MD5E-s297446--69bb2865bf50d5c91e76914be50a5f75.nii.gz/MD5E-s297446--69bb2865bf50d5c91e76914be50a5f75.nii.gz

LMU_1/sub-0025346/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025346_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_1/sub-0025346/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6v/m7/MD5E-s330620--48af3a76e6d30ed413df6bd373e47423.nii.gz/MD5E-s330620--48af3a76e6d30ed413df6bd373e47423.nii.gz

LMU_1/sub-0025346/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025346_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_1/sub-0025346/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wW/Xw/MD5E-s29197--bc4c5420c0ee78c714361e5b18a4659a.nii.gz/MD5E-s29197--bc4c5420c0ee78c714361e5b18a4659a.nii.gz

LMU_1/sub-0025346/ses-1/mri/aal3_sub-0025346_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_1/sub-0025346/ses-1/mri/aal3_sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mK/X5/MD5E-s235267--d5effee6baeed76e375d6e808e07635c.nii.gz/MD5E-s235267--d5effee6baeed76e375d6e808e07635c.nii.gz

LMU_1/sub-0025346/ses-1/mri/anatomy3_sub-0025346_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_1/sub-0025346/ses-1/mri/anatomy3_sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WW/JF/MD5E-s166340--05c3524f4b215991e77b22a315ec3bee.nii.gz/MD5E-s166340--05c3524f4b215991e77b22a315ec3bee.nii.gz

LMU_1/sub-0025346/ses-1/mri/anon_misub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fQ/95/MD5E-s5364435--178f6ff1ebf57400706104f4c99badcd.nii.gz/MD5E-s5364435--178f6ff1ebf57400706104f4c99badcd.nii.gz

LMU_1/sub-0025346/ses-1/mri/anon_msub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gK/m0/MD5E-s12385744--b0cce0405c8fd9110d4ec2e0799da551.nii.gz/MD5E-s12385744--b0cce0405c8fd9110d4ec2e0799da551.nii.gz

LMU_1/sub-0025346/ses-1/mri/cat_sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v2/FQ/MD5E-s123922--a4dc592bacb1f68e6e323ff9c5fed5aa.nii.gz/MD5E-s123922--a4dc592bacb1f68e6e323ff9c5fed5aa.nii.gz

LMU_1/sub-0025346/ses-1/mri/cobra_sub-0025346_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_1/sub-0025346/ses-1/mri/cobra_sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8v/mP/MD5E-s59644--ed56a1b0c4b8e5f6cc9e504c83a646e2.nii.gz/MD5E-s59644--ed56a1b0c4b8e5f6cc9e504c83a646e2.nii.gz

LMU_1/sub-0025346/ses-1/mri/hammers_sub-0025346_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_1/sub-0025346/ses-1/mri/hammers_sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jK/zg/MD5E-s182235--0500e67071b307c8df5e7176b9fe206d.nii.gz/MD5E-s182235--0500e67071b307c8df5e7176b9fe206d.nii.gz

LMU_1/sub-0025346/ses-1/mri/ibsr_sub-0025346_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_1/sub-0025346/ses-1/mri/ibsr_sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vw/3k/MD5E-s190267--4c5f478adf9f321545992dd17f956168.nii.gz/MD5E-s190267--4c5f478adf9f321545992dd17f956168.nii.gz

LMU_1/sub-0025346/ses-1/mri/it_sub-0025346_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v8/3Z/MD5E-s283--747c40c8b16293e7ebab095701ed31cf.mat/MD5E-s283--747c40c8b16293e7ebab095701ed31cf.mat

LMU_1/sub-0025346/ses-1/mri/it_sub-0025346_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KF/G5/MD5E-s283--1ad1dc69667f195bc4116d19924ac2f6.mat/MD5E-s283--1ad1dc69667f195bc4116d19924ac2f6.mat

LMU_1/sub-0025346/ses-1/mri/iy_sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/97/58/MD5E-s56649098--431df8c593b840c56be5e76dca3c3959.nii.gz/MD5E-s56649098--431df8c593b840c56be5e76dca3c3959.nii.gz

LMU_1/sub-0025346/ses-1/mri/julichbrain_sub-0025346_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_1/sub-0025346/ses-1/mri/julichbrain_sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z4/3Z/MD5E-s246826--7b2da1cd8e3912917d4bc219f9d1690b.nii.gz/MD5E-s246826--7b2da1cd8e3912917d4bc219f9d1690b.nii.gz

LMU_1/sub-0025346/ses-1/mri/lpba40_sub-0025346_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_1/sub-0025346/ses-1/mri/lpba40_sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z8/j9/MD5E-s181516--936db36702d68a3687561a46610513e6.nii.gz/MD5E-s181516--936db36702d68a3687561a46610513e6.nii.gz

LMU_1/sub-0025346/ses-1/mri/m0wp1sub-0025346_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025346/ses-1/mri/m0wp2sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vj/vQ/MD5E-s2292719--45b3b3e26cb7b6c33f690304ecbe96f8.nii.gz/MD5E-s2292719--45b3b3e26cb7b6c33f690304ecbe96f8.nii.gz

LMU_1/sub-0025346/ses-1/mri/m0wp3sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7g/K5/MD5E-s2472224--a7819c5bcda820d47cecbe8f4bf424b5.nii.gz/MD5E-s2472224--a7819c5bcda820d47cecbe8f4bf424b5.nii.gz

LMU_1/sub-0025346/ses-1/mri/mori_sub-0025346_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_1/sub-0025346/ses-1/mri/mori_sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025346/ses-1/mri/mwp1sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F8/xZ/MD5E-s2589852--9fc8f4e07b17742137efe48ed13465ef.nii.gz/MD5E-s2589852--9fc8f4e07b17742137efe48ed13465ef.nii.gz

LMU_1/sub-0025346/ses-1/mri/mwp2sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q0/97/MD5E-s2289620--8bc9189fede5dc46ef987df90bc81130.nii.gz/MD5E-s2289620--8bc9189fede5dc46ef987df90bc81130.nii.gz

LMU_1/sub-0025346/ses-1/mri/mwp3sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025346/ses-1/mri/neuromorphometrics_sub-0025346_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_1/sub-0025346/ses-1/mri/neuromorphometrics_sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025346/ses-1/mri/p0sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/74/5p/MD5E-s771148--bb7134597919552eb3f9a1df0c2dd3dc.nii.gz/MD5E-s771148--bb7134597919552eb3f9a1df0c2dd3dc.nii.gz

LMU_1/sub-0025346/ses-1/mri/p1sub-0025346_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025346/ses-1/mri/p2sub-0025346_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025346/ses-1/mri/p3sub-0025346_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025346/ses-1/mri/rp1sub-0025346_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025346/ses-1/mri/rp2sub-0025346_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025346/ses-1/mri/rp3sub-0025346_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025346/ses-1/mri/t_sub-0025346_ses-1_run-1_T1w_affine_reorient.mat

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LMU_1/sub-0025346/ses-1/mri/t_sub-0025346_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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LMU_1/sub-0025346/ses-1/mri/thalamus_sub-0025346_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_1/sub-0025346/ses-1/mri/thalamus_sub-0025346_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025346/ses-1/mri/wj_sub-0025346_ses-1_run-1_T1w.nii.gz

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