[DATALAD RUNCMD] Compute SWU_2/sub-0027185/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_2/sub-0027185/ses-1/anat/sub-0027185_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_2/sub-0027185/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_2/sub-0027185/ses-1/label/catROI_sub-0027185_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J4/xv/MD5E-s58407--7cb44fbcf531fb2b8a73903c3688eeab.mat/MD5E-s58407--7cb44fbcf531fb2b8a73903c3688eeab.mat

SWU_2/sub-0027185/ses-1/label/catROI_sub-0027185_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vx/QW/MD5E-s189283--18c904cf925e34e5a844c005eeba79c4.xml/MD5E-s189283--18c904cf925e34e5a844c005eeba79c4.xml

SWU_2/sub-0027185/ses-1/label/catROIs_sub-0027185_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4w/xg/MD5E-s120107--161b6b57aee3b0801db8e6265308f6ac.mat/MD5E-s120107--161b6b57aee3b0801db8e6265308f6ac.mat

SWU_2/sub-0027185/ses-1/label/catROIs_sub-0027185_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8k/W0/MD5E-s332185--457dd6c9e3307b4ac3efb84e2162b62d.xml/MD5E-s332185--457dd6c9e3307b4ac3efb84e2162b62d.xml

SWU_2/sub-0027185/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_2/sub-0027185/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/39/QG/MD5E-s152396--f2cedda29d960098bcd95deb97a5d908.nii.gz/MD5E-s152396--f2cedda29d960098bcd95deb97a5d908.nii.gz

SWU_2/sub-0027185/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_2/sub-0027185/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jX/Xq/MD5E-s171854--06f86066ed3cb78767c2b3bbaa16606c.nii.gz/MD5E-s171854--06f86066ed3cb78767c2b3bbaa16606c.nii.gz

SWU_2/sub-0027185/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_2/sub-0027185/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/03/wf/MD5E-s230838--13fbd26f014cc14f2ae36ae527a89c54.nii.gz/MD5E-s230838--13fbd26f014cc14f2ae36ae527a89c54.nii.gz

SWU_2/sub-0027185/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_2/sub-0027185/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wQ/0Z/MD5E-s257621--6fb1e5136eaa589b589e19c8749d7915.nii.gz/MD5E-s257621--6fb1e5136eaa589b589e19c8749d7915.nii.gz

SWU_2/sub-0027185/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_2/sub-0027185/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z4/X1/MD5E-s24643--712425a621307eb53cfde5799212343f.nii.gz/MD5E-s24643--712425a621307eb53cfde5799212343f.nii.gz

SWU_2/sub-0027185/ses-1/mri/aal3_sub-0027185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_2/sub-0027185/ses-1/mri/aal3_sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2F/7Q/MD5E-s174232--784fc29103d9bbe7bf13d8c1096dcc65.nii.gz/MD5E-s174232--784fc29103d9bbe7bf13d8c1096dcc65.nii.gz

SWU_2/sub-0027185/ses-1/mri/anatomy3_sub-0027185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_2/sub-0027185/ses-1/mri/anatomy3_sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2v/W8/MD5E-s125724--62b584696105b19b1504e2fe1dff8b78.nii.gz/MD5E-s125724--62b584696105b19b1504e2fe1dff8b78.nii.gz

SWU_2/sub-0027185/ses-1/mri/anon_misub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MM/p6/MD5E-s10883223--e8dc10179ab9537bd656c903a2055c02.nii.gz/MD5E-s10883223--e8dc10179ab9537bd656c903a2055c02.nii.gz

SWU_2/sub-0027185/ses-1/mri/anon_msub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/jg/MD5E-s12182664--83b7c5a0bb57ddfa5ac38c79c9f72758.nii.gz/MD5E-s12182664--83b7c5a0bb57ddfa5ac38c79c9f72758.nii.gz

SWU_2/sub-0027185/ses-1/mri/cat_sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V1/k1/MD5E-s94759--55b67d2a133e6882efd2cc447fb1ec25.nii.gz/MD5E-s94759--55b67d2a133e6882efd2cc447fb1ec25.nii.gz

SWU_2/sub-0027185/ses-1/mri/cobra_sub-0027185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_2/sub-0027185/ses-1/mri/cobra_sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8g/m1/MD5E-s46044--dbc5bcf7197535738c268ffaa926500c.nii.gz/MD5E-s46044--dbc5bcf7197535738c268ffaa926500c.nii.gz

SWU_2/sub-0027185/ses-1/mri/hammers_sub-0027185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_2/sub-0027185/ses-1/mri/hammers_sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jw/8f/MD5E-s138136--fd0f29075b0b4400481e3c37266268a3.nii.gz/MD5E-s138136--fd0f29075b0b4400481e3c37266268a3.nii.gz

SWU_2/sub-0027185/ses-1/mri/ibsr_sub-0027185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_2/sub-0027185/ses-1/mri/ibsr_sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7K/7k/MD5E-s145103--b9b4ec56145ff7eef9e3a812299c965c.nii.gz/MD5E-s145103--b9b4ec56145ff7eef9e3a812299c965c.nii.gz

SWU_2/sub-0027185/ses-1/mri/it_sub-0027185_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F8/2W/MD5E-s283--48be370d38ac02333717e6be7e09bc04.mat/MD5E-s283--48be370d38ac02333717e6be7e09bc04.mat

SWU_2/sub-0027185/ses-1/mri/it_sub-0027185_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F1/qZ/MD5E-s283--915ae1ae143c8e4b2fa24a13d2903e90.mat/MD5E-s283--915ae1ae143c8e4b2fa24a13d2903e90.mat

SWU_2/sub-0027185/ses-1/mri/iy_sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GX/05/MD5E-s41191258--b81f05af238411c7548b1b17bf69263c.nii.gz/MD5E-s41191258--b81f05af238411c7548b1b17bf69263c.nii.gz

SWU_2/sub-0027185/ses-1/mri/julichbrain_sub-0027185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_2/sub-0027185/ses-1/mri/julichbrain_sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qf/qW/MD5E-s182591--7908c3244f78a5579a159669a0e84afb.nii.gz/MD5E-s182591--7908c3244f78a5579a159669a0e84afb.nii.gz

SWU_2/sub-0027185/ses-1/mri/lpba40_sub-0027185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_2/sub-0027185/ses-1/mri/lpba40_sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M1/7J/MD5E-s135771--b538a24808a0c3b80e99dd10d108fab9.nii.gz/MD5E-s135771--b538a24808a0c3b80e99dd10d108fab9.nii.gz

SWU_2/sub-0027185/ses-1/mri/m0wp1sub-0027185_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027185/ses-1/mri/m0wp2sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VJ/2z/MD5E-s2295609--004845bb478ebdce6e8a1343ab2a2042.nii.gz/MD5E-s2295609--004845bb478ebdce6e8a1343ab2a2042.nii.gz

SWU_2/sub-0027185/ses-1/mri/m0wp3sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9p/PV/MD5E-s2498920--519e822fbf0baa8c77b69fb28ca77b9e.nii.gz/MD5E-s2498920--519e822fbf0baa8c77b69fb28ca77b9e.nii.gz

SWU_2/sub-0027185/ses-1/mri/mori_sub-0027185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_2/sub-0027185/ses-1/mri/mori_sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xK/xW/MD5E-s160182--afa556ef3adbd9b6d6ec1a636cabaf47.nii.gz/MD5E-s160182--afa556ef3adbd9b6d6ec1a636cabaf47.nii.gz

SWU_2/sub-0027185/ses-1/mri/mwp1sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vp/8J/MD5E-s2594555--a7b1afaeb20c4501756646d8f29b02f5.nii.gz/MD5E-s2594555--a7b1afaeb20c4501756646d8f29b02f5.nii.gz

SWU_2/sub-0027185/ses-1/mri/mwp2sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027185/ses-1/mri/mwp3sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027185/ses-1/mri/neuromorphometrics_sub-0027185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_2/sub-0027185/ses-1/mri/neuromorphometrics_sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027185/ses-1/mri/p0sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027185/ses-1/mri/p1sub-0027185_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027185/ses-1/mri/p2sub-0027185_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027185/ses-1/mri/p3sub-0027185_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027185/ses-1/mri/rp1sub-0027185_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027185/ses-1/mri/rp2sub-0027185_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027185/ses-1/mri/rp3sub-0027185_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027185/ses-1/mri/t_sub-0027185_ses-1_run-1_T1w_affine_reorient.mat

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SWU_2/sub-0027185/ses-1/mri/t_sub-0027185_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_2/sub-0027185/ses-1/mri/thalamus_sub-0027185_ses-1_run-1_T1w.csv

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SWU_2/sub-0027185/ses-1/mri/thalamus_sub-0027185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027185/ses-1/mri/wj_sub-0027185_ses-1_run-1_T1w.nii.gz

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