[DATALAD RUNCMD] Compute IPCAS_7/sub-0026104/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_7/sub-0026104/ses-1/anat/sub-0026104_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_7/sub-0026104/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_7/sub-0026104/ses-1/label/catROI_sub-0026104_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ff/ZM/MD5E-s61278--f78399f9e4a059c54b4b1cf38167238e.mat/MD5E-s61278--f78399f9e4a059c54b4b1cf38167238e.mat

IPCAS_7/sub-0026104/ses-1/label/catROI_sub-0026104_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v0/p7/MD5E-s189157--4bf04c9faa624c76b8736d79f24d3e6e.xml/MD5E-s189157--4bf04c9faa624c76b8736d79f24d3e6e.xml

IPCAS_7/sub-0026104/ses-1/label/catROIs_sub-0026104_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zk/gV/MD5E-s120167--83946dcb7c36b58bf19f4d6e43ec1580.mat/MD5E-s120167--83946dcb7c36b58bf19f4d6e43ec1580.mat

IPCAS_7/sub-0026104/ses-1/label/catROIs_sub-0026104_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MQ/09/MD5E-s332119--39819c621bec102c7a6a40e4bbd77f61.xml/MD5E-s332119--39819c621bec102c7a6a40e4bbd77f61.xml

IPCAS_7/sub-0026104/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026104_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_7/sub-0026104/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026104_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_7/sub-0026104/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026104_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_7/sub-0026104/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026104_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xg/zf/MD5E-s165035--56897f66566f5906e7f4b7b9696f5808.nii.gz/MD5E-s165035--56897f66566f5906e7f4b7b9696f5808.nii.gz

IPCAS_7/sub-0026104/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026104_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_7/sub-0026104/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026104_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vF/4v/MD5E-s220915--ac40ff533972155763b8ca305c4ca408.nii.gz/MD5E-s220915--ac40ff533972155763b8ca305c4ca408.nii.gz

IPCAS_7/sub-0026104/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026104_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_7/sub-0026104/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026104_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_7/sub-0026104/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026104_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_7/sub-0026104/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026104_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wP/kv/MD5E-s23742--f5f9a4d9643ca153c435f1f773753bba.nii.gz/MD5E-s23742--f5f9a4d9643ca153c435f1f773753bba.nii.gz

IPCAS_7/sub-0026104/ses-1/mri/aal3_sub-0026104_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_7/sub-0026104/ses-1/mri/aal3_sub-0026104_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0X/kz/MD5E-s167976--724ae6c958efa91b7e7020002e982809.nii.gz/MD5E-s167976--724ae6c958efa91b7e7020002e982809.nii.gz

IPCAS_7/sub-0026104/ses-1/mri/anatomy3_sub-0026104_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_7/sub-0026104/ses-1/mri/anatomy3_sub-0026104_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g1/p2/MD5E-s121516--d283d54245a9aa8bb22cf1fbd72771ee.nii.gz/MD5E-s121516--d283d54245a9aa8bb22cf1fbd72771ee.nii.gz

IPCAS_7/sub-0026104/ses-1/mri/anon_misub-0026104_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9M/wx/MD5E-s4276415--ddbd8b39342b2b5a69e2922c88e979c6.nii.gz/MD5E-s4276415--ddbd8b39342b2b5a69e2922c88e979c6.nii.gz

IPCAS_7/sub-0026104/ses-1/mri/anon_msub-0026104_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9m/M8/MD5E-s10520928--5c1332e3264b35ed2106160c7f60fc64.nii.gz/MD5E-s10520928--5c1332e3264b35ed2106160c7f60fc64.nii.gz

IPCAS_7/sub-0026104/ses-1/mri/cat_sub-0026104_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_7/sub-0026104/ses-1/mri/cobra_sub-0026104_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_7/sub-0026104/ses-1/mri/cobra_sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/hammers_sub-0026104_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_7/sub-0026104/ses-1/mri/hammers_sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/ibsr_sub-0026104_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_7/sub-0026104/ses-1/mri/ibsr_sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/it_sub-0026104_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xk/fw/MD5E-s284--0a6e0310bd02dc2c65c5b724a7b175ec.mat/MD5E-s284--0a6e0310bd02dc2c65c5b724a7b175ec.mat

IPCAS_7/sub-0026104/ses-1/mri/it_sub-0026104_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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IPCAS_7/sub-0026104/ses-1/mri/iy_sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/julichbrain_sub-0026104_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026104/ses-1/mri/julichbrain_sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/lpba40_sub-0026104_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026104/ses-1/mri/lpba40_sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/m0wp1sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/m0wp2sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/m0wp3sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/mori_sub-0026104_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026104/ses-1/mri/mori_sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/mwp1sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/mwp2sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/mwp3sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/neuromorphometrics_sub-0026104_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026104/ses-1/mri/neuromorphometrics_sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/p0sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/p1sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/p2sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/p3sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/rp1sub-0026104_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/rp2sub-0026104_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/rp3sub-0026104_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/t_sub-0026104_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_7/sub-0026104/ses-1/mri/t_sub-0026104_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_7/sub-0026104/ses-1/mri/thalamus_sub-0026104_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026104/ses-1/mri/thalamus_sub-0026104_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026104/ses-1/mri/wj_sub-0026104_ses-1_run-1_T1w.nii.gz

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