[DATALAD RUNCMD] Compute SWU_4/sub-0025782/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025782/ses-1/anat/sub-0025782_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025782/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025782/ses-1/label/catROI_sub-0025782_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/66/kG/MD5E-s61377--f611dae83e016fb6d1dba40c01e25e4b.mat/MD5E-s61377--f611dae83e016fb6d1dba40c01e25e4b.mat

SWU_4/sub-0025782/ses-1/label/catROI_sub-0025782_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8x/1Q/MD5E-s188977--972eb5d56b1ce8a8af4fe909a3120e27.xml/MD5E-s188977--972eb5d56b1ce8a8af4fe909a3120e27.xml

SWU_4/sub-0025782/ses-1/label/catROIs_sub-0025782_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MV/XV/MD5E-s120055--3bb80d704346ab3977a8aaf19b4f79ef.mat/MD5E-s120055--3bb80d704346ab3977a8aaf19b4f79ef.mat

SWU_4/sub-0025782/ses-1/label/catROIs_sub-0025782_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J2/4v/MD5E-s332086--caf7b31523d2c3b2b6fca2c823e9dec2.xml/MD5E-s332086--caf7b31523d2c3b2b6fca2c823e9dec2.xml

SWU_4/sub-0025782/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025782_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025782/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2v/1J/MD5E-s175782--7fc77a1917898cfc143512b57cf17374.nii.gz/MD5E-s175782--7fc77a1917898cfc143512b57cf17374.nii.gz

SWU_4/sub-0025782/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025782_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025782/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J6/pZ/MD5E-s195983--30842a49979728de7e4128fe8ffcd2cb.nii.gz/MD5E-s195983--30842a49979728de7e4128fe8ffcd2cb.nii.gz

SWU_4/sub-0025782/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025782_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025782/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/91/KP/MD5E-s263915--53b90c6b2f3f7dea9ed6e9f141bc214d.nii.gz/MD5E-s263915--53b90c6b2f3f7dea9ed6e9f141bc214d.nii.gz

SWU_4/sub-0025782/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025782_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025782/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K5/qp/MD5E-s293026--1874d1179f2ef24b7ed9e8ea186699bf.nii.gz/MD5E-s293026--1874d1179f2ef24b7ed9e8ea186699bf.nii.gz

SWU_4/sub-0025782/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025782_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025782/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/17/10/MD5E-s26627--35c29fa9075b4f05c3e4e817f44be650.nii.gz/MD5E-s26627--35c29fa9075b4f05c3e4e817f44be650.nii.gz

SWU_4/sub-0025782/ses-1/mri/aal3_sub-0025782_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025782/ses-1/mri/aal3_sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m4/8x/MD5E-s197607--723acc635e81cf26d78e4194bfe347f4.nii.gz/MD5E-s197607--723acc635e81cf26d78e4194bfe347f4.nii.gz

SWU_4/sub-0025782/ses-1/mri/anatomy3_sub-0025782_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025782/ses-1/mri/anatomy3_sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0k/Kg/MD5E-s144477--2abf65af3aceeef082ff14eb6e142825.nii.gz/MD5E-s144477--2abf65af3aceeef082ff14eb6e142825.nii.gz

SWU_4/sub-0025782/ses-1/mri/anon_misub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x6/7p/MD5E-s9805161--e17fe113831ed1f79d101945edf588c1.nii.gz/MD5E-s9805161--e17fe113831ed1f79d101945edf588c1.nii.gz

SWU_4/sub-0025782/ses-1/mri/anon_msub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0j/m5/MD5E-s11359112--b66485f836d7be064df30996ac870583.nii.gz/MD5E-s11359112--b66485f836d7be064df30996ac870583.nii.gz

SWU_4/sub-0025782/ses-1/mri/cat_sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kM/kV/MD5E-s104756--5b5a777ef64a68077ea99f532ad8441a.nii.gz/MD5E-s104756--5b5a777ef64a68077ea99f532ad8441a.nii.gz

SWU_4/sub-0025782/ses-1/mri/cobra_sub-0025782_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025782/ses-1/mri/cobra_sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vK/K6/MD5E-s51255--76ea51c7c0843b733435738082868278.nii.gz/MD5E-s51255--76ea51c7c0843b733435738082868278.nii.gz

SWU_4/sub-0025782/ses-1/mri/hammers_sub-0025782_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025782/ses-1/mri/hammers_sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PG/20/MD5E-s156999--008c4c589bc85fbcd9ba64282fcc744c.nii.gz/MD5E-s156999--008c4c589bc85fbcd9ba64282fcc744c.nii.gz

SWU_4/sub-0025782/ses-1/mri/ibsr_sub-0025782_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025782/ses-1/mri/ibsr_sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4Z/VW/MD5E-s163609--6e5375709c6bbce288cac4b948e41add.nii.gz/MD5E-s163609--6e5375709c6bbce288cac4b948e41add.nii.gz

SWU_4/sub-0025782/ses-1/mri/it_sub-0025782_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XV/xg/MD5E-s283--927c56aee9bc2009fd2990a7894880bd.mat/MD5E-s283--927c56aee9bc2009fd2990a7894880bd.mat

SWU_4/sub-0025782/ses-1/mri/it_sub-0025782_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w2/83/MD5E-s284--134d9d22af8789d4ec1fdf05ec58b6c3.mat/MD5E-s284--134d9d22af8789d4ec1fdf05ec58b6c3.mat

SWU_4/sub-0025782/ses-1/mri/iy_sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gV/P5/MD5E-s50530480--fa848e8f786b15c8e692af101959b7bb.nii.gz/MD5E-s50530480--fa848e8f786b15c8e692af101959b7bb.nii.gz

SWU_4/sub-0025782/ses-1/mri/julichbrain_sub-0025782_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025782/ses-1/mri/julichbrain_sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K9/0P/MD5E-s210929--fb041b355077c548ab17d1dbd5156848.nii.gz/MD5E-s210929--fb041b355077c548ab17d1dbd5156848.nii.gz

SWU_4/sub-0025782/ses-1/mri/lpba40_sub-0025782_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025782/ses-1/mri/lpba40_sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xQ/Wf/MD5E-s151718--6fa708539b5913ea816e4b9d3df8b2a1.nii.gz/MD5E-s151718--6fa708539b5913ea816e4b9d3df8b2a1.nii.gz

SWU_4/sub-0025782/ses-1/mri/m0wp1sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q3/Kf/MD5E-s2580438--da6cd75a4023a1db4f3631b1da52358e.nii.gz/MD5E-s2580438--da6cd75a4023a1db4f3631b1da52358e.nii.gz

SWU_4/sub-0025782/ses-1/mri/m0wp2sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V0/xm/MD5E-s2322847--8806997783d7236b8764021a88a818af.nii.gz/MD5E-s2322847--8806997783d7236b8764021a88a818af.nii.gz

SWU_4/sub-0025782/ses-1/mri/m0wp3sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j4/0j/MD5E-s2533193--c87b02cad96bb308b5584fcc6c710cb0.nii.gz/MD5E-s2533193--c87b02cad96bb308b5584fcc6c710cb0.nii.gz

SWU_4/sub-0025782/ses-1/mri/mori_sub-0025782_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025782/ses-1/mri/mori_sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FZ/8M/MD5E-s183880--fe182278dc1ef4f525bcf1d5226bdb8b.nii.gz/MD5E-s183880--fe182278dc1ef4f525bcf1d5226bdb8b.nii.gz

SWU_4/sub-0025782/ses-1/mri/mwp1sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7x/wJ/MD5E-s2583083--a2ff75901b14f66ec524ba8636b6d4e8.nii.gz/MD5E-s2583083--a2ff75901b14f66ec524ba8636b6d4e8.nii.gz

SWU_4/sub-0025782/ses-1/mri/mwp2sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z3/2W/MD5E-s2319554--32f1ef6a1fff7b154a96ff0092c0330c.nii.gz/MD5E-s2319554--32f1ef6a1fff7b154a96ff0092c0330c.nii.gz

SWU_4/sub-0025782/ses-1/mri/mwp3sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wf/z3/MD5E-s2532145--4fd9f370743edb84ac86d03255bf5759.nii.gz/MD5E-s2532145--4fd9f370743edb84ac86d03255bf5759.nii.gz

SWU_4/sub-0025782/ses-1/mri/neuromorphometrics_sub-0025782_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025782/ses-1/mri/neuromorphometrics_sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025782/ses-1/mri/p0sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jw/59/MD5E-s691400--78e0c894ed6ea4343bff23e3c64d59f4.nii.gz/MD5E-s691400--78e0c894ed6ea4343bff23e3c64d59f4.nii.gz

SWU_4/sub-0025782/ses-1/mri/p1sub-0025782_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025782/ses-1/mri/p2sub-0025782_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025782/ses-1/mri/p3sub-0025782_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025782/ses-1/mri/rp1sub-0025782_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025782/ses-1/mri/rp2sub-0025782_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025782/ses-1/mri/rp3sub-0025782_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025782/ses-1/mri/t_sub-0025782_ses-1_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025782/ses-1/mri/t_sub-0025782_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025782/ses-1/mri/thalamus_sub-0025782_ses-1_run-1_T1w.csv

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SWU_4/sub-0025782/ses-1/mri/thalamus_sub-0025782_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025782/ses-1/mri/wj_sub-0025782_ses-1_run-1_T1w.nii.gz

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