[DATALAD RUNCMD] Compute NYU_2/sub-0025003/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025003/ses-1/anat/sub-0025003_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025003/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025003/ses-1/label/catROI_sub-0025003_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/QX/pk/MD5E-s57862--23c86913d0a7b6389f7ee47497ddef13.mat/MD5E-s57862--23c86913d0a7b6389f7ee47497ddef13.mat

NYU_2/sub-0025003/ses-1/label/catROI_sub-0025003_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5Q/32/MD5E-s189078--8808f15ff49626c36a1bf859f6845682.xml/MD5E-s189078--8808f15ff49626c36a1bf859f6845682.xml

NYU_2/sub-0025003/ses-1/label/catROI_sub-0025003_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fp/7w/MD5E-s57868--f292d9f4df873fe8a9bba6132816e4c9.mat/MD5E-s57868--f292d9f4df873fe8a9bba6132816e4c9.mat

NYU_2/sub-0025003/ses-1/label/catROI_sub-0025003_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kz/Fv/MD5E-s189155--76899fb864946c47da005b7be373a1f0.xml/MD5E-s189155--76899fb864946c47da005b7be373a1f0.xml

NYU_2/sub-0025003/ses-1/label/catROIs_sub-0025003_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gQ/5g/MD5E-s120351--a824fd94fa41f038341616b0d7fe7489.mat/MD5E-s120351--a824fd94fa41f038341616b0d7fe7489.mat

NYU_2/sub-0025003/ses-1/label/catROIs_sub-0025003_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5p/zJ/MD5E-s332130--49de6e4cf0e94e3b683c3dad9c89440a.xml/MD5E-s332130--49de6e4cf0e94e3b683c3dad9c89440a.xml

NYU_2/sub-0025003/ses-1/label/catROIs_sub-0025003_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gj/ww/MD5E-s120306--058f06c107b595cc729bb23afc5775fb.mat/MD5E-s120306--058f06c107b595cc729bb23afc5775fb.mat

NYU_2/sub-0025003/ses-1/label/catROIs_sub-0025003_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6K/Pq/MD5E-s332167--85422026b9384636c3acaa8ffba61169.xml/MD5E-s332167--85422026b9384636c3acaa8ffba61169.xml

NYU_2/sub-0025003/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/x9/XZ/MD5E-s141059--da881a3db0fe245a538dcad574e434c1.nii.gz/MD5E-s141059--da881a3db0fe245a538dcad574e434c1.nii.gz

NYU_2/sub-0025003/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025003_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pw/j3/MD5E-s141381--eaba64769c7ddb83a868b7ecf434ce84.nii.gz/MD5E-s141381--eaba64769c7ddb83a868b7ecf434ce84.nii.gz

NYU_2/sub-0025003/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/wQ/Pf/MD5E-s157659--8b0796642ccb3e0d920ff75b807e4d11.nii.gz/MD5E-s157659--8b0796642ccb3e0d920ff75b807e4d11.nii.gz

NYU_2/sub-0025003/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025003_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mW/59/MD5E-s158622--e1c43f5ca8b82313899688bc2543d2e4.nii.gz/MD5E-s158622--e1c43f5ca8b82313899688bc2543d2e4.nii.gz

NYU_2/sub-0025003/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/7K/Wk/MD5E-s211731--1e6c2de91c6d5a0580d4aee73c81a923.nii.gz/MD5E-s211731--1e6c2de91c6d5a0580d4aee73c81a923.nii.gz

NYU_2/sub-0025003/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025003_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/60/v7/MD5E-s213179--f14c10631f288475edb1b9cad1eb18ac.nii.gz/MD5E-s213179--f14c10631f288475edb1b9cad1eb18ac.nii.gz

NYU_2/sub-0025003/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/wF/g5/MD5E-s234915--46845b63b244862ecb45c615039e44d5.nii.gz/MD5E-s234915--46845b63b244862ecb45c615039e44d5.nii.gz

NYU_2/sub-0025003/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025003_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3X/kZ/MD5E-s236021--edaf61dfe5ecf2e5faf74455a8dd4c2e.nii.gz/MD5E-s236021--edaf61dfe5ecf2e5faf74455a8dd4c2e.nii.gz

NYU_2/sub-0025003/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/33/Zz/MD5E-s19191--8d36a0d95e59c08fb5d7ca12fa9360e2.nii.gz/MD5E-s19191--8d36a0d95e59c08fb5d7ca12fa9360e2.nii.gz

NYU_2/sub-0025003/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025003_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8K/1m/MD5E-s19193--d3bb07a5fa326096d6208fd40c6f5cda.nii.gz/MD5E-s19193--d3bb07a5fa326096d6208fd40c6f5cda.nii.gz

NYU_2/sub-0025003/ses-1/mri/aal3_sub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/P3/mZ/MD5E-s158793--7d4e17ab0e2856129bc338e7a8ba72f8.nii.gz/MD5E-s158793--7d4e17ab0e2856129bc338e7a8ba72f8.nii.gz

NYU_2/sub-0025003/ses-1/mri/aal3_sub-0025003_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pz/vQ/MD5E-s160077--a874c1f66a38488153f8201845c9d171.nii.gz/MD5E-s160077--a874c1f66a38488153f8201845c9d171.nii.gz

NYU_2/sub-0025003/ses-1/mri/anatomy3_sub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/v3/gJ/MD5E-s111662--834bd1c635c6ae6a71756f18e4f9b7e1.nii.gz/MD5E-s111662--834bd1c635c6ae6a71756f18e4f9b7e1.nii.gz

NYU_2/sub-0025003/ses-1/mri/anatomy3_sub-0025003_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3z/wk/MD5E-s111263--2b587dd946b5bb0e7712dad9c33a849c.nii.gz/MD5E-s111263--2b587dd946b5bb0e7712dad9c33a849c.nii.gz

NYU_2/sub-0025003/ses-1/mri/anon_misub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2K/k5/MD5E-s3793148--29e03b6387bc08ec88023727753295b8.nii.gz/MD5E-s3793148--29e03b6387bc08ec88023727753295b8.nii.gz

NYU_2/sub-0025003/ses-1/mri/anon_misub-0025003_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5m/kQ/MD5E-s3582474--0ffa18ba6fc3978596e5802136b8c0e4.nii.gz/MD5E-s3582474--0ffa18ba6fc3978596e5802136b8c0e4.nii.gz

NYU_2/sub-0025003/ses-1/mri/anon_msub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Z7/Vk/MD5E-s7782102--288e5bef7ceb78972f45a70f49b90177.nii.gz/MD5E-s7782102--288e5bef7ceb78972f45a70f49b90177.nii.gz

NYU_2/sub-0025003/ses-1/mri/anon_msub-0025003_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4m/Qv/MD5E-s7352248--be07dcc4ac179d436ec845e86b27fe5c.nii.gz/MD5E-s7352248--be07dcc4ac179d436ec845e86b27fe5c.nii.gz

NYU_2/sub-0025003/ses-1/mri/cat_sub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fJ/6F/MD5E-s82374--b5e2ef9b24ce50fa8dfc3b0ac55405f1.nii.gz/MD5E-s82374--b5e2ef9b24ce50fa8dfc3b0ac55405f1.nii.gz

NYU_2/sub-0025003/ses-1/mri/cat_sub-0025003_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8g/k5/MD5E-s83200--2b691150b8d099c8048cee7eb1e1a250.nii.gz/MD5E-s83200--2b691150b8d099c8048cee7eb1e1a250.nii.gz

NYU_2/sub-0025003/ses-1/mri/cobra_sub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fV/qx/MD5E-s37403--b4ff952871f2193ba424afd51998d26d.nii.gz/MD5E-s37403--b4ff952871f2193ba424afd51998d26d.nii.gz

NYU_2/sub-0025003/ses-1/mri/cobra_sub-0025003_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7k/4g/MD5E-s37607--c9e8493046cc5e7ae9c103826bfe9520.nii.gz/MD5E-s37607--c9e8493046cc5e7ae9c103826bfe9520.nii.gz

NYU_2/sub-0025003/ses-1/mri/hammers_sub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/ZF/4x/MD5E-s122250--e11bfb9579461612c0ba5cec3b5a8fbd.nii.gz/MD5E-s122250--e11bfb9579461612c0ba5cec3b5a8fbd.nii.gz

NYU_2/sub-0025003/ses-1/mri/hammers_sub-0025003_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gv/J9/MD5E-s121865--82e4171b81d78ed204d5e4aab912bb8e.nii.gz/MD5E-s121865--82e4171b81d78ed204d5e4aab912bb8e.nii.gz

NYU_2/sub-0025003/ses-1/mri/ibsr_sub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Gv/xj/MD5E-s128895--6dce4338bc756a2060165ecc470bcd30.nii.gz/MD5E-s128895--6dce4338bc756a2060165ecc470bcd30.nii.gz

NYU_2/sub-0025003/ses-1/mri/ibsr_sub-0025003_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3V/Z6/MD5E-s129032--e87a8b12ba75803d9b2043df93f1543e.nii.gz/MD5E-s129032--e87a8b12ba75803d9b2043df93f1543e.nii.gz

NYU_2/sub-0025003/ses-1/mri/it_sub-0025003_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/7j/X3/MD5E-s285--dc5197baad71fec189ad480ebb875972.mat/MD5E-s285--dc5197baad71fec189ad480ebb875972.mat

NYU_2/sub-0025003/ses-1/mri/it_sub-0025003_ses-1_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/G3/pP/MD5E-s284--e4904f266d0659bdc05e310ea2520d6f.mat/MD5E-s284--e4904f266d0659bdc05e310ea2520d6f.mat

NYU_2/sub-0025003/ses-1/mri/it_sub-0025003_ses-1_run-2_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qv/wk/MD5E-s284--73dec67b23902478a2cdcbefc2f78f8d.mat/MD5E-s284--73dec67b23902478a2cdcbefc2f78f8d.mat

NYU_2/sub-0025003/ses-1/mri/it_sub-0025003_ses-1_run-2_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/95/6X/MD5E-s283--a72c5339dfe1b6fd6189d90e361e03c0.mat/MD5E-s283--a72c5339dfe1b6fd6189d90e361e03c0.mat

NYU_2/sub-0025003/ses-1/mri/iy_sub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/xz/qK/MD5E-s31581165--f76f6a6667a09664bf2cf17b15b8319d.nii.gz/MD5E-s31581165--f76f6a6667a09664bf2cf17b15b8319d.nii.gz

NYU_2/sub-0025003/ses-1/mri/iy_sub-0025003_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025003/ses-1/mri/julichbrain_sub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/VZ/j4/MD5E-s166156--d6364968bbbfb9fa713180f037dd9151.nii.gz/MD5E-s166156--d6364968bbbfb9fa713180f037dd9151.nii.gz

NYU_2/sub-0025003/ses-1/mri/julichbrain_sub-0025003_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025003/ses-1/mri/lpba40_sub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025003/ses-1/mri/lpba40_sub-0025003_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025003/ses-1/mri/m0wp1sub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025003/ses-1/mri/m0wp1sub-0025003_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025003/ses-1/mri/m0wp2sub-0025003_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025003/ses-1/mri/m0wp2sub-0025003_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025003/ses-1/mri/m0wp3sub-0025003_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025003/ses-1/mri/m0wp3sub-0025003_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025003/ses-1/mri/mori_sub-0025003_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025003/ses-1/mri/mori_sub-0025003_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025003/ses-1/mri/mwp1sub-0025003_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025003/ses-1/mri/mwp1sub-0025003_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025003/ses-1/mri/mwp2sub-0025003_ses-1_run-1_T1w.nii.gz

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