[DATALAD RUNCMD] Compute BNU_1/sub-0025886/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025886/ses-1/anat/sub-0025886_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025886/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025886/ses-1/label/catROI_sub-0025886_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2q/w3/MD5E-s61217--00692582db926c2471cbe7cffbdbeb1c.mat/MD5E-s61217--00692582db926c2471cbe7cffbdbeb1c.mat

BNU_1/sub-0025886/ses-1/label/catROI_sub-0025886_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x1/Fp/MD5E-s188733--dda770f4d3b87f822627bef21f066fdc.xml/MD5E-s188733--dda770f4d3b87f822627bef21f066fdc.xml

BNU_1/sub-0025886/ses-1/label/catROIs_sub-0025886_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p6/Mk/MD5E-s120011--618e35a7d4cca7543b418e393d3622e9.mat/MD5E-s120011--618e35a7d4cca7543b418e393d3622e9.mat

BNU_1/sub-0025886/ses-1/label/catROIs_sub-0025886_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1X/Xg/MD5E-s332079--5d4f27c5ac1ffcbea736e1c4ffba1aef.xml/MD5E-s332079--5d4f27c5ac1ffcbea736e1c4ffba1aef.xml

BNU_1/sub-0025886/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025886_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025886/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/77/vm/MD5E-s142196--e853a7b025589ca312c406b239204d38.nii.gz/MD5E-s142196--e853a7b025589ca312c406b239204d38.nii.gz

BNU_1/sub-0025886/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025886_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025886/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mj/wx/MD5E-s160792--0179ce6cc819206dbafb25548917b47d.nii.gz/MD5E-s160792--0179ce6cc819206dbafb25548917b47d.nii.gz

BNU_1/sub-0025886/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025886_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025886/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xz/00/MD5E-s216441--74382024cd6eb87aea872217ec1dfc2d.nii.gz/MD5E-s216441--74382024cd6eb87aea872217ec1dfc2d.nii.gz

BNU_1/sub-0025886/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025886_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025886/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5x/1z/MD5E-s240727--eb7ae2ecbbf8cc70c76e07d78e9f3a78.nii.gz/MD5E-s240727--eb7ae2ecbbf8cc70c76e07d78e9f3a78.nii.gz

BNU_1/sub-0025886/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025886_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025886/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/72/4z/MD5E-s20347--ed1232f7b9072f31b4ca0f1b7dad7c75.nii.gz/MD5E-s20347--ed1232f7b9072f31b4ca0f1b7dad7c75.nii.gz

BNU_1/sub-0025886/ses-1/mri/aal3_sub-0025886_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025886/ses-1/mri/aal3_sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2P/jQ/MD5E-s163013--f21f95b0cfa5d3259ba622c79876d1a5.nii.gz/MD5E-s163013--f21f95b0cfa5d3259ba622c79876d1a5.nii.gz

BNU_1/sub-0025886/ses-1/mri/anatomy3_sub-0025886_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025886/ses-1/mri/anatomy3_sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MG/qZ/MD5E-s116315--276b5deeb27fb04d121adb68d36c2c96.nii.gz/MD5E-s116315--276b5deeb27fb04d121adb68d36c2c96.nii.gz

BNU_1/sub-0025886/ses-1/mri/anon_misub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/97/5M/MD5E-s3922913--d886f0de06283ae32b29f873e81ee20b.nii.gz/MD5E-s3922913--d886f0de06283ae32b29f873e81ee20b.nii.gz

BNU_1/sub-0025886/ses-1/mri/anon_msub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/1Q/MD5E-s9978071--90a2746f547217e37ebf66398936be65.nii.gz/MD5E-s9978071--90a2746f547217e37ebf66398936be65.nii.gz

BNU_1/sub-0025886/ses-1/mri/cat_sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JZ/P5/MD5E-s86677--9a948a6e06ae99e766a9f5d3ad3fc37b.nii.gz/MD5E-s86677--9a948a6e06ae99e766a9f5d3ad3fc37b.nii.gz

BNU_1/sub-0025886/ses-1/mri/cobra_sub-0025886_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025886/ses-1/mri/cobra_sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gG/Jv/MD5E-s42391--7e64962a418ec126ab00e2a498246d11.nii.gz/MD5E-s42391--7e64962a418ec126ab00e2a498246d11.nii.gz

BNU_1/sub-0025886/ses-1/mri/hammers_sub-0025886_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025886/ses-1/mri/hammers_sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PG/4V/MD5E-s130104--76e26d07d66451b5bb823c3d9f916c96.nii.gz/MD5E-s130104--76e26d07d66451b5bb823c3d9f916c96.nii.gz

BNU_1/sub-0025886/ses-1/mri/ibsr_sub-0025886_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025886/ses-1/mri/ibsr_sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jJ/wp/MD5E-s136677--a771197e088ba67eabb396fda37bb4ab.nii.gz/MD5E-s136677--a771197e088ba67eabb396fda37bb4ab.nii.gz

BNU_1/sub-0025886/ses-1/mri/it_sub-0025886_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FG/V6/MD5E-s284--c1fd418a6043c29160f6bb3c184e391d.mat/MD5E-s284--c1fd418a6043c29160f6bb3c184e391d.mat

BNU_1/sub-0025886/ses-1/mri/it_sub-0025886_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2J/q2/MD5E-s284--b0a71d193c1a39a1d066d28265d05b7d.mat/MD5E-s284--b0a71d193c1a39a1d066d28265d05b7d.mat

BNU_1/sub-0025886/ses-1/mri/iy_sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/34/pZ/MD5E-s33572902--032efcf5e2fdf05d730201c801f9fbce.nii.gz/MD5E-s33572902--032efcf5e2fdf05d730201c801f9fbce.nii.gz

BNU_1/sub-0025886/ses-1/mri/julichbrain_sub-0025886_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025886/ses-1/mri/julichbrain_sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X3/x3/MD5E-s173418--1f2b4940127eff9d2793cf18f2b0b40d.nii.gz/MD5E-s173418--1f2b4940127eff9d2793cf18f2b0b40d.nii.gz

BNU_1/sub-0025886/ses-1/mri/lpba40_sub-0025886_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025886/ses-1/mri/lpba40_sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fF/7Q/MD5E-s127632--451ceb1be2f67904aa2e0d2725307179.nii.gz/MD5E-s127632--451ceb1be2f67904aa2e0d2725307179.nii.gz

BNU_1/sub-0025886/ses-1/mri/m0wp1sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7P/1G/MD5E-s2583612--480fc4836586a3e2f25d5a3e649411a7.nii.gz/MD5E-s2583612--480fc4836586a3e2f25d5a3e649411a7.nii.gz

BNU_1/sub-0025886/ses-1/mri/m0wp2sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/70/1Z/MD5E-s2276983--52bc89d3af73e419daf0e6d8a8fdc4cf.nii.gz/MD5E-s2276983--52bc89d3af73e419daf0e6d8a8fdc4cf.nii.gz

BNU_1/sub-0025886/ses-1/mri/m0wp3sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qg/8P/MD5E-s2406737--a443f8b8019318e6f55f9c63b7bacb80.nii.gz/MD5E-s2406737--a443f8b8019318e6f55f9c63b7bacb80.nii.gz

BNU_1/sub-0025886/ses-1/mri/mori_sub-0025886_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025886/ses-1/mri/mori_sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7K/7j/MD5E-s149655--979433d8772612d6ba0eeda604e3d455.nii.gz/MD5E-s149655--979433d8772612d6ba0eeda604e3d455.nii.gz

BNU_1/sub-0025886/ses-1/mri/mwp1sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8z/7X/MD5E-s2588274--c1d1e5fced77dc170f29ebad053484d7.nii.gz/MD5E-s2588274--c1d1e5fced77dc170f29ebad053484d7.nii.gz

BNU_1/sub-0025886/ses-1/mri/mwp2sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/34/49/MD5E-s2271420--ae159df6db6fc27dcebfa55f4b6bc93a.nii.gz/MD5E-s2271420--ae159df6db6fc27dcebfa55f4b6bc93a.nii.gz

BNU_1/sub-0025886/ses-1/mri/mwp3sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F4/w3/MD5E-s2405071--133eff05f7a02736b6c62b4e2aa6e794.nii.gz/MD5E-s2405071--133eff05f7a02736b6c62b4e2aa6e794.nii.gz

BNU_1/sub-0025886/ses-1/mri/neuromorphometrics_sub-0025886_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025886/ses-1/mri/neuromorphometrics_sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x4/F9/MD5E-s176965--b26c960a6e8733ef2f46cfc7ff99e7e0.nii.gz/MD5E-s176965--b26c960a6e8733ef2f46cfc7ff99e7e0.nii.gz

BNU_1/sub-0025886/ses-1/mri/p0sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3f/pW/MD5E-s715218--866fad83730ab9107d71d98b6f592bea.nii.gz/MD5E-s715218--866fad83730ab9107d71d98b6f592bea.nii.gz

BNU_1/sub-0025886/ses-1/mri/p1sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q8/3x/MD5E-s733883--79c569391d756ee78552b4f62e5f6c69.nii.gz/MD5E-s733883--79c569391d756ee78552b4f62e5f6c69.nii.gz

BNU_1/sub-0025886/ses-1/mri/p2sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wZ/2K/MD5E-s507829--cc724050abca1d0ed30c840d4d97f007.nii.gz/MD5E-s507829--cc724050abca1d0ed30c840d4d97f007.nii.gz

BNU_1/sub-0025886/ses-1/mri/p3sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025886/ses-1/mri/rp1sub-0025886_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p1/9p/MD5E-s439918--5b505cd7e74a44d1aa7ac477eac02580.nii.gz/MD5E-s439918--5b505cd7e74a44d1aa7ac477eac02580.nii.gz

BNU_1/sub-0025886/ses-1/mri/rp2sub-0025886_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025886/ses-1/mri/rp3sub-0025886_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025886/ses-1/mri/t_sub-0025886_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vz/9k/MD5E-s284--db8b6137448d90963fa810f15a865404.mat/MD5E-s284--db8b6137448d90963fa810f15a865404.mat

BNU_1/sub-0025886/ses-1/mri/t_sub-0025886_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p0/1J/MD5E-s284--6772b5b6f15f39daea7e2ae254cddfee.mat/MD5E-s284--6772b5b6f15f39daea7e2ae254cddfee.mat

BNU_1/sub-0025886/ses-1/mri/thalamus_sub-0025886_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025886/ses-1/mri/thalamus_sub-0025886_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0q/jQ/MD5E-s13545--6202ea6f5bce4e1a696e0b1090906f08.nii.gz/MD5E-s13545--6202ea6f5bce4e1a696e0b1090906f08.nii.gz

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