[DATALAD RUNCMD] Compute HNU_1/sub-0025443/ses-7

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/HNU_1/sub-0025443/ses-7/anat/sub-0025443_ses-7_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "HNU_1/sub-0025443/ses-7"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

HNU_1/sub-0025443/ses-7/label/catROI_sub-0025443_ses-7_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fp/2p/MD5E-s61406--09bcfc28c031783163966c9ef97625fd.mat/MD5E-s61406--09bcfc28c031783163966c9ef97625fd.mat

HNU_1/sub-0025443/ses-7/label/catROI_sub-0025443_ses-7_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GJ/g0/MD5E-s188763--0d90397db83fa0f1972616ad3914566a.xml/MD5E-s188763--0d90397db83fa0f1972616ad3914566a.xml

HNU_1/sub-0025443/ses-7/label/catROIs_sub-0025443_ses-7_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZK/vv/MD5E-s120048--798788d39c8dfb6bf7ed7e4c7948a614.mat/MD5E-s120048--798788d39c8dfb6bf7ed7e4c7948a614.mat

HNU_1/sub-0025443/ses-7/label/catROIs_sub-0025443_ses-7_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KF/wZ/MD5E-s332107--cee2113355f5288606424ab339dd18b9.xml/MD5E-s332107--cee2113355f5288606424ab339dd18b9.xml

HNU_1/sub-0025443/ses-7/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025443_ses-7_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

HNU_1/sub-0025443/ses-7/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mW/KX/MD5E-s198580--f7ddb59073394dc20d07479c36e7e305.nii.gz/MD5E-s198580--f7ddb59073394dc20d07479c36e7e305.nii.gz

HNU_1/sub-0025443/ses-7/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025443_ses-7_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

HNU_1/sub-0025443/ses-7/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2z/wK/MD5E-s225605--57fa53ed5a9a43f8bc5e3611cdb78a35.nii.gz/MD5E-s225605--57fa53ed5a9a43f8bc5e3611cdb78a35.nii.gz

HNU_1/sub-0025443/ses-7/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025443_ses-7_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

HNU_1/sub-0025443/ses-7/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VM/4j/MD5E-s301968--74cbbaaaf37b6f62cf35cb0aa0f6a733.nii.gz/MD5E-s301968--74cbbaaaf37b6f62cf35cb0aa0f6a733.nii.gz

HNU_1/sub-0025443/ses-7/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025443_ses-7_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

HNU_1/sub-0025443/ses-7/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8X/Wz/MD5E-s334679--772bf8797de637d140f76e75ef64dece.nii.gz/MD5E-s334679--772bf8797de637d140f76e75ef64dece.nii.gz

HNU_1/sub-0025443/ses-7/mri/Tian_Subcortex_S2_7T_sub-0025443_ses-7_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

HNU_1/sub-0025443/ses-7/mri/Tian_Subcortex_S2_7T_sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5f/XF/MD5E-s27153--94cbefe4de36df84c278a24cd8b8ccdf.nii.gz/MD5E-s27153--94cbefe4de36df84c278a24cd8b8ccdf.nii.gz

HNU_1/sub-0025443/ses-7/mri/aal3_sub-0025443_ses-7_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

HNU_1/sub-0025443/ses-7/mri/aal3_sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6K/w1/MD5E-s227140--d03545f60ee03aa5403543b87c295084.nii.gz/MD5E-s227140--d03545f60ee03aa5403543b87c295084.nii.gz

HNU_1/sub-0025443/ses-7/mri/anatomy3_sub-0025443_ses-7_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

HNU_1/sub-0025443/ses-7/mri/anatomy3_sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qm/9g/MD5E-s164313--a2a67cb8605ff38a73575cebebf947bb.nii.gz/MD5E-s164313--a2a67cb8605ff38a73575cebebf947bb.nii.gz

HNU_1/sub-0025443/ses-7/mri/anon_misub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0P/88/MD5E-s6122153--ae42c940dec5bab4209ac279188d23fe.nii.gz/MD5E-s6122153--ae42c940dec5bab4209ac279188d23fe.nii.gz

HNU_1/sub-0025443/ses-7/mri/anon_msub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q5/f9/MD5E-s11670640--860c4919f591b7b30e3da534e34abb7e.nii.gz/MD5E-s11670640--860c4919f591b7b30e3da534e34abb7e.nii.gz

HNU_1/sub-0025443/ses-7/mri/cat_sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xz/mg/MD5E-s124163--14d6f8580d29ce115b8b001f583d6178.nii.gz/MD5E-s124163--14d6f8580d29ce115b8b001f583d6178.nii.gz

HNU_1/sub-0025443/ses-7/mri/cobra_sub-0025443_ses-7_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

HNU_1/sub-0025443/ses-7/mri/cobra_sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JM/M8/MD5E-s57012--0d22f59ef2659dc8004b90c2f9359e90.nii.gz/MD5E-s57012--0d22f59ef2659dc8004b90c2f9359e90.nii.gz

HNU_1/sub-0025443/ses-7/mri/hammers_sub-0025443_ses-7_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

HNU_1/sub-0025443/ses-7/mri/hammers_sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3f/G6/MD5E-s180831--b93b4d5f7bc8ca4d80bebb9f2d4d7fe3.nii.gz/MD5E-s180831--b93b4d5f7bc8ca4d80bebb9f2d4d7fe3.nii.gz

HNU_1/sub-0025443/ses-7/mri/ibsr_sub-0025443_ses-7_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

HNU_1/sub-0025443/ses-7/mri/ibsr_sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JP/f3/MD5E-s187392--5deaa933088e7ba81306f2e955a4be18.nii.gz/MD5E-s187392--5deaa933088e7ba81306f2e955a4be18.nii.gz

HNU_1/sub-0025443/ses-7/mri/it_sub-0025443_ses-7_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W1/pk/MD5E-s283--b19614c9f4e2feee8c96c75a08640957.mat/MD5E-s283--b19614c9f4e2feee8c96c75a08640957.mat

HNU_1/sub-0025443/ses-7/mri/it_sub-0025443_ses-7_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q5/f8/MD5E-s283--f3794cd56ff126d9932fe75e107ea720.mat/MD5E-s283--f3794cd56ff126d9932fe75e107ea720.mat

HNU_1/sub-0025443/ses-7/mri/iy_sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/58/km/MD5E-s57085653--b2c8366a5a5aef07604ffd2945ca80e1.nii.gz/MD5E-s57085653--b2c8366a5a5aef07604ffd2945ca80e1.nii.gz

HNU_1/sub-0025443/ses-7/mri/julichbrain_sub-0025443_ses-7_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

HNU_1/sub-0025443/ses-7/mri/julichbrain_sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/07/4j/MD5E-s240546--5d21b9ed93323874230223215dbc7aac.nii.gz/MD5E-s240546--5d21b9ed93323874230223215dbc7aac.nii.gz

HNU_1/sub-0025443/ses-7/mri/lpba40_sub-0025443_ses-7_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

HNU_1/sub-0025443/ses-7/mri/lpba40_sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JJ/m5/MD5E-s174503--0295921ecd8a890d263990299b4ca336.nii.gz/MD5E-s174503--0295921ecd8a890d263990299b4ca336.nii.gz

HNU_1/sub-0025443/ses-7/mri/m0wp1sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8w/27/MD5E-s2602076--7e57c454adf84e45943c0daef46cac6a.nii.gz/MD5E-s2602076--7e57c454adf84e45943c0daef46cac6a.nii.gz

HNU_1/sub-0025443/ses-7/mri/m0wp2sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZZ/XX/MD5E-s2405185--27c5b145a6b61ff791855adca48175a6.nii.gz/MD5E-s2405185--27c5b145a6b61ff791855adca48175a6.nii.gz

HNU_1/sub-0025443/ses-7/mri/m0wp3sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qk/p9/MD5E-s2624561--1e2cf4f607814601a9da84a99cb860c3.nii.gz/MD5E-s2624561--1e2cf4f607814601a9da84a99cb860c3.nii.gz

HNU_1/sub-0025443/ses-7/mri/mori_sub-0025443_ses-7_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

HNU_1/sub-0025443/ses-7/mri/mori_sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XJ/q7/MD5E-s206899--c3bda88e3a268b24ec1dfc5c1a2a9d83.nii.gz/MD5E-s206899--c3bda88e3a268b24ec1dfc5c1a2a9d83.nii.gz

HNU_1/sub-0025443/ses-7/mri/mwp1sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zz/Q8/MD5E-s2604306--21defb910c8c12c763eaf50ddf414155.nii.gz/MD5E-s2604306--21defb910c8c12c763eaf50ddf414155.nii.gz

HNU_1/sub-0025443/ses-7/mri/mwp2sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kG/pP/MD5E-s2405303--6bc5c614cdffc4c267086c0103ff1ae0.nii.gz/MD5E-s2405303--6bc5c614cdffc4c267086c0103ff1ae0.nii.gz

HNU_1/sub-0025443/ses-7/mri/mwp3sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gp/m6/MD5E-s2624516--ff0b43579971fbf6ace47c6ff2d227b8.nii.gz/MD5E-s2624516--ff0b43579971fbf6ace47c6ff2d227b8.nii.gz

HNU_1/sub-0025443/ses-7/mri/neuromorphometrics_sub-0025443_ses-7_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

HNU_1/sub-0025443/ses-7/mri/neuromorphometrics_sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/94/4G/MD5E-s242275--b7f71b1802f26b54d2b05ea562ba438b.nii.gz/MD5E-s242275--b7f71b1802f26b54d2b05ea562ba438b.nii.gz

HNU_1/sub-0025443/ses-7/mri/p0sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k8/WJ/MD5E-s831168--4b2072c87ae7159efc8aaf77d03f3a22.nii.gz/MD5E-s831168--4b2072c87ae7159efc8aaf77d03f3a22.nii.gz

HNU_1/sub-0025443/ses-7/mri/p1sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X3/F2/MD5E-s878752--f24d29302eecc502c3aaee86c470d69b.nii.gz/MD5E-s878752--f24d29302eecc502c3aaee86c470d69b.nii.gz

HNU_1/sub-0025443/ses-7/mri/p2sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vf/JX/MD5E-s564244--e0015cd8fb32781298d2a9f75fd70141.nii.gz/MD5E-s564244--e0015cd8fb32781298d2a9f75fd70141.nii.gz

HNU_1/sub-0025443/ses-7/mri/p3sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/42/Fz/MD5E-s519627--20992c3dfb60e02a395d3f876e048088.nii.gz/MD5E-s519627--20992c3dfb60e02a395d3f876e048088.nii.gz

HNU_1/sub-0025443/ses-7/mri/rp1sub-0025443_ses-7_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6p/G7/MD5E-s479716--bf9e33a1c493fea1d601aa59c0c3e979.nii.gz/MD5E-s479716--bf9e33a1c493fea1d601aa59c0c3e979.nii.gz

HNU_1/sub-0025443/ses-7/mri/rp2sub-0025443_ses-7_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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HNU_1/sub-0025443/ses-7/mri/rp3sub-0025443_ses-7_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q7/GJ/MD5E-s326846--6228e8d563a845725adc48586dd520a4.nii.gz/MD5E-s326846--6228e8d563a845725adc48586dd520a4.nii.gz

HNU_1/sub-0025443/ses-7/mri/t_sub-0025443_ses-7_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WM/Mw/MD5E-s284--234518af147b4ba2caebb6518fb6fd5e.mat/MD5E-s284--234518af147b4ba2caebb6518fb6fd5e.mat

HNU_1/sub-0025443/ses-7/mri/t_sub-0025443_ses-7_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fm/Jp/MD5E-s283--d54a505eb8a126eb3118f7a93a447450.mat/MD5E-s283--d54a505eb8a126eb3118f7a93a447450.mat

HNU_1/sub-0025443/ses-7/mri/thalamus_sub-0025443_ses-7_run-1_T1w.csv

@@ -0,0 +1 @@
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HNU_1/sub-0025443/ses-7/mri/thalamus_sub-0025443_ses-7_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0M/3g/MD5E-s17532--68fffed4449468b6a861ba43ef658147.nii.gz/MD5E-s17532--68fffed4449468b6a861ba43ef658147.nii.gz

HNU_1/sub-0025443/ses-7/mri/wj_sub-0025443_ses-7_run-1_T1w.nii.gz

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