[DATALAD RUNCMD] Compute MRN/sub-0027414/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027414/ses-2/anat/sub-0027414_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027414/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027414/ses-2/label/catROI_sub-0027414_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/79/VX/MD5E-s61216--fe9bc1be9452c7a23425dd9122deb32f.mat/MD5E-s61216--fe9bc1be9452c7a23425dd9122deb32f.mat

MRN/sub-0027414/ses-2/label/catROI_sub-0027414_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j0/vz/MD5E-s189113--8b591a240f230a7e1f4d7eaded9c0c03.xml/MD5E-s189113--8b591a240f230a7e1f4d7eaded9c0c03.xml

MRN/sub-0027414/ses-2/label/catROIs_sub-0027414_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qW/gK/MD5E-s120076--d43540087e927d20312256b8d9065284.mat/MD5E-s120076--d43540087e927d20312256b8d9065284.mat

MRN/sub-0027414/ses-2/label/catROIs_sub-0027414_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pj/Q7/MD5E-s332104--04a9dd17794a71bb8b386c4131cf112b.xml/MD5E-s332104--04a9dd17794a71bb8b386c4131cf112b.xml

MRN/sub-0027414/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027414/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p9/61/MD5E-s157359--e26c353a7e8f7c52af5a81b1e332a85b.nii.gz/MD5E-s157359--e26c353a7e8f7c52af5a81b1e332a85b.nii.gz

MRN/sub-0027414/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027414/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J1/kJ/MD5E-s177223--7d25c0f6ef3c1ca6e2fc7e0ff6681ca4.nii.gz/MD5E-s177223--7d25c0f6ef3c1ca6e2fc7e0ff6681ca4.nii.gz

MRN/sub-0027414/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027414/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1z/7J/MD5E-s234739--ff846861f94f0189cba4385713dee14b.nii.gz/MD5E-s234739--ff846861f94f0189cba4385713dee14b.nii.gz

MRN/sub-0027414/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027414/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fw/mX/MD5E-s261091--9fb040bd8242a67a6415b6d948ea0f75.nii.gz/MD5E-s261091--9fb040bd8242a67a6415b6d948ea0f75.nii.gz

MRN/sub-0027414/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027414_ses-2_run-1_T1w.csv

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MRN/sub-0027414/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/22/72/MD5E-s25074--b36795641ba078868d56601794ebf8d3.nii.gz/MD5E-s25074--b36795641ba078868d56601794ebf8d3.nii.gz

MRN/sub-0027414/ses-2/mri/aal3_sub-0027414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027414/ses-2/mri/aal3_sub-0027414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mW/Kz/MD5E-s180681--041ede91ff270fa3209140c5cbe4110a.nii.gz/MD5E-s180681--041ede91ff270fa3209140c5cbe4110a.nii.gz

MRN/sub-0027414/ses-2/mri/anatomy3_sub-0027414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027414/ses-2/mri/anatomy3_sub-0027414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K7/QX/MD5E-s130255--dbb22c3bfc6020c634929c12a762d1f3.nii.gz/MD5E-s130255--dbb22c3bfc6020c634929c12a762d1f3.nii.gz

MRN/sub-0027414/ses-2/mri/anon_misub-0027414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Z/5f/MD5E-s9362786--472a19644d72ab1d4edefd50f11dfa21.nii.gz/MD5E-s9362786--472a19644d72ab1d4edefd50f11dfa21.nii.gz

MRN/sub-0027414/ses-2/mri/anon_msub-0027414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QJ/pM/MD5E-s10594375--8611505ddfcb4196fa927d8fa9c4b129.nii.gz/MD5E-s10594375--8611505ddfcb4196fa927d8fa9c4b129.nii.gz

MRN/sub-0027414/ses-2/mri/cat_sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/cobra_sub-0027414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027414/ses-2/mri/cobra_sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/hammers_sub-0027414_ses-2_run-1_T1w.csv

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MRN/sub-0027414/ses-2/mri/hammers_sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/ibsr_sub-0027414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MRN/sub-0027414/ses-2/mri/ibsr_sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/it_sub-0027414_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vf/JW/MD5E-s282--890de45a2c82e5334868e8680b7891a8.mat/MD5E-s282--890de45a2c82e5334868e8680b7891a8.mat

MRN/sub-0027414/ses-2/mri/it_sub-0027414_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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MRN/sub-0027414/ses-2/mri/iy_sub-0027414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QK/86/MD5E-s41282263--6e64a865b34aaa4971163525fe2ba389.nii.gz/MD5E-s41282263--6e64a865b34aaa4971163525fe2ba389.nii.gz

MRN/sub-0027414/ses-2/mri/julichbrain_sub-0027414_ses-2_run-1_T1w.csv

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MRN/sub-0027414/ses-2/mri/julichbrain_sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/lpba40_sub-0027414_ses-2_run-1_T1w.csv

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MRN/sub-0027414/ses-2/mri/lpba40_sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/m0wp1sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/m0wp2sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/m0wp3sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/mori_sub-0027414_ses-2_run-1_T1w.csv

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MRN/sub-0027414/ses-2/mri/mori_sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/mwp1sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/mwp2sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/mwp3sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/neuromorphometrics_sub-0027414_ses-2_run-1_T1w.csv

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MRN/sub-0027414/ses-2/mri/neuromorphometrics_sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/p0sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/p1sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/p2sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/p3sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/rp1sub-0027414_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027414/ses-2/mri/rp2sub-0027414_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027414/ses-2/mri/rp3sub-0027414_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027414/ses-2/mri/t_sub-0027414_ses-2_run-1_T1w_affine_reorient.mat

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MRN/sub-0027414/ses-2/mri/t_sub-0027414_ses-2_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027414/ses-2/mri/thalamus_sub-0027414_ses-2_run-1_T1w.csv

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MRN/sub-0027414/ses-2/mri/thalamus_sub-0027414_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027414/ses-2/mri/wj_sub-0027414_ses-2_run-1_T1w.nii.gz

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