[DATALAD RUNCMD] Compute UWM/sub-0027262/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/UWM/sub-0027262/ses-1/anat/sub-0027262_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "UWM/sub-0027262/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UWM/sub-0027262/ses-1/label/catROI_sub-0027262_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JG/qW/MD5E-s57991--f56b200ee9b88b2c937a8c70d37aada3.mat/MD5E-s57991--f56b200ee9b88b2c937a8c70d37aada3.mat

UWM/sub-0027262/ses-1/label/catROI_sub-0027262_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WZ/pV/MD5E-s188514--da811067c9830fef48cc2b068240ec65.xml/MD5E-s188514--da811067c9830fef48cc2b068240ec65.xml

UWM/sub-0027262/ses-1/label/catROIs_sub-0027262_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pj/gM/MD5E-s119963--8020de961aa6d44184ab133414975081.mat/MD5E-s119963--8020de961aa6d44184ab133414975081.mat

UWM/sub-0027262/ses-1/label/catROIs_sub-0027262_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9p/Ww/MD5E-s332077--963b37e1b266437723ad9f74acc83201.xml/MD5E-s332077--963b37e1b266437723ad9f74acc83201.xml

UWM/sub-0027262/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027262_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UWM/sub-0027262/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WM/kJ/MD5E-s200814--9cd652722f251a778b4c244a3a592041.nii.gz/MD5E-s200814--9cd652722f251a778b4c244a3a592041.nii.gz

UWM/sub-0027262/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027262_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UWM/sub-0027262/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0w/wv/MD5E-s226022--352848307d1b64437e5c5d930a158c48.nii.gz/MD5E-s226022--352848307d1b64437e5c5d930a158c48.nii.gz

UWM/sub-0027262/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027262_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UWM/sub-0027262/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PJ/4J/MD5E-s283968--42defdb195e65004dacf86261529fc02.nii.gz/MD5E-s283968--42defdb195e65004dacf86261529fc02.nii.gz

UWM/sub-0027262/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027262_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UWM/sub-0027262/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q5/mF/MD5E-s316727--b68eddaccf9f3f4deed98a11c0fb4a7d.nii.gz/MD5E-s316727--b68eddaccf9f3f4deed98a11c0fb4a7d.nii.gz

UWM/sub-0027262/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027262_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UWM/sub-0027262/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wQ/1x/MD5E-s25379--be5aa5ee1c1bca8886a15f2d4b219a78.nii.gz/MD5E-s25379--be5aa5ee1c1bca8886a15f2d4b219a78.nii.gz

UWM/sub-0027262/ses-1/mri/aal3_sub-0027262_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

UWM/sub-0027262/ses-1/mri/aal3_sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qx/QF/MD5E-s224636--e3f01428a3fe18894ed32eb069a86ed7.nii.gz/MD5E-s224636--e3f01428a3fe18894ed32eb069a86ed7.nii.gz

UWM/sub-0027262/ses-1/mri/anatomy3_sub-0027262_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UWM/sub-0027262/ses-1/mri/anatomy3_sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gZ/PF/MD5E-s162411--e9e742fda414a55ddd0ccbd6881a1683.nii.gz/MD5E-s162411--e9e742fda414a55ddd0ccbd6881a1683.nii.gz

UWM/sub-0027262/ses-1/mri/anon_misub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V1/p2/MD5E-s5182311--b1b4d18ded382f46ab38c4f2c5db1b27.nii.gz/MD5E-s5182311--b1b4d18ded382f46ab38c4f2c5db1b27.nii.gz

UWM/sub-0027262/ses-1/mri/anon_msub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WX/JX/MD5E-s10968803--f9a1bf1d0ad797c0aee3574cddda1081.nii.gz/MD5E-s10968803--f9a1bf1d0ad797c0aee3574cddda1081.nii.gz

UWM/sub-0027262/ses-1/mri/cat_sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qv/fZ/MD5E-s117660--af340b89769591d8c35f647580377feb.nii.gz/MD5E-s117660--af340b89769591d8c35f647580377feb.nii.gz

UWM/sub-0027262/ses-1/mri/cobra_sub-0027262_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UWM/sub-0027262/ses-1/mri/cobra_sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/66/1V/MD5E-s52092--ce7701bbfc3d321241703cab77dd97a0.nii.gz/MD5E-s52092--ce7701bbfc3d321241703cab77dd97a0.nii.gz

UWM/sub-0027262/ses-1/mri/hammers_sub-0027262_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UWM/sub-0027262/ses-1/mri/hammers_sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q2/jf/MD5E-s175511--c823314a0a4998d4bfb616055de91782.nii.gz/MD5E-s175511--c823314a0a4998d4bfb616055de91782.nii.gz

UWM/sub-0027262/ses-1/mri/ibsr_sub-0027262_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

UWM/sub-0027262/ses-1/mri/ibsr_sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2m/P1/MD5E-s181803--5eb6f1280bb1db24a030dc8b0d0652d3.nii.gz/MD5E-s181803--5eb6f1280bb1db24a030dc8b0d0652d3.nii.gz

UWM/sub-0027262/ses-1/mri/it_sub-0027262_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QK/fm/MD5E-s283--3687ed78deb47e2423c1eed1263f3fa6.mat/MD5E-s283--3687ed78deb47e2423c1eed1263f3fa6.mat

UWM/sub-0027262/ses-1/mri/it_sub-0027262_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pM/4k/MD5E-s282--94a91ef32502f7b44085c5d621785112.mat/MD5E-s282--94a91ef32502f7b44085c5d621785112.mat

UWM/sub-0027262/ses-1/mri/iy_sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Z/8M/MD5E-s50356104--d7b1442ffe79c05f5775cd3889b7f054.nii.gz/MD5E-s50356104--d7b1442ffe79c05f5775cd3889b7f054.nii.gz

UWM/sub-0027262/ses-1/mri/julichbrain_sub-0027262_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UWM/sub-0027262/ses-1/mri/julichbrain_sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2v/FJ/MD5E-s240829--512a6cdb97d7e31da2d863acf1590709.nii.gz/MD5E-s240829--512a6cdb97d7e31da2d863acf1590709.nii.gz

UWM/sub-0027262/ses-1/mri/lpba40_sub-0027262_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UWM/sub-0027262/ses-1/mri/lpba40_sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027262/ses-1/mri/m0wp1sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027262/ses-1/mri/m0wp2sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/J1/MD5E-s2372628--428b5d96fa16ffc9e294c70e5c74cf7c.nii.gz/MD5E-s2372628--428b5d96fa16ffc9e294c70e5c74cf7c.nii.gz

UWM/sub-0027262/ses-1/mri/m0wp3sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027262/ses-1/mri/mori_sub-0027262_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

UWM/sub-0027262/ses-1/mri/mori_sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027262/ses-1/mri/mwp1sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P7/6F/MD5E-s2580926--3ae8c3742a4be9e53e188073df2f2654.nii.gz/MD5E-s2580926--3ae8c3742a4be9e53e188073df2f2654.nii.gz

UWM/sub-0027262/ses-1/mri/mwp2sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027262/ses-1/mri/mwp3sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JQ/px/MD5E-s2570425--0cbc39dc059ba210a4bec6248cd6d086.nii.gz/MD5E-s2570425--0cbc39dc059ba210a4bec6248cd6d086.nii.gz

UWM/sub-0027262/ses-1/mri/neuromorphometrics_sub-0027262_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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UWM/sub-0027262/ses-1/mri/neuromorphometrics_sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027262/ses-1/mri/p0sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027262/ses-1/mri/p1sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027262/ses-1/mri/p2sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027262/ses-1/mri/p3sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027262/ses-1/mri/rp1sub-0027262_ses-1_run-1_T1w_affine.nii.gz

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UWM/sub-0027262/ses-1/mri/rp2sub-0027262_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027262/ses-1/mri/rp3sub-0027262_ses-1_run-1_T1w_affine.nii.gz

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UWM/sub-0027262/ses-1/mri/t_sub-0027262_ses-1_run-1_T1w_affine_reorient.mat

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UWM/sub-0027262/ses-1/mri/t_sub-0027262_ses-1_run-1_T1w_rigid_reorient.mat

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UWM/sub-0027262/ses-1/mri/thalamus_sub-0027262_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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UWM/sub-0027262/ses-1/mri/thalamus_sub-0027262_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027262/ses-1/mri/wj_sub-0027262_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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