[DATALAD RUNCMD] Compute BMB_1/sub-0003009/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BMB_1/sub-0003009/ses-1/anat/sub-0003009_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BMB_1/sub-0003009/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BMB_1/sub-0003009/ses-1/label/catROI_sub-0003009_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5G/ff/MD5E-s58154--4c45b2fcc386820d3c863a700dc08c32.mat/MD5E-s58154--4c45b2fcc386820d3c863a700dc08c32.mat

BMB_1/sub-0003009/ses-1/label/catROI_sub-0003009_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qv/mf/MD5E-s188640--ebbc47028c09abfd96645abbaeed52c9.xml/MD5E-s188640--ebbc47028c09abfd96645abbaeed52c9.xml

BMB_1/sub-0003009/ses-1/label/catROIs_sub-0003009_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wf/Pf/MD5E-s119936--bcac0f1be70813001e651c8b5aec6fac.mat/MD5E-s119936--bcac0f1be70813001e651c8b5aec6fac.mat

BMB_1/sub-0003009/ses-1/label/catROIs_sub-0003009_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5J/mm/MD5E-s332124--f49ff7dc40102edbfaa9b9fa1b8abd33.xml/MD5E-s332124--f49ff7dc40102edbfaa9b9fa1b8abd33.xml

BMB_1/sub-0003009/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003009_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BMB_1/sub-0003009/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1K/kg/MD5E-s179329--bf810377f528d224f599b7ceb444e729.nii.gz/MD5E-s179329--bf810377f528d224f599b7ceb444e729.nii.gz

BMB_1/sub-0003009/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003009_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BMB_1/sub-0003009/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/52/QM/MD5E-s202942--17364e10417398891158c439a247ed95.nii.gz/MD5E-s202942--17364e10417398891158c439a247ed95.nii.gz

BMB_1/sub-0003009/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003009_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BMB_1/sub-0003009/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gM/wX/MD5E-s272518--19bfa1ddff262395c612c51c6ff2aca8.nii.gz/MD5E-s272518--19bfa1ddff262395c612c51c6ff2aca8.nii.gz

BMB_1/sub-0003009/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003009_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BMB_1/sub-0003009/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qm/5W/MD5E-s304763--ceb503817d0a8fa4aca4df01507a33c7.nii.gz/MD5E-s304763--ceb503817d0a8fa4aca4df01507a33c7.nii.gz

BMB_1/sub-0003009/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003009_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BMB_1/sub-0003009/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X8/Mk/MD5E-s25493--ff0dabb373e02dd4ac906fcb6070e8de.nii.gz/MD5E-s25493--ff0dabb373e02dd4ac906fcb6070e8de.nii.gz

BMB_1/sub-0003009/ses-1/mri/aal3_sub-0003009_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BMB_1/sub-0003009/ses-1/mri/aal3_sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/37/6g/MD5E-s204503--75625b7ff98753d8bc0a099b135d1905.nii.gz/MD5E-s204503--75625b7ff98753d8bc0a099b135d1905.nii.gz

BMB_1/sub-0003009/ses-1/mri/anatomy3_sub-0003009_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BMB_1/sub-0003009/ses-1/mri/anatomy3_sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pw/jW/MD5E-s149293--6daccf0ba853aab82024231d3cbbb520.nii.gz/MD5E-s149293--6daccf0ba853aab82024231d3cbbb520.nii.gz

BMB_1/sub-0003009/ses-1/mri/anon_misub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pz/j4/MD5E-s6368044--ea8fec32325a3ec7ae970a8005a7c243.nii.gz/MD5E-s6368044--ea8fec32325a3ec7ae970a8005a7c243.nii.gz

BMB_1/sub-0003009/ses-1/mri/anon_msub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1j/Kk/MD5E-s12694980--21e27208122c33f1f27fd406b28c7aec.nii.gz/MD5E-s12694980--21e27208122c33f1f27fd406b28c7aec.nii.gz

BMB_1/sub-0003009/ses-1/mri/cat_sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G1/FX/MD5E-s109641--6d0a8b534f381dc77b84facfdfbabae5.nii.gz/MD5E-s109641--6d0a8b534f381dc77b84facfdfbabae5.nii.gz

BMB_1/sub-0003009/ses-1/mri/cobra_sub-0003009_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BMB_1/sub-0003009/ses-1/mri/cobra_sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pk/Mz/MD5E-s52071--c1bb2b81c1793aea6df7678b00896b22.nii.gz/MD5E-s52071--c1bb2b81c1793aea6df7678b00896b22.nii.gz

BMB_1/sub-0003009/ses-1/mri/hammers_sub-0003009_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BMB_1/sub-0003009/ses-1/mri/hammers_sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W3/pJ/MD5E-s160613--60c573d83f4ede9f46dd1332ab551ea1.nii.gz/MD5E-s160613--60c573d83f4ede9f46dd1332ab551ea1.nii.gz

BMB_1/sub-0003009/ses-1/mri/ibsr_sub-0003009_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BMB_1/sub-0003009/ses-1/mri/ibsr_sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mj/27/MD5E-s169680--13ce535d8d9eef000987aa77e1a19039.nii.gz/MD5E-s169680--13ce535d8d9eef000987aa77e1a19039.nii.gz

BMB_1/sub-0003009/ses-1/mri/it_sub-0003009_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K2/72/MD5E-s283--7fa2af287a31d55ca04bdce3d6f5e956.mat/MD5E-s283--7fa2af287a31d55ca04bdce3d6f5e956.mat

BMB_1/sub-0003009/ses-1/mri/it_sub-0003009_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/8F/MD5E-s283--02ecda0f8e5f15fd9c7b51535187cbe7.mat/MD5E-s283--02ecda0f8e5f15fd9c7b51535187cbe7.mat

BMB_1/sub-0003009/ses-1/mri/iy_sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/23/J3/MD5E-s51829255--96218c5b9200379dae83cf97c6599f4a.nii.gz/MD5E-s51829255--96218c5b9200379dae83cf97c6599f4a.nii.gz

BMB_1/sub-0003009/ses-1/mri/julichbrain_sub-0003009_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BMB_1/sub-0003009/ses-1/mri/julichbrain_sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gM/1W/MD5E-s218579--c81fbfa8c1aceb7d880152640c0a1a0f.nii.gz/MD5E-s218579--c81fbfa8c1aceb7d880152640c0a1a0f.nii.gz

BMB_1/sub-0003009/ses-1/mri/lpba40_sub-0003009_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BMB_1/sub-0003009/ses-1/mri/lpba40_sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6G/PX/MD5E-s157968--e1ace391427d7d63dae7e39f9a6f13de.nii.gz/MD5E-s157968--e1ace391427d7d63dae7e39f9a6f13de.nii.gz

BMB_1/sub-0003009/ses-1/mri/m0wp1sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FW/m3/MD5E-s2584593--a8e5d16ec557b97c893d2cdb59b322dc.nii.gz/MD5E-s2584593--a8e5d16ec557b97c893d2cdb59b322dc.nii.gz

BMB_1/sub-0003009/ses-1/mri/m0wp2sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1m/f3/MD5E-s2318712--88efe172f80b4732cbe94d807e2658ed.nii.gz/MD5E-s2318712--88efe172f80b4732cbe94d807e2658ed.nii.gz

BMB_1/sub-0003009/ses-1/mri/m0wp3sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MQ/vz/MD5E-s2611447--d8cfca21ebda07c1a5a5b7512c8a4d35.nii.gz/MD5E-s2611447--d8cfca21ebda07c1a5a5b7512c8a4d35.nii.gz

BMB_1/sub-0003009/ses-1/mri/mori_sub-0003009_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BMB_1/sub-0003009/ses-1/mri/mori_sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wp/3Z/MD5E-s187135--1dd367851378ee1f880c297847c0d940.nii.gz/MD5E-s187135--1dd367851378ee1f880c297847c0d940.nii.gz

BMB_1/sub-0003009/ses-1/mri/mwp1sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/23/v3/MD5E-s2584016--fc9406e43a6fbb32877ff701ec0f43c9.nii.gz/MD5E-s2584016--fc9406e43a6fbb32877ff701ec0f43c9.nii.gz

BMB_1/sub-0003009/ses-1/mri/mwp2sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W6/Jx/MD5E-s2315597--5a14c2a962f5446fdf95f784ff3dd5a3.nii.gz/MD5E-s2315597--5a14c2a962f5446fdf95f784ff3dd5a3.nii.gz

BMB_1/sub-0003009/ses-1/mri/mwp3sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2W/8k/MD5E-s2607583--f16ab1e6a97a0476a09a9a688fee7069.nii.gz/MD5E-s2607583--f16ab1e6a97a0476a09a9a688fee7069.nii.gz

BMB_1/sub-0003009/ses-1/mri/neuromorphometrics_sub-0003009_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BMB_1/sub-0003009/ses-1/mri/neuromorphometrics_sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zv/qw/MD5E-s218779--24f9c24ea26e9144755eb841a4f53f34.nii.gz/MD5E-s218779--24f9c24ea26e9144755eb841a4f53f34.nii.gz

BMB_1/sub-0003009/ses-1/mri/p0sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XV/2F/MD5E-s725715--531477d71e13a057d582a84a2b0aefba.nii.gz/MD5E-s725715--531477d71e13a057d582a84a2b0aefba.nii.gz

BMB_1/sub-0003009/ses-1/mri/p1sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8f/3z/MD5E-s766778--87a40aebecc3c551246390e0bcc21c60.nii.gz/MD5E-s766778--87a40aebecc3c551246390e0bcc21c60.nii.gz

BMB_1/sub-0003009/ses-1/mri/p2sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JK/PQ/MD5E-s489445--0849f42e83d34898d83a255e573db273.nii.gz/MD5E-s489445--0849f42e83d34898d83a255e573db273.nii.gz

BMB_1/sub-0003009/ses-1/mri/p3sub-0003009_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XW/W8/MD5E-s457291--62cd6bf38a0c577d30021dc832c0c820.nii.gz/MD5E-s457291--62cd6bf38a0c577d30021dc832c0c820.nii.gz

BMB_1/sub-0003009/ses-1/mri/rp1sub-0003009_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gg/mz/MD5E-s453491--72e60f87a374b083776c527dc2ef8289.nii.gz/MD5E-s453491--72e60f87a374b083776c527dc2ef8289.nii.gz

BMB_1/sub-0003009/ses-1/mri/rp2sub-0003009_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jw/j5/MD5E-s305665--39af0fd63c983097c30b3cc8e1bc3c17.nii.gz/MD5E-s305665--39af0fd63c983097c30b3cc8e1bc3c17.nii.gz

BMB_1/sub-0003009/ses-1/mri/rp3sub-0003009_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P1/pk/MD5E-s309030--7196122e8205d12aaac8938af2faeebe.nii.gz/MD5E-s309030--7196122e8205d12aaac8938af2faeebe.nii.gz

BMB_1/sub-0003009/ses-1/mri/t_sub-0003009_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kj/vJ/MD5E-s284--64089c56e7dd34c7e5c0b13386111bb8.mat/MD5E-s284--64089c56e7dd34c7e5c0b13386111bb8.mat

BMB_1/sub-0003009/ses-1/mri/t_sub-0003009_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/56/2j/MD5E-s284--7ec08a1b37da560cfa2a0f7f98f6b9b9.mat/MD5E-s284--7ec08a1b37da560cfa2a0f7f98f6b9b9.mat

BMB_1/sub-0003009/ses-1/mri/thalamus_sub-0003009_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BMB_1/sub-0003009/ses-1/mri/thalamus_sub-0003009_ses-1_run-1_T1w.nii.gz

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