[DATALAD RUNCMD] Compute SWU_1/sub-0027207/ses-3

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027207/ses-3/anat/sub-0027207_ses-3_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027207/ses-3"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027207/ses-3/label/catROI_sub-0027207_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XX/FM/MD5E-s58435--00fb7909894fa6b457f15176ae39bfac.mat/MD5E-s58435--00fb7909894fa6b457f15176ae39bfac.mat

SWU_1/sub-0027207/ses-3/label/catROI_sub-0027207_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QZ/k6/MD5E-s188841--f47dc582d926f98ddf894ca0279ab56d.xml/MD5E-s188841--f47dc582d926f98ddf894ca0279ab56d.xml

SWU_1/sub-0027207/ses-3/label/catROI_sub-0027207_ses-3_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Qz/V0/MD5E-s58525--82a8c4d3500f9e254b46684b38c6a0b5.mat/MD5E-s58525--82a8c4d3500f9e254b46684b38c6a0b5.mat

SWU_1/sub-0027207/ses-3/label/catROI_sub-0027207_ses-3_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/7v/wP/MD5E-s188898--477caa2da333df8315ced7fc9fdbb138.xml/MD5E-s188898--477caa2da333df8315ced7fc9fdbb138.xml

SWU_1/sub-0027207/ses-3/label/catROIs_sub-0027207_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gM/35/MD5E-s120101--bc0fd9d07de0893b1e5017d3209d81e7.mat/MD5E-s120101--bc0fd9d07de0893b1e5017d3209d81e7.mat

SWU_1/sub-0027207/ses-3/label/catROIs_sub-0027207_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zm/5V/MD5E-s332174--dfbc44a4ceafa39eb9b5affa31351eb5.xml/MD5E-s332174--dfbc44a4ceafa39eb9b5affa31351eb5.xml

SWU_1/sub-0027207/ses-3/label/catROIs_sub-0027207_ses-3_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/55/qg/MD5E-s120128--45d1961cce23721e44850826105f7da1.mat/MD5E-s120128--45d1961cce23721e44850826105f7da1.mat

SWU_1/sub-0027207/ses-3/label/catROIs_sub-0027207_ses-3_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/v5/7f/MD5E-s332032--0748334782e0949a83c79e33b14de17d.xml/MD5E-s332032--0748334782e0949a83c79e33b14de17d.xml

SWU_1/sub-0027207/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027207_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z9/v1/MD5E-s175773--6b866a3fc8e8b27925aacb4a60973b78.nii.gz/MD5E-s175773--6b866a3fc8e8b27925aacb4a60973b78.nii.gz

SWU_1/sub-0027207/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027207_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/F9/xK/MD5E-s176008--9805d6a363700a4cafdcb3e5ef76f1d6.nii.gz/MD5E-s176008--9805d6a363700a4cafdcb3e5ef76f1d6.nii.gz

SWU_1/sub-0027207/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027207_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q2/zX/MD5E-s196327--e637f39ff0a7517e6835f00129cfca6c.nii.gz/MD5E-s196327--e637f39ff0a7517e6835f00129cfca6c.nii.gz

SWU_1/sub-0027207/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027207_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/K5/vZ/MD5E-s196351--68871dd88085f9f60e67dc477c168fe1.nii.gz/MD5E-s196351--68871dd88085f9f60e67dc477c168fe1.nii.gz

SWU_1/sub-0027207/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027207_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qw/qF/MD5E-s264030--d8a2e22f4d1302b71e14ba1c69fbd59d.nii.gz/MD5E-s264030--d8a2e22f4d1302b71e14ba1c69fbd59d.nii.gz

SWU_1/sub-0027207/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027207_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Fz/gX/MD5E-s263269--f137bc80b3df503c8ad07c6607a89c38.nii.gz/MD5E-s263269--f137bc80b3df503c8ad07c6607a89c38.nii.gz

SWU_1/sub-0027207/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027207_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pp/4z/MD5E-s292064--12acd4190b14f919d4499362a250cf06.nii.gz/MD5E-s292064--12acd4190b14f919d4499362a250cf06.nii.gz

SWU_1/sub-0027207/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027207_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/w2/qQ/MD5E-s292485--65f052fa1b32f1fe59c84226d666d33d.nii.gz/MD5E-s292485--65f052fa1b32f1fe59c84226d666d33d.nii.gz

SWU_1/sub-0027207/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027207_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kP/55/MD5E-s25888--3d537cb0e6983d5af65fc5ff34fc9fe7.nii.gz/MD5E-s25888--3d537cb0e6983d5af65fc5ff34fc9fe7.nii.gz

SWU_1/sub-0027207/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027207_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/MZ/vm/MD5E-s25187--2cca5a45bb9dc93458a6f7b3ca02507c.nii.gz/MD5E-s25187--2cca5a45bb9dc93458a6f7b3ca02507c.nii.gz

SWU_1/sub-0027207/ses-3/mri/aal3_sub-0027207_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4w/Gj/MD5E-s196634--f10cfd421dee8f0ae6c2c97e9e9ed52d.nii.gz/MD5E-s196634--f10cfd421dee8f0ae6c2c97e9e9ed52d.nii.gz

SWU_1/sub-0027207/ses-3/mri/aal3_sub-0027207_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/53/5W/MD5E-s196241--9563411b51359f318d1c04eaf534f1ad.nii.gz/MD5E-s196241--9563411b51359f318d1c04eaf534f1ad.nii.gz

SWU_1/sub-0027207/ses-3/mri/anatomy3_sub-0027207_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZZ/vj/MD5E-s144736--a12f748a953f1b83037054c9694e99a6.nii.gz/MD5E-s144736--a12f748a953f1b83037054c9694e99a6.nii.gz

SWU_1/sub-0027207/ses-3/mri/anatomy3_sub-0027207_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4m/8X/MD5E-s144652--4c0dc372419028ee9f4228bce99918c1.nii.gz/MD5E-s144652--4c0dc372419028ee9f4228bce99918c1.nii.gz

SWU_1/sub-0027207/ses-3/mri/anon_misub-0027207_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5q/31/MD5E-s9681262--a68863b49f49dd6c475fd1ba6218b8cd.nii.gz/MD5E-s9681262--a68863b49f49dd6c475fd1ba6218b8cd.nii.gz

SWU_1/sub-0027207/ses-3/mri/anon_misub-0027207_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zv/Wv/MD5E-s9849950--54ec0ab6f64a1ffa8a7dd3689f37d03e.nii.gz/MD5E-s9849950--54ec0ab6f64a1ffa8a7dd3689f37d03e.nii.gz

SWU_1/sub-0027207/ses-3/mri/anon_msub-0027207_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vv/mP/MD5E-s10903616--8c66ee7a1b2fd679e97b7e8964dd6c83.nii.gz/MD5E-s10903616--8c66ee7a1b2fd679e97b7e8964dd6c83.nii.gz

SWU_1/sub-0027207/ses-3/mri/anon_msub-0027207_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/k2/gQ/MD5E-s11181677--6c0691540693f25b8e91db091ab2c2bd.nii.gz/MD5E-s11181677--6c0691540693f25b8e91db091ab2c2bd.nii.gz

SWU_1/sub-0027207/ses-3/mri/cat_sub-0027207_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/90/vV/MD5E-s106057--b3ec7429c7687848198841e16b2fb955.nii.gz/MD5E-s106057--b3ec7429c7687848198841e16b2fb955.nii.gz

SWU_1/sub-0027207/ses-3/mri/cat_sub-0027207_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vq/Q0/MD5E-s106513--2e315f8231590760249e41544a580d53.nii.gz/MD5E-s106513--2e315f8231590760249e41544a580d53.nii.gz

SWU_1/sub-0027207/ses-3/mri/cobra_sub-0027207_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mp/mq/MD5E-s51172--07a0700d2229572bf97a81e01f98db2f.nii.gz/MD5E-s51172--07a0700d2229572bf97a81e01f98db2f.nii.gz

SWU_1/sub-0027207/ses-3/mri/cobra_sub-0027207_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Mp/jz/MD5E-s51083--69d02dfa853ae2401c1d4fce0a38c8c6.nii.gz/MD5E-s51083--69d02dfa853ae2401c1d4fce0a38c8c6.nii.gz

SWU_1/sub-0027207/ses-3/mri/hammers_sub-0027207_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w5/KX/MD5E-s155544--1b409bdec01f7fbfc1cb459731bb4e95.nii.gz/MD5E-s155544--1b409bdec01f7fbfc1cb459731bb4e95.nii.gz

SWU_1/sub-0027207/ses-3/mri/hammers_sub-0027207_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027207/ses-3/mri/ibsr_sub-0027207_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/35/Qp/MD5E-s164125--f530493750b46939c5d7a35eebca049a.nii.gz/MD5E-s164125--f530493750b46939c5d7a35eebca049a.nii.gz

SWU_1/sub-0027207/ses-3/mri/ibsr_sub-0027207_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027207/ses-3/mri/it_sub-0027207_ses-3_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F3/17/MD5E-s284--1d6913fb6cecfeab267561aab50b0d36.mat/MD5E-s284--1d6913fb6cecfeab267561aab50b0d36.mat

SWU_1/sub-0027207/ses-3/mri/it_sub-0027207_ses-3_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gx/x8/MD5E-s284--9bfa95333051cd21cf83c3523fbcb2d6.mat/MD5E-s284--9bfa95333051cd21cf83c3523fbcb2d6.mat

SWU_1/sub-0027207/ses-3/mri/it_sub-0027207_ses-3_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027207/ses-3/mri/it_sub-0027207_ses-3_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027207/ses-3/mri/iy_sub-0027207_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027207/ses-3/mri/iy_sub-0027207_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027207/ses-3/mri/julichbrain_sub-0027207_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027207/ses-3/mri/julichbrain_sub-0027207_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027207/ses-3/mri/lpba40_sub-0027207_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027207/ses-3/mri/lpba40_sub-0027207_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027207/ses-3/mri/m0wp1sub-0027207_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027207/ses-3/mri/m0wp1sub-0027207_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027207/ses-3/mri/m0wp2sub-0027207_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027207/ses-3/mri/m0wp2sub-0027207_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027207/ses-3/mri/m0wp3sub-0027207_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027207/ses-3/mri/m0wp3sub-0027207_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027207/ses-3/mri/mori_sub-0027207_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027207/ses-3/mri/mori_sub-0027207_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027207/ses-3/mri/mwp1sub-0027207_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027207/ses-3/mri/mwp1sub-0027207_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027207/ses-3/mri/mwp2sub-0027207_ses-3_run-1_T1w.nii.gz

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