[DATALAD RUNCMD] Compute BNU_1/sub-0025884/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025884/ses-2/anat/sub-0025884_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025884/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025884/ses-2/label/catROI_sub-0025884_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1F/pM/MD5E-s58234--855a57bcaa7261fe9a3c8318000c4934.mat/MD5E-s58234--855a57bcaa7261fe9a3c8318000c4934.mat

BNU_1/sub-0025884/ses-2/label/catROI_sub-0025884_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FQ/20/MD5E-s188537--4adf6d46aaac789f9ed5522c437c9816.xml/MD5E-s188537--4adf6d46aaac789f9ed5522c437c9816.xml

BNU_1/sub-0025884/ses-2/label/catROIs_sub-0025884_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j2/5G/MD5E-s120100--22f7a93419b5ac497d638165baed7d52.mat/MD5E-s120100--22f7a93419b5ac497d638165baed7d52.mat

BNU_1/sub-0025884/ses-2/label/catROIs_sub-0025884_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G7/vZ/MD5E-s332091--b713965cd7ebb0b8d0f12bcc8a00804b.xml/MD5E-s332091--b713965cd7ebb0b8d0f12bcc8a00804b.xml

BNU_1/sub-0025884/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025884_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025884/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fk/zF/MD5E-s155881--f0917ab4c0daee52e357183a00f14155.nii.gz/MD5E-s155881--f0917ab4c0daee52e357183a00f14155.nii.gz

BNU_1/sub-0025884/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025884_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025884/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1G/15/MD5E-s175860--41d162fd0fef33831db16b929458e7c2.nii.gz/MD5E-s175860--41d162fd0fef33831db16b929458e7c2.nii.gz

BNU_1/sub-0025884/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025884_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025884/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kw/Jw/MD5E-s234959--6a0a760e6b3fac597d6367e0060106aa.nii.gz/MD5E-s234959--6a0a760e6b3fac597d6367e0060106aa.nii.gz

BNU_1/sub-0025884/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025884_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025884/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K3/Xp/MD5E-s263011--cbb6b783e12eeb170de72b2228ad38e7.nii.gz/MD5E-s263011--cbb6b783e12eeb170de72b2228ad38e7.nii.gz

BNU_1/sub-0025884/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025884_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025884/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/80/Wz/MD5E-s20820--a0707cb7dd061aea7032b58e76a20baa.nii.gz/MD5E-s20820--a0707cb7dd061aea7032b58e76a20baa.nii.gz

BNU_1/sub-0025884/ses-2/mri/aal3_sub-0025884_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025884/ses-2/mri/aal3_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xm/2m/MD5E-s177402--f3ad0c6300d1f33d7bfe25bcf1636a9d.nii.gz/MD5E-s177402--f3ad0c6300d1f33d7bfe25bcf1636a9d.nii.gz

BNU_1/sub-0025884/ses-2/mri/anatomy3_sub-0025884_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025884/ses-2/mri/anatomy3_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6f/Xq/MD5E-s125514--676149f836d09cff97e4ee8795e67dca.nii.gz/MD5E-s125514--676149f836d09cff97e4ee8795e67dca.nii.gz

BNU_1/sub-0025884/ses-2/mri/anon_misub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x2/MX/MD5E-s4445538--62d9f06db1da232ec13c1cc3fbb38218.nii.gz/MD5E-s4445538--62d9f06db1da232ec13c1cc3fbb38218.nii.gz

BNU_1/sub-0025884/ses-2/mri/anon_msub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vq/W1/MD5E-s10605635--c3f6025f93ffe56c77166f727fab2b04.nii.gz/MD5E-s10605635--c3f6025f93ffe56c77166f727fab2b04.nii.gz

BNU_1/sub-0025884/ses-2/mri/cat_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qq/6k/MD5E-s93830--9a1a7f9a2731927dbe3aa84322d41692.nii.gz/MD5E-s93830--9a1a7f9a2731927dbe3aa84322d41692.nii.gz

BNU_1/sub-0025884/ses-2/mri/cobra_sub-0025884_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025884/ses-2/mri/cobra_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/7p/MD5E-s43191--05738023a372d843b2105dae5512c6b2.nii.gz/MD5E-s43191--05738023a372d843b2105dae5512c6b2.nii.gz

BNU_1/sub-0025884/ses-2/mri/hammers_sub-0025884_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025884/ses-2/mri/hammers_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k1/Zj/MD5E-s139175--a304ee629bb343d72170ea72fafd2922.nii.gz/MD5E-s139175--a304ee629bb343d72170ea72fafd2922.nii.gz

BNU_1/sub-0025884/ses-2/mri/ibsr_sub-0025884_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025884/ses-2/mri/ibsr_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/27/fJ/MD5E-s147662--d5c7112e7954c513b9725a59d46c4556.nii.gz/MD5E-s147662--d5c7112e7954c513b9725a59d46c4556.nii.gz

BNU_1/sub-0025884/ses-2/mri/it_sub-0025884_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wX/Jw/MD5E-s283--3cd06ef3102f9dd848e2445e2df02adb.mat/MD5E-s283--3cd06ef3102f9dd848e2445e2df02adb.mat

BNU_1/sub-0025884/ses-2/mri/it_sub-0025884_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2z/Xk/MD5E-s283--97a30ac74df52701490a4a1ecd0472fc.mat/MD5E-s283--97a30ac74df52701490a4a1ecd0472fc.mat

BNU_1/sub-0025884/ses-2/mri/iy_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1M/gQ/MD5E-s39181631--d33ff1619cca270ca0e10d0f1570fac9.nii.gz/MD5E-s39181631--d33ff1619cca270ca0e10d0f1570fac9.nii.gz

BNU_1/sub-0025884/ses-2/mri/julichbrain_sub-0025884_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025884/ses-2/mri/julichbrain_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MX/Pg/MD5E-s186491--c73537427285969c1ac44d346f2e45a6.nii.gz/MD5E-s186491--c73537427285969c1ac44d346f2e45a6.nii.gz

BNU_1/sub-0025884/ses-2/mri/lpba40_sub-0025884_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025884/ses-2/mri/lpba40_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JX/Xf/MD5E-s138652--336f7854750bcced1288189be1ffd1f5.nii.gz/MD5E-s138652--336f7854750bcced1288189be1ffd1f5.nii.gz

BNU_1/sub-0025884/ses-2/mri/m0wp1sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XV/jk/MD5E-s2573298--823a4202ed3101b4030f8a8cdd1a33ba.nii.gz/MD5E-s2573298--823a4202ed3101b4030f8a8cdd1a33ba.nii.gz

BNU_1/sub-0025884/ses-2/mri/m0wp2sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zv/Qz/MD5E-s2277102--17a418c8f664794cc2e68ea5be5eb58d.nii.gz/MD5E-s2277102--17a418c8f664794cc2e68ea5be5eb58d.nii.gz

BNU_1/sub-0025884/ses-2/mri/m0wp3sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/95/pK/MD5E-s2414709--540b1dcbece88eccf86fbaf7cf7b9953.nii.gz/MD5E-s2414709--540b1dcbece88eccf86fbaf7cf7b9953.nii.gz

BNU_1/sub-0025884/ses-2/mri/mori_sub-0025884_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025884/ses-2/mri/mori_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4x/mv/MD5E-s162971--d908a01ac502a9101ff32aadaa238a75.nii.gz/MD5E-s162971--d908a01ac502a9101ff32aadaa238a75.nii.gz

BNU_1/sub-0025884/ses-2/mri/mwp1sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k1/4M/MD5E-s2572237--c619c6dfe963eb44c048b1cd25b59fb2.nii.gz/MD5E-s2572237--c619c6dfe963eb44c048b1cd25b59fb2.nii.gz

BNU_1/sub-0025884/ses-2/mri/mwp2sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z0/vJ/MD5E-s2271803--3edfd205d51f026a6950bfc4a33a2e38.nii.gz/MD5E-s2271803--3edfd205d51f026a6950bfc4a33a2e38.nii.gz

BNU_1/sub-0025884/ses-2/mri/mwp3sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6x/4f/MD5E-s2411588--216500b605ec586eeaf3b6f76faa1811.nii.gz/MD5E-s2411588--216500b605ec586eeaf3b6f76faa1811.nii.gz

BNU_1/sub-0025884/ses-2/mri/neuromorphometrics_sub-0025884_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025884/ses-2/mri/neuromorphometrics_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GJ/pK/MD5E-s190805--540c7a1584b42541f281b2a323901cfa.nii.gz/MD5E-s190805--540c7a1584b42541f281b2a323901cfa.nii.gz

BNU_1/sub-0025884/ses-2/mri/p0sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/32/X6/MD5E-s807534--d04784308203d6122a11bf17f1b399bd.nii.gz/MD5E-s807534--d04784308203d6122a11bf17f1b399bd.nii.gz

BNU_1/sub-0025884/ses-2/mri/p1sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wJ/Jj/MD5E-s826225--90f96f781eb97d03cc30058c8abee34d.nii.gz/MD5E-s826225--90f96f781eb97d03cc30058c8abee34d.nii.gz

BNU_1/sub-0025884/ses-2/mri/p2sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/96/MD5E-s561946--5436d2560c06c26acd92decc4866cd5d.nii.gz/MD5E-s561946--5436d2560c06c26acd92decc4866cd5d.nii.gz

BNU_1/sub-0025884/ses-2/mri/p3sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025884/ses-2/mri/rp1sub-0025884_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7p/Wk/MD5E-s431302--d359fadeb545436adde3bee5870467d6.nii.gz/MD5E-s431302--d359fadeb545436adde3bee5870467d6.nii.gz

BNU_1/sub-0025884/ses-2/mri/rp2sub-0025884_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025884/ses-2/mri/rp3sub-0025884_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025884/ses-2/mri/t_sub-0025884_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7k/9K/MD5E-s283--3aa865c3f95be9b384abea8d0a6872ae.mat/MD5E-s283--3aa865c3f95be9b384abea8d0a6872ae.mat

BNU_1/sub-0025884/ses-2/mri/t_sub-0025884_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p1/QZ/MD5E-s283--ca688b2bf006f8d6b69d92f826d3664d.mat/MD5E-s283--ca688b2bf006f8d6b69d92f826d3664d.mat

BNU_1/sub-0025884/ses-2/mri/thalamus_sub-0025884_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BNU_1/sub-0025884/ses-2/mri/thalamus_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/FK/MD5E-s13603--9ff7f4809951c5a349fb60c3773fb281.nii.gz/MD5E-s13603--9ff7f4809951c5a349fb60c3773fb281.nii.gz

BNU_1/sub-0025884/ses-2/mri/wj_sub-0025884_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025884/ses-2/mri/wmisub-0025884_ses-2_run-1_T1w.nii.gz

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