[DATALAD RUNCMD] Compute SWU_4/sub-0025769/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025769/ses-2/anat/sub-0025769_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025769/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025769/ses-2/label/catROI_sub-0025769_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J5/g7/MD5E-s61163--63951784d22298fc7ed435c65ef87f16.mat/MD5E-s61163--63951784d22298fc7ed435c65ef87f16.mat

SWU_4/sub-0025769/ses-2/label/catROI_sub-0025769_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W1/pw/MD5E-s188971--d39eb1281ae32e5bd885b1f386387d15.xml/MD5E-s188971--d39eb1281ae32e5bd885b1f386387d15.xml

SWU_4/sub-0025769/ses-2/label/catROIs_sub-0025769_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/26/G4/MD5E-s120105--847ab32414c34d460d37ca8241da3a40.mat/MD5E-s120105--847ab32414c34d460d37ca8241da3a40.mat

SWU_4/sub-0025769/ses-2/label/catROIs_sub-0025769_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X0/Wk/MD5E-s332177--f8fcf41420511dd15ef12e7f951b66d1.xml/MD5E-s332177--f8fcf41420511dd15ef12e7f951b66d1.xml

SWU_4/sub-0025769/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025769_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025769/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4j/Vg/MD5E-s153105--5d8e1e48f95034b8e6980c68203743d8.nii.gz/MD5E-s153105--5d8e1e48f95034b8e6980c68203743d8.nii.gz

SWU_4/sub-0025769/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025769_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025769/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xf/Kv/MD5E-s172162--d81029fa5bfab7db1992c3efbf864b1e.nii.gz/MD5E-s172162--d81029fa5bfab7db1992c3efbf864b1e.nii.gz

SWU_4/sub-0025769/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025769_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025769/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/71/5P/MD5E-s230764--2fe8c86a1fc419e61a977c1790185cfb.nii.gz/MD5E-s230764--2fe8c86a1fc419e61a977c1790185cfb.nii.gz

SWU_4/sub-0025769/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025769_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025769/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w3/w3/MD5E-s258023--6fda50cbfb80c5321836b3803c103e16.nii.gz/MD5E-s258023--6fda50cbfb80c5321836b3803c103e16.nii.gz

SWU_4/sub-0025769/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025769_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025769/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qX/w7/MD5E-s23565--a3823130adf92dfe84e423e5792398aa.nii.gz/MD5E-s23565--a3823130adf92dfe84e423e5792398aa.nii.gz

SWU_4/sub-0025769/ses-2/mri/aal3_sub-0025769_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025769/ses-2/mri/aal3_sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2F/04/MD5E-s173520--270eccb4e355d7dac3244d798ae395fd.nii.gz/MD5E-s173520--270eccb4e355d7dac3244d798ae395fd.nii.gz

SWU_4/sub-0025769/ses-2/mri/anatomy3_sub-0025769_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025769/ses-2/mri/anatomy3_sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X3/jw/MD5E-s127252--d1d2279e42cd926299f2d33551b7077c.nii.gz/MD5E-s127252--d1d2279e42cd926299f2d33551b7077c.nii.gz

SWU_4/sub-0025769/ses-2/mri/anon_misub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/26/68/MD5E-s8900230--53b98db68236859de1b0598b7ea60d6c.nii.gz/MD5E-s8900230--53b98db68236859de1b0598b7ea60d6c.nii.gz

SWU_4/sub-0025769/ses-2/mri/anon_msub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mq/xP/MD5E-s10195879--0574e6a3ce64dfba63fe462283c8cdf4.nii.gz/MD5E-s10195879--0574e6a3ce64dfba63fe462283c8cdf4.nii.gz

SWU_4/sub-0025769/ses-2/mri/cat_sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qv/kp/MD5E-s93732--64356501f46fabc49cd7015875fbda03.nii.gz/MD5E-s93732--64356501f46fabc49cd7015875fbda03.nii.gz

SWU_4/sub-0025769/ses-2/mri/cobra_sub-0025769_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025769/ses-2/mri/cobra_sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J7/8j/MD5E-s45029--e6fd2919286e4c005edcf0bba5b778fc.nii.gz/MD5E-s45029--e6fd2919286e4c005edcf0bba5b778fc.nii.gz

SWU_4/sub-0025769/ses-2/mri/hammers_sub-0025769_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025769/ses-2/mri/hammers_sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J2/gx/MD5E-s137207--452e27733f8dbac9e0aa9116bdca8b44.nii.gz/MD5E-s137207--452e27733f8dbac9e0aa9116bdca8b44.nii.gz

SWU_4/sub-0025769/ses-2/mri/ibsr_sub-0025769_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025769/ses-2/mri/ibsr_sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7j/8f/MD5E-s145351--9dace719b4367e881f40380989a1ff53.nii.gz/MD5E-s145351--9dace719b4367e881f40380989a1ff53.nii.gz

SWU_4/sub-0025769/ses-2/mri/it_sub-0025769_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FZ/X0/MD5E-s283--ca0d924a4c54fb271f4ca36c839bc9ef.mat/MD5E-s283--ca0d924a4c54fb271f4ca36c839bc9ef.mat

SWU_4/sub-0025769/ses-2/mri/it_sub-0025769_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jW/gM/MD5E-s281--112502dd9c188a4a25a80cbfdeac683b.mat/MD5E-s281--112502dd9c188a4a25a80cbfdeac683b.mat

SWU_4/sub-0025769/ses-2/mri/iy_sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0j/P2/MD5E-s40990856--db5fc3528f97dd62f6d2f9b1955af8d6.nii.gz/MD5E-s40990856--db5fc3528f97dd62f6d2f9b1955af8d6.nii.gz

SWU_4/sub-0025769/ses-2/mri/julichbrain_sub-0025769_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025769/ses-2/mri/julichbrain_sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MX/2k/MD5E-s184028--4fb14125cd58d2a7f949d8b4a188d7be.nii.gz/MD5E-s184028--4fb14125cd58d2a7f949d8b4a188d7be.nii.gz

SWU_4/sub-0025769/ses-2/mri/lpba40_sub-0025769_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025769/ses-2/mri/lpba40_sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K1/wk/MD5E-s134844--dcb250a15d5bd3edd67be2db96febfe0.nii.gz/MD5E-s134844--dcb250a15d5bd3edd67be2db96febfe0.nii.gz

SWU_4/sub-0025769/ses-2/mri/m0wp1sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q3/2x/MD5E-s2572044--7a8e5f34c4a95adbabf1f69c8af902f7.nii.gz/MD5E-s2572044--7a8e5f34c4a95adbabf1f69c8af902f7.nii.gz

SWU_4/sub-0025769/ses-2/mri/m0wp2sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vg/kz/MD5E-s2299116--86dccc63bc94416fa3281b8c324e84b1.nii.gz/MD5E-s2299116--86dccc63bc94416fa3281b8c324e84b1.nii.gz

SWU_4/sub-0025769/ses-2/mri/m0wp3sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zj/PV/MD5E-s2514820--4b6d536baafcb50100cc4bb062d633fd.nii.gz/MD5E-s2514820--4b6d536baafcb50100cc4bb062d633fd.nii.gz

SWU_4/sub-0025769/ses-2/mri/mori_sub-0025769_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025769/ses-2/mri/mori_sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wj/gJ/MD5E-s160660--d3d80594e96ffe94ed5a0369bfa34436.nii.gz/MD5E-s160660--d3d80594e96ffe94ed5a0369bfa34436.nii.gz

SWU_4/sub-0025769/ses-2/mri/mwp1sub-0025769_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/f9/3J/MD5E-s2581525--86aa084b6036b020d855488d7dce2e5f.nii.gz/MD5E-s2581525--86aa084b6036b020d855488d7dce2e5f.nii.gz

SWU_4/sub-0025769/ses-2/mri/mwp2sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0M/vf/MD5E-s2301230--88d471e6dab78460641fbc33d16c7ddd.nii.gz/MD5E-s2301230--88d471e6dab78460641fbc33d16c7ddd.nii.gz

SWU_4/sub-0025769/ses-2/mri/mwp3sub-0025769_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025769/ses-2/mri/neuromorphometrics_sub-0025769_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025769/ses-2/mri/neuromorphometrics_sub-0025769_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025769/ses-2/mri/p0sub-0025769_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qz/WX/MD5E-s567791--a7fce66248efe6bc35a87f6f312dbba6.nii.gz/MD5E-s567791--a7fce66248efe6bc35a87f6f312dbba6.nii.gz

SWU_4/sub-0025769/ses-2/mri/p1sub-0025769_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025769/ses-2/mri/p2sub-0025769_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025769/ses-2/mri/p3sub-0025769_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025769/ses-2/mri/rp1sub-0025769_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025769/ses-2/mri/rp2sub-0025769_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025769/ses-2/mri/rp3sub-0025769_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025769/ses-2/mri/t_sub-0025769_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025769/ses-2/mri/t_sub-0025769_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025769/ses-2/mri/thalamus_sub-0025769_ses-2_run-1_T1w.csv

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SWU_4/sub-0025769/ses-2/mri/thalamus_sub-0025769_ses-2_run-1_T1w.nii.gz

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