[DATALAD RUNCMD] Compute MRN/sub-0027412/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027412/ses-2/anat/sub-0027412_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027412/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027412/ses-2/label/catROI_sub-0027412_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p4/Pw/MD5E-s61239--51f6f784468160871ff31d13f4ee8779.mat/MD5E-s61239--51f6f784468160871ff31d13f4ee8779.mat

MRN/sub-0027412/ses-2/label/catROI_sub-0027412_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WJ/pJ/MD5E-s188922--3d8d637f6af16733e946142067515fc8.xml/MD5E-s188922--3d8d637f6af16733e946142067515fc8.xml

MRN/sub-0027412/ses-2/label/catROIs_sub-0027412_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jZ/QM/MD5E-s120129--1f3a8f2f57e8147c84ca683ca61aabb9.mat/MD5E-s120129--1f3a8f2f57e8147c84ca683ca61aabb9.mat

MRN/sub-0027412/ses-2/label/catROIs_sub-0027412_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j1/5F/MD5E-s332119--279e5c6f7145274ab2d1ff16b78e75f6.xml/MD5E-s332119--279e5c6f7145274ab2d1ff16b78e75f6.xml

MRN/sub-0027412/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027412_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027412/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027412_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7z/11/MD5E-s172867--ea5eec09e122ecf04c5a578073148ed3.nii.gz/MD5E-s172867--ea5eec09e122ecf04c5a578073148ed3.nii.gz

MRN/sub-0027412/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027412_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027412/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027412_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6X/gk/MD5E-s193176--b7206a509a12ffecaadb106312e94d5e.nii.gz/MD5E-s193176--b7206a509a12ffecaadb106312e94d5e.nii.gz

MRN/sub-0027412/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027412_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027412/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027412_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vW/MK/MD5E-s258224--07cc141c152239597c016703bf5926da.nii.gz/MD5E-s258224--07cc141c152239597c016703bf5926da.nii.gz

MRN/sub-0027412/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027412_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027412/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027412_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G9/XG/MD5E-s285110--c340dc93be50592be73f8b87ae8ed9ca.nii.gz/MD5E-s285110--c340dc93be50592be73f8b87ae8ed9ca.nii.gz

MRN/sub-0027412/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027412_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027412/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027412_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V2/WK/MD5E-s25384--5086fe1c4b9a294daa5b62b1ae239384.nii.gz/MD5E-s25384--5086fe1c4b9a294daa5b62b1ae239384.nii.gz

MRN/sub-0027412/ses-2/mri/aal3_sub-0027412_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027412/ses-2/mri/aal3_sub-0027412_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027412/ses-2/mri/anatomy3_sub-0027412_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027412/ses-2/mri/anatomy3_sub-0027412_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZV/3P/MD5E-s141328--f2e3aef05b1f76d3107303754381b08a.nii.gz/MD5E-s141328--f2e3aef05b1f76d3107303754381b08a.nii.gz

MRN/sub-0027412/ses-2/mri/anon_misub-0027412_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mJ/XG/MD5E-s9117825--b705491005f2c80a59a49424df648bb4.nii.gz/MD5E-s9117825--b705491005f2c80a59a49424df648bb4.nii.gz

MRN/sub-0027412/ses-2/mri/anon_msub-0027412_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KJ/3p/MD5E-s9793637--3c6a0b6706215369b0bed63b90ac6f56.nii.gz/MD5E-s9793637--3c6a0b6706215369b0bed63b90ac6f56.nii.gz

MRN/sub-0027412/ses-2/mri/cat_sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/cobra_sub-0027412_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027412/ses-2/mri/cobra_sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/hammers_sub-0027412_ses-2_run-1_T1w.csv

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MRN/sub-0027412/ses-2/mri/hammers_sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/ibsr_sub-0027412_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MRN/sub-0027412/ses-2/mri/ibsr_sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/it_sub-0027412_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4w/kj/MD5E-s283--569c79f0a2f2ab8564b11d763bdb2654.mat/MD5E-s283--569c79f0a2f2ab8564b11d763bdb2654.mat

MRN/sub-0027412/ses-2/mri/it_sub-0027412_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qj/XW/MD5E-s283--db4fcbe92cb8faf681a2dc092a7783e0.mat/MD5E-s283--db4fcbe92cb8faf681a2dc092a7783e0.mat

MRN/sub-0027412/ses-2/mri/iy_sub-0027412_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027412/ses-2/mri/julichbrain_sub-0027412_ses-2_run-1_T1w.csv

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MRN/sub-0027412/ses-2/mri/julichbrain_sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/lpba40_sub-0027412_ses-2_run-1_T1w.csv

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MRN/sub-0027412/ses-2/mri/lpba40_sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/m0wp1sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/m0wp2sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/m0wp3sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/mori_sub-0027412_ses-2_run-1_T1w.csv

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MRN/sub-0027412/ses-2/mri/mori_sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/mwp1sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/mwp2sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/mwp3sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/neuromorphometrics_sub-0027412_ses-2_run-1_T1w.csv

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MRN/sub-0027412/ses-2/mri/neuromorphometrics_sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/p0sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/p1sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/p2sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/p3sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/rp1sub-0027412_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027412/ses-2/mri/rp2sub-0027412_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027412/ses-2/mri/rp3sub-0027412_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027412/ses-2/mri/t_sub-0027412_ses-2_run-1_T1w_affine_reorient.mat

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MRN/sub-0027412/ses-2/mri/t_sub-0027412_ses-2_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027412/ses-2/mri/thalamus_sub-0027412_ses-2_run-1_T1w.csv

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MRN/sub-0027412/ses-2/mri/thalamus_sub-0027412_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027412/ses-2/mri/wj_sub-0027412_ses-2_run-1_T1w.nii.gz

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