[DATALAD RUNCMD] Compute MRN/sub-0027054/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027054/ses-2/anat/sub-0027054_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027054/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027054/ses-2/label/catROI_sub-0027054_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/70/k5/MD5E-s61244--3115f280e0ab989af409d8d0d5aa73e8.mat/MD5E-s61244--3115f280e0ab989af409d8d0d5aa73e8.mat

MRN/sub-0027054/ses-2/label/catROI_sub-0027054_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gm/JW/MD5E-s188990--1d6fd301657a8561f2bf1f0a25ecef71.xml/MD5E-s188990--1d6fd301657a8561f2bf1f0a25ecef71.xml

MRN/sub-0027054/ses-2/label/catROIs_sub-0027054_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mG/wk/MD5E-s120134--b65d269aaf02b50ad6fa68660dcd87e7.mat/MD5E-s120134--b65d269aaf02b50ad6fa68660dcd87e7.mat

MRN/sub-0027054/ses-2/label/catROIs_sub-0027054_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6P/Jj/MD5E-s332106--8d2acfca5f8670b1f1ab650c4781cce5.xml/MD5E-s332106--8d2acfca5f8670b1f1ab650c4781cce5.xml

MRN/sub-0027054/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027054_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027054/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027054_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9V/Qk/MD5E-s170451--2c16935ea04324b32d1f99a5f2e0768c.nii.gz/MD5E-s170451--2c16935ea04324b32d1f99a5f2e0768c.nii.gz

MRN/sub-0027054/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027054_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027054/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027054_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GJ/k0/MD5E-s189846--1c80d2c329ca44538cfa7128668b3afd.nii.gz/MD5E-s189846--1c80d2c329ca44538cfa7128668b3afd.nii.gz

MRN/sub-0027054/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027054_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027054/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027054_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2p/8f/MD5E-s253172--efe3b270b6c49eae54e0b167928f93a1.nii.gz/MD5E-s253172--efe3b270b6c49eae54e0b167928f93a1.nii.gz

MRN/sub-0027054/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027054_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027054/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027054_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PG/fV/MD5E-s280408--6fd6e1a7897c3bb02c1baa3e999d1aba.nii.gz/MD5E-s280408--6fd6e1a7897c3bb02c1baa3e999d1aba.nii.gz

MRN/sub-0027054/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027054_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027054/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027054_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/56/x1/MD5E-s25791--3047cd4546e4cf565c51636789a0743b.nii.gz/MD5E-s25791--3047cd4546e4cf565c51636789a0743b.nii.gz

MRN/sub-0027054/ses-2/mri/aal3_sub-0027054_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027054/ses-2/mri/aal3_sub-0027054_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027054/ses-2/mri/anatomy3_sub-0027054_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027054/ses-2/mri/anatomy3_sub-0027054_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v3/Jj/MD5E-s139589--484ca7f0f2c89cd4b3d679dfe0870558.nii.gz/MD5E-s139589--484ca7f0f2c89cd4b3d679dfe0870558.nii.gz

MRN/sub-0027054/ses-2/mri/anon_misub-0027054_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xz/Kq/MD5E-s9290173--64ffaab43fa144c539b5bc1e6f253368.nii.gz/MD5E-s9290173--64ffaab43fa144c539b5bc1e6f253368.nii.gz

MRN/sub-0027054/ses-2/mri/anon_msub-0027054_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q0/8j/MD5E-s10583551--a58cd37b43637c761bae2953202dd2da.nii.gz/MD5E-s10583551--a58cd37b43637c761bae2953202dd2da.nii.gz

MRN/sub-0027054/ses-2/mri/cat_sub-0027054_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027054/ses-2/mri/cobra_sub-0027054_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027054/ses-2/mri/cobra_sub-0027054_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Zg/qx/MD5E-s49947--de129a7b6c857d52f831774a070d6c5f.nii.gz/MD5E-s49947--de129a7b6c857d52f831774a070d6c5f.nii.gz

MRN/sub-0027054/ses-2/mri/hammers_sub-0027054_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MRN/sub-0027054/ses-2/mri/hammers_sub-0027054_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027054/ses-2/mri/ibsr_sub-0027054_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MRN/sub-0027054/ses-2/mri/ibsr_sub-0027054_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027054/ses-2/mri/it_sub-0027054_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QK/q5/MD5E-s284--eddc3064dfe08893f71c2aac917ee79a.mat/MD5E-s284--eddc3064dfe08893f71c2aac917ee79a.mat

MRN/sub-0027054/ses-2/mri/it_sub-0027054_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jQ/Xq/MD5E-s283--3f72a8318dd44df9518d15d77097a301.mat/MD5E-s283--3f72a8318dd44df9518d15d77097a301.mat

MRN/sub-0027054/ses-2/mri/iy_sub-0027054_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027054/ses-2/mri/julichbrain_sub-0027054_ses-2_run-1_T1w.csv

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MRN/sub-0027054/ses-2/mri/julichbrain_sub-0027054_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027054/ses-2/mri/lpba40_sub-0027054_ses-2_run-1_T1w.csv

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MRN/sub-0027054/ses-2/mri/lpba40_sub-0027054_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027054/ses-2/mri/m0wp1sub-0027054_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027054/ses-2/mri/m0wp2sub-0027054_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027054/ses-2/mri/m0wp3sub-0027054_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027054/ses-2/mri/mori_sub-0027054_ses-2_run-1_T1w.csv

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MRN/sub-0027054/ses-2/mri/mori_sub-0027054_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027054/ses-2/mri/mwp1sub-0027054_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027054/ses-2/mri/mwp2sub-0027054_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027054/ses-2/mri/mwp3sub-0027054_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027054/ses-2/mri/neuromorphometrics_sub-0027054_ses-2_run-1_T1w.csv

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MRN/sub-0027054/ses-2/mri/neuromorphometrics_sub-0027054_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027054/ses-2/mri/p0sub-0027054_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027054/ses-2/mri/p1sub-0027054_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027054/ses-2/mri/p2sub-0027054_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027054/ses-2/mri/p3sub-0027054_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027054/ses-2/mri/rp1sub-0027054_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027054/ses-2/mri/rp2sub-0027054_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027054/ses-2/mri/rp3sub-0027054_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027054/ses-2/mri/t_sub-0027054_ses-2_run-1_T1w_affine_reorient.mat

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MRN/sub-0027054/ses-2/mri/t_sub-0027054_ses-2_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027054/ses-2/mri/thalamus_sub-0027054_ses-2_run-1_T1w.csv

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MRN/sub-0027054/ses-2/mri/thalamus_sub-0027054_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027054/ses-2/mri/wj_sub-0027054_ses-2_run-1_T1w.nii.gz

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