[DATALAD RUNCMD] Compute NYU_2/sub-0025063/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025063/ses-1/anat/sub-0025063_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025063/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025063/ses-1/label/catROI_sub-0025063_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8g/FW/MD5E-s57992--1e26f3579be800e70040de9fb8fefb5f.mat/MD5E-s57992--1e26f3579be800e70040de9fb8fefb5f.mat

NYU_2/sub-0025063/ses-1/label/catROI_sub-0025063_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8G/q0/MD5E-s188908--c19a3fb5acb1260c6ca865ae3e7c6053.xml/MD5E-s188908--c19a3fb5acb1260c6ca865ae3e7c6053.xml

NYU_2/sub-0025063/ses-1/label/catROI_sub-0025063_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5J/25/MD5E-s57874--1e6651d19e097c4a965b50c2a2a3d3dd.mat/MD5E-s57874--1e6651d19e097c4a965b50c2a2a3d3dd.mat

NYU_2/sub-0025063/ses-1/label/catROI_sub-0025063_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Gm/21/MD5E-s189001--0d2fb91a6c054b091858c04836eeaa55.xml/MD5E-s189001--0d2fb91a6c054b091858c04836eeaa55.xml

NYU_2/sub-0025063/ses-1/label/catROIs_sub-0025063_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1x/k3/MD5E-s120282--a698ab8932c16f86a25a0e763168a6a1.mat/MD5E-s120282--a698ab8932c16f86a25a0e763168a6a1.mat

NYU_2/sub-0025063/ses-1/label/catROIs_sub-0025063_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xG/Jz/MD5E-s332142--39056d725ec65eea86a6cc41e034d960.xml/MD5E-s332142--39056d725ec65eea86a6cc41e034d960.xml

NYU_2/sub-0025063/ses-1/label/catROIs_sub-0025063_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/xK/WZ/MD5E-s120247--db23a0003978a2a7b9ce3a077d3bea10.mat/MD5E-s120247--db23a0003978a2a7b9ce3a077d3bea10.mat

NYU_2/sub-0025063/ses-1/label/catROIs_sub-0025063_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/p0/ZZ/MD5E-s332203--cf0a8c2ce82181729efed7fe01417bf1.xml/MD5E-s332203--cf0a8c2ce82181729efed7fe01417bf1.xml

NYU_2/sub-0025063/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025063_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Q/3Q/MD5E-s146405--c2b12403d88cbb20c1703a7dd40cdec2.nii.gz/MD5E-s146405--c2b12403d88cbb20c1703a7dd40cdec2.nii.gz

NYU_2/sub-0025063/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025063_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5Q/J9/MD5E-s145891--f107dc7ae260d72114ca7ac429bebbd0.nii.gz/MD5E-s145891--f107dc7ae260d72114ca7ac429bebbd0.nii.gz

NYU_2/sub-0025063/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025063_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/84/gq/MD5E-s162033--ab07b9a41e277edb001799a8c26ca326.nii.gz/MD5E-s162033--ab07b9a41e277edb001799a8c26ca326.nii.gz

NYU_2/sub-0025063/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025063_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Q1/wF/MD5E-s161798--3c6eb41a902546cdfbeead96fba81b4a.nii.gz/MD5E-s161798--3c6eb41a902546cdfbeead96fba81b4a.nii.gz

NYU_2/sub-0025063/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025063_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X9/GK/MD5E-s219565--32fe49a93dd0a57421b8238a6b4a7de7.nii.gz/MD5E-s219565--32fe49a93dd0a57421b8238a6b4a7de7.nii.gz

NYU_2/sub-0025063/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025063_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/71/gQ/MD5E-s218942--41751e1d9e2cffb66d083ca9caf295cd.nii.gz/MD5E-s218942--41751e1d9e2cffb66d083ca9caf295cd.nii.gz

NYU_2/sub-0025063/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025063_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3x/Q8/MD5E-s242470--bae037b152e94eebc915fd2106882de7.nii.gz/MD5E-s242470--bae037b152e94eebc915fd2106882de7.nii.gz

NYU_2/sub-0025063/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025063_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Mq/8Q/MD5E-s242280--85f159b2d02fd4d1de0e21625bfcb534.nii.gz/MD5E-s242280--85f159b2d02fd4d1de0e21625bfcb534.nii.gz

NYU_2/sub-0025063/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025063_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xp/zV/MD5E-s19162--23ca2116207f783e334ffaea7f45bfc2.nii.gz/MD5E-s19162--23ca2116207f783e334ffaea7f45bfc2.nii.gz

NYU_2/sub-0025063/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025063_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8w/mX/MD5E-s19454--c47801d4ff4066171ea7e3e38e7d8118.nii.gz/MD5E-s19454--c47801d4ff4066171ea7e3e38e7d8118.nii.gz

NYU_2/sub-0025063/ses-1/mri/aal3_sub-0025063_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JX/gX/MD5E-s163258--331c26d5ae25b9c141a3602cd5777c54.nii.gz/MD5E-s163258--331c26d5ae25b9c141a3602cd5777c54.nii.gz

NYU_2/sub-0025063/ses-1/mri/aal3_sub-0025063_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/13/G9/MD5E-s163875--09808df6ae4b7d754fa0e76174ed9495.nii.gz/MD5E-s163875--09808df6ae4b7d754fa0e76174ed9495.nii.gz

NYU_2/sub-0025063/ses-1/mri/anatomy3_sub-0025063_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gZ/zX/MD5E-s117830--61f9756ee2063d77cec0fc184bd40579.nii.gz/MD5E-s117830--61f9756ee2063d77cec0fc184bd40579.nii.gz

NYU_2/sub-0025063/ses-1/mri/anatomy3_sub-0025063_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gF/zG/MD5E-s117601--c907f07083a821d6ae848160564f8cf7.nii.gz/MD5E-s117601--c907f07083a821d6ae848160564f8cf7.nii.gz

NYU_2/sub-0025063/ses-1/mri/anon_misub-0025063_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zk/4j/MD5E-s3419546--811e8ffda3d67fc1a189147fedbc7850.nii.gz/MD5E-s3419546--811e8ffda3d67fc1a189147fedbc7850.nii.gz

NYU_2/sub-0025063/ses-1/mri/anon_misub-0025063_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Xm/pM/MD5E-s3458778--55b9c2e1175216548b4884d0df6432fa.nii.gz/MD5E-s3458778--55b9c2e1175216548b4884d0df6432fa.nii.gz

NYU_2/sub-0025063/ses-1/mri/anon_msub-0025063_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/f0/qQ/MD5E-s7352214--079fff8c886eef8f7f95bb83b6807b29.nii.gz/MD5E-s7352214--079fff8c886eef8f7f95bb83b6807b29.nii.gz

NYU_2/sub-0025063/ses-1/mri/anon_msub-0025063_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kq/km/MD5E-s9825966--834f52e87b45bed66f33bf44b607a035.nii.gz/MD5E-s9825966--834f52e87b45bed66f33bf44b607a035.nii.gz

NYU_2/sub-0025063/ses-1/mri/cat_sub-0025063_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6f/3G/MD5E-s89017--a9a44fc2eb20fe4998ed00a1fec43a11.nii.gz/MD5E-s89017--a9a44fc2eb20fe4998ed00a1fec43a11.nii.gz

NYU_2/sub-0025063/ses-1/mri/cat_sub-0025063_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/28/8p/MD5E-s87649--aa9e89d098099a727f0a92c478ce82e0.nii.gz/MD5E-s87649--aa9e89d098099a727f0a92c478ce82e0.nii.gz

NYU_2/sub-0025063/ses-1/mri/cobra_sub-0025063_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/32/zf/MD5E-s40494--a7efd5cc252f8af778c7586f22962deb.nii.gz/MD5E-s40494--a7efd5cc252f8af778c7586f22962deb.nii.gz

NYU_2/sub-0025063/ses-1/mri/cobra_sub-0025063_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/KK/1z/MD5E-s40544--f6f188582118e206d0ba2fb463d5a812.nii.gz/MD5E-s40544--f6f188582118e206d0ba2fb463d5a812.nii.gz

NYU_2/sub-0025063/ses-1/mri/hammers_sub-0025063_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zx/pq/MD5E-s127292--a3f048fc3c43c49dc936b6cabb40aa1b.nii.gz/MD5E-s127292--a3f048fc3c43c49dc936b6cabb40aa1b.nii.gz

NYU_2/sub-0025063/ses-1/mri/hammers_sub-0025063_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025063/ses-1/mri/ibsr_sub-0025063_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025063/ses-1/mri/ibsr_sub-0025063_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025063/ses-1/mri/it_sub-0025063_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M6/jQ/MD5E-s282--5a4b4e616d76c7cf18b3f3f1ddd13b03.mat/MD5E-s282--5a4b4e616d76c7cf18b3f3f1ddd13b03.mat

NYU_2/sub-0025063/ses-1/mri/it_sub-0025063_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wm/MQ/MD5E-s283--6d00e2a44ee767bd55fc1fd6d69e9432.mat/MD5E-s283--6d00e2a44ee767bd55fc1fd6d69e9432.mat

NYU_2/sub-0025063/ses-1/mri/it_sub-0025063_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/q0/M4/MD5E-s283--f45c6bc8abb35e084d07816f29eb6e5f.mat/MD5E-s283--f45c6bc8abb35e084d07816f29eb6e5f.mat

NYU_2/sub-0025063/ses-1/mri/it_sub-0025063_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025063/ses-1/mri/iy_sub-0025063_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025063/ses-1/mri/iy_sub-0025063_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025063/ses-1/mri/julichbrain_sub-0025063_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025063/ses-1/mri/julichbrain_sub-0025063_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025063/ses-1/mri/lpba40_sub-0025063_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025063/ses-1/mri/lpba40_sub-0025063_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025063/ses-1/mri/m0wp1sub-0025063_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025063/ses-1/mri/m0wp1sub-0025063_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025063/ses-1/mri/m0wp2sub-0025063_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025063/ses-1/mri/m0wp2sub-0025063_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025063/ses-1/mri/m0wp3sub-0025063_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025063/ses-1/mri/m0wp3sub-0025063_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025063/ses-1/mri/mori_sub-0025063_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025063/ses-1/mri/mori_sub-0025063_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025063/ses-1/mri/mwp1sub-0025063_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025063/ses-1/mri/mwp1sub-0025063_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025063/ses-1/mri/mwp2sub-0025063_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025063/ses-1/mri/mwp2sub-0025063_ses-1_run-2_T1w.nii.gz

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