[DATALAD RUNCMD] Compute NYU_2/sub-0025106/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025106/ses-1/anat/sub-0025106_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025106/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025106/ses-1/label/catROI_sub-0025106_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/mz/f5/MD5E-s57755--8ba8b541c6e197f803c2dda9cf9e366e.mat/MD5E-s57755--8ba8b541c6e197f803c2dda9cf9e366e.mat

NYU_2/sub-0025106/ses-1/label/catROI_sub-0025106_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/49/0J/MD5E-s189008--bf3cc286f73226fb13c88e5d6c8ff009.xml/MD5E-s189008--bf3cc286f73226fb13c88e5d6c8ff009.xml

NYU_2/sub-0025106/ses-1/label/catROI_sub-0025106_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vj/fP/MD5E-s57734--ae02882a14884d98b3c7f7219b10fe9b.mat/MD5E-s57734--ae02882a14884d98b3c7f7219b10fe9b.mat

NYU_2/sub-0025106/ses-1/label/catROI_sub-0025106_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0F/8v/MD5E-s189032--39ec12829a6e379ad8146836e9c73c2e.xml/MD5E-s189032--39ec12829a6e379ad8146836e9c73c2e.xml

NYU_2/sub-0025106/ses-1/label/catROIs_sub-0025106_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2Z/K5/MD5E-s120379--e43ba1d76eac3192943e84bdb339bae1.mat/MD5E-s120379--e43ba1d76eac3192943e84bdb339bae1.mat

NYU_2/sub-0025106/ses-1/label/catROIs_sub-0025106_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/pp/76/MD5E-s332145--e1c90acf1819c99d9f73d6446f0ea837.xml/MD5E-s332145--e1c90acf1819c99d9f73d6446f0ea837.xml

NYU_2/sub-0025106/ses-1/label/catROIs_sub-0025106_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0K/8z/MD5E-s120287--c320740eaf73d1589879f312711a887b.mat/MD5E-s120287--c320740eaf73d1589879f312711a887b.mat

NYU_2/sub-0025106/ses-1/label/catROIs_sub-0025106_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0X/6x/MD5E-s332200--f524a3bd05aba3224222e0ea0532d715.xml/MD5E-s332200--f524a3bd05aba3224222e0ea0532d715.xml

NYU_2/sub-0025106/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025106_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8P/q2/MD5E-s134892--a0f9af638f6319f781d66953e8c4746f.nii.gz/MD5E-s134892--a0f9af638f6319f781d66953e8c4746f.nii.gz

NYU_2/sub-0025106/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025106_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2p/1V/MD5E-s134540--fd5543f79baeb3e832a09d4f0e23a35a.nii.gz/MD5E-s134540--fd5543f79baeb3e832a09d4f0e23a35a.nii.gz

NYU_2/sub-0025106/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025106_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/67/f6/MD5E-s152265--ce07b2b7cc8d58a44d80e8220001cdc5.nii.gz/MD5E-s152265--ce07b2b7cc8d58a44d80e8220001cdc5.nii.gz

NYU_2/sub-0025106/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025106_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z5/gp/MD5E-s151937--f3d68d5a057682eff287bb650ad72dcd.nii.gz/MD5E-s151937--f3d68d5a057682eff287bb650ad72dcd.nii.gz

NYU_2/sub-0025106/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025106_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8Q/46/MD5E-s203556--c51bb76b7f2001d54f2fa47a22f8a945.nii.gz/MD5E-s203556--c51bb76b7f2001d54f2fa47a22f8a945.nii.gz

NYU_2/sub-0025106/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025106_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kj/K1/MD5E-s203084--a0e77ab7aa2642fb5840067b7760ed5c.nii.gz/MD5E-s203084--a0e77ab7aa2642fb5840067b7760ed5c.nii.gz

NYU_2/sub-0025106/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025106_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/g1/Zp/MD5E-s226269--1342d4c6eafcb5c44cda97bf22c4f1e5.nii.gz/MD5E-s226269--1342d4c6eafcb5c44cda97bf22c4f1e5.nii.gz

NYU_2/sub-0025106/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025106_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QM/zQ/MD5E-s225393--9ea429c1691f382d2e754bf876302824.nii.gz/MD5E-s225393--9ea429c1691f382d2e754bf876302824.nii.gz

NYU_2/sub-0025106/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025106_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/PF/p7/MD5E-s18877--b237ecb991e5c967f3830ff63a0d597b.nii.gz/MD5E-s18877--b237ecb991e5c967f3830ff63a0d597b.nii.gz

NYU_2/sub-0025106/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025106_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V2/kx/MD5E-s18694--8794c5019df67b2dc9a4fe3721f9196b.nii.gz/MD5E-s18694--8794c5019df67b2dc9a4fe3721f9196b.nii.gz

NYU_2/sub-0025106/ses-1/mri/aal3_sub-0025106_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3G/Fk/MD5E-s155093--3df76c8019e3e3cac3c9b5e778924a65.nii.gz/MD5E-s155093--3df76c8019e3e3cac3c9b5e778924a65.nii.gz

NYU_2/sub-0025106/ses-1/mri/aal3_sub-0025106_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GG/P8/MD5E-s154528--b3842703809b71fd61f1570366e4cfb3.nii.gz/MD5E-s154528--b3842703809b71fd61f1570366e4cfb3.nii.gz

NYU_2/sub-0025106/ses-1/mri/anatomy3_sub-0025106_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/9k/9x/MD5E-s108633--79ffc84e57a42af7e6198c2f729b6716.nii.gz/MD5E-s108633--79ffc84e57a42af7e6198c2f729b6716.nii.gz

NYU_2/sub-0025106/ses-1/mri/anatomy3_sub-0025106_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fp/98/MD5E-s108215--6a76e8a78c11ebb126998ce84e2e7ecc.nii.gz/MD5E-s108215--6a76e8a78c11ebb126998ce84e2e7ecc.nii.gz

NYU_2/sub-0025106/ses-1/mri/anon_misub-0025106_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4w/Wx/MD5E-s3229162--e8fa36409879c18bd9d817d64a3677ad.nii.gz/MD5E-s3229162--e8fa36409879c18bd9d817d64a3677ad.nii.gz

NYU_2/sub-0025106/ses-1/mri/anon_misub-0025106_ses-1_run-2_T1w.nii.gz

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+../../../../.git/annex/objects/m2/8V/MD5E-s3222414--a6655cc5172f0408ccf6871639456c02.nii.gz/MD5E-s3222414--a6655cc5172f0408ccf6871639456c02.nii.gz

NYU_2/sub-0025106/ses-1/mri/anon_msub-0025106_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025106/ses-1/mri/anon_msub-0025106_ses-1_run-2_T1w.nii.gz

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+../../../../.git/annex/objects/p2/v4/MD5E-s6801987--7b0c5fff611d3a164f6af13aae06f50a.nii.gz/MD5E-s6801987--7b0c5fff611d3a164f6af13aae06f50a.nii.gz

NYU_2/sub-0025106/ses-1/mri/cat_sub-0025106_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3K/zf/MD5E-s81847--8d719a1a3a88843883787b27e5bc6e91.nii.gz/MD5E-s81847--8d719a1a3a88843883787b27e5bc6e91.nii.gz

NYU_2/sub-0025106/ses-1/mri/cat_sub-0025106_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025106/ses-1/mri/cobra_sub-0025106_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025106/ses-1/mri/cobra_sub-0025106_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025106/ses-1/mri/hammers_sub-0025106_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/wX/WZ/MD5E-s118970--b8223ca611f725b763fe343c510ec0e5.nii.gz/MD5E-s118970--b8223ca611f725b763fe343c510ec0e5.nii.gz

NYU_2/sub-0025106/ses-1/mri/hammers_sub-0025106_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025106/ses-1/mri/ibsr_sub-0025106_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025106/ses-1/mri/ibsr_sub-0025106_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025106/ses-1/mri/it_sub-0025106_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025106/ses-1/mri/it_sub-0025106_ses-1_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025106/ses-1/mri/it_sub-0025106_ses-1_run-2_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025106/ses-1/mri/it_sub-0025106_ses-1_run-2_T1w_rigid_reorient.mat

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NYU_2/sub-0025106/ses-1/mri/iy_sub-0025106_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025106/ses-1/mri/iy_sub-0025106_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025106/ses-1/mri/julichbrain_sub-0025106_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025106/ses-1/mri/julichbrain_sub-0025106_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025106/ses-1/mri/lpba40_sub-0025106_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025106/ses-1/mri/lpba40_sub-0025106_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025106/ses-1/mri/m0wp1sub-0025106_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025106/ses-1/mri/m0wp1sub-0025106_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025106/ses-1/mri/m0wp2sub-0025106_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025106/ses-1/mri/m0wp2sub-0025106_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025106/ses-1/mri/m0wp3sub-0025106_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025106/ses-1/mri/m0wp3sub-0025106_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025106/ses-1/mri/mori_sub-0025106_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025106/ses-1/mri/mori_sub-0025106_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025106/ses-1/mri/mwp1sub-0025106_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025106/ses-1/mri/mwp1sub-0025106_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025106/ses-1/mri/mwp2sub-0025106_ses-1_run-1_T1w.nii.gz

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