[DATALAD RUNCMD] Compute SWU_4/sub-0025756/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025756/ses-2/anat/sub-0025756_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025756/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025756/ses-2/label/catROI_sub-0025756_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/97/fP/MD5E-s61237--796b5861c3d86d265c83e5140bfb5e68.mat/MD5E-s61237--796b5861c3d86d265c83e5140bfb5e68.mat

SWU_4/sub-0025756/ses-2/label/catROI_sub-0025756_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G8/13/MD5E-s189079--63907eb65821649d6a28e47602b979c8.xml/MD5E-s189079--63907eb65821649d6a28e47602b979c8.xml

SWU_4/sub-0025756/ses-2/label/catROIs_sub-0025756_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1v/VW/MD5E-s120132--a836f873dfe67f4feec3ced7335bb9bd.mat/MD5E-s120132--a836f873dfe67f4feec3ced7335bb9bd.mat

SWU_4/sub-0025756/ses-2/label/catROIs_sub-0025756_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6V/3K/MD5E-s332208--a2d1298594c97ae17a4bf8381f537028.xml/MD5E-s332208--a2d1298594c97ae17a4bf8381f537028.xml

SWU_4/sub-0025756/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025756_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025756/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QX/0f/MD5E-s151910--27537074c1db1258b6a7efa8e2a40f55.nii.gz/MD5E-s151910--27537074c1db1258b6a7efa8e2a40f55.nii.gz

SWU_4/sub-0025756/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025756_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025756/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xZ/FX/MD5E-s171372--227283f5a63cea9d2b4c8636a9fc5d28.nii.gz/MD5E-s171372--227283f5a63cea9d2b4c8636a9fc5d28.nii.gz

SWU_4/sub-0025756/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025756_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025756/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k5/gq/MD5E-s229758--98c02f86f7f681e4891c969c9903e459.nii.gz/MD5E-s229758--98c02f86f7f681e4891c969c9903e459.nii.gz

SWU_4/sub-0025756/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025756_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025756/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kX/wG/MD5E-s256733--7f79f71a4cf20c5c247ec3d2d45a257f.nii.gz/MD5E-s256733--7f79f71a4cf20c5c247ec3d2d45a257f.nii.gz

SWU_4/sub-0025756/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025756_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025756/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mv/7j/MD5E-s23847--78f7ff0cc8b8b5c5dad32554ccc52a91.nii.gz/MD5E-s23847--78f7ff0cc8b8b5c5dad32554ccc52a91.nii.gz

SWU_4/sub-0025756/ses-2/mri/aal3_sub-0025756_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025756/ses-2/mri/aal3_sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V5/z9/MD5E-s176296--2c03385a86f93de12515d0698d112385.nii.gz/MD5E-s176296--2c03385a86f93de12515d0698d112385.nii.gz

SWU_4/sub-0025756/ses-2/mri/anatomy3_sub-0025756_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025756/ses-2/mri/anatomy3_sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vp/90/MD5E-s126162--8868703d7f3a792a55e350f8271f88b0.nii.gz/MD5E-s126162--8868703d7f3a792a55e350f8271f88b0.nii.gz

SWU_4/sub-0025756/ses-2/mri/anon_misub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x6/5J/MD5E-s10780824--61d05f078b7d1bea49388826700e8042.nii.gz/MD5E-s10780824--61d05f078b7d1bea49388826700e8042.nii.gz

SWU_4/sub-0025756/ses-2/mri/anon_msub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W4/59/MD5E-s10313798--04c6c70f78a8e38054617e2e2f07b6e9.nii.gz/MD5E-s10313798--04c6c70f78a8e38054617e2e2f07b6e9.nii.gz

SWU_4/sub-0025756/ses-2/mri/cat_sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZV/p1/MD5E-s95187--b1f59792b1a527263d3c679f401f46e2.nii.gz/MD5E-s95187--b1f59792b1a527263d3c679f401f46e2.nii.gz

SWU_4/sub-0025756/ses-2/mri/cobra_sub-0025756_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025756/ses-2/mri/cobra_sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9Q/W4/MD5E-s48307--a3ed779990e3aab3f86d2e75dedd9cbb.nii.gz/MD5E-s48307--a3ed779990e3aab3f86d2e75dedd9cbb.nii.gz

SWU_4/sub-0025756/ses-2/mri/hammers_sub-0025756_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025756/ses-2/mri/hammers_sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zz/Xm/MD5E-s136092--94508fa53506969a3dc0363d3513bf79.nii.gz/MD5E-s136092--94508fa53506969a3dc0363d3513bf79.nii.gz

SWU_4/sub-0025756/ses-2/mri/ibsr_sub-0025756_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025756/ses-2/mri/ibsr_sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W3/70/MD5E-s145786--eaa09fe978813b8bf45941db699caa1a.nii.gz/MD5E-s145786--eaa09fe978813b8bf45941db699caa1a.nii.gz

SWU_4/sub-0025756/ses-2/mri/it_sub-0025756_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FG/px/MD5E-s282--410944c186eea7d4911a0646daa3e494.mat/MD5E-s282--410944c186eea7d4911a0646daa3e494.mat

SWU_4/sub-0025756/ses-2/mri/it_sub-0025756_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7m/fF/MD5E-s283--24a7ae70a18562336a3753041f07b6f8.mat/MD5E-s283--24a7ae70a18562336a3753041f07b6f8.mat

SWU_4/sub-0025756/ses-2/mri/iy_sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xm/Z2/MD5E-s41225648--6858894b3117fe2e41b5a6b2af2986d9.nii.gz/MD5E-s41225648--6858894b3117fe2e41b5a6b2af2986d9.nii.gz

SWU_4/sub-0025756/ses-2/mri/julichbrain_sub-0025756_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025756/ses-2/mri/julichbrain_sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mz/Mf/MD5E-s182763--0ef83e5aa715fb80929fdad79de4d0bd.nii.gz/MD5E-s182763--0ef83e5aa715fb80929fdad79de4d0bd.nii.gz

SWU_4/sub-0025756/ses-2/mri/lpba40_sub-0025756_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025756/ses-2/mri/lpba40_sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7Z/44/MD5E-s134489--bd031b352170b0a04c27d170f3360111.nii.gz/MD5E-s134489--bd031b352170b0a04c27d170f3360111.nii.gz

SWU_4/sub-0025756/ses-2/mri/m0wp1sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9j/g5/MD5E-s2579885--cb2187fce8698aa1a776237b53873cc4.nii.gz/MD5E-s2579885--cb2187fce8698aa1a776237b53873cc4.nii.gz

SWU_4/sub-0025756/ses-2/mri/m0wp2sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wp/X3/MD5E-s2310362--d2a2304ea25049213c81b6349de08496.nii.gz/MD5E-s2310362--d2a2304ea25049213c81b6349de08496.nii.gz

SWU_4/sub-0025756/ses-2/mri/m0wp3sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8W/JP/MD5E-s2553665--8873a9e4adc5cfd314c2fee13dc2d41e.nii.gz/MD5E-s2553665--8873a9e4adc5cfd314c2fee13dc2d41e.nii.gz

SWU_4/sub-0025756/ses-2/mri/mori_sub-0025756_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025756/ses-2/mri/mori_sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7m/zw/MD5E-s159150--61421c8092d703e9928b1fb515997b7e.nii.gz/MD5E-s159150--61421c8092d703e9928b1fb515997b7e.nii.gz

SWU_4/sub-0025756/ses-2/mri/mwp1sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w8/Xg/MD5E-s2590295--3e169d3358ffa8f7bdecff03383434af.nii.gz/MD5E-s2590295--3e169d3358ffa8f7bdecff03383434af.nii.gz

SWU_4/sub-0025756/ses-2/mri/mwp2sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QJ/JJ/MD5E-s2316400--36f90e05812b5d52d7717f854591984f.nii.gz/MD5E-s2316400--36f90e05812b5d52d7717f854591984f.nii.gz

SWU_4/sub-0025756/ses-2/mri/mwp3sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mK/xj/MD5E-s2551266--dce4efcafc163902795342afc1d79b15.nii.gz/MD5E-s2551266--dce4efcafc163902795342afc1d79b15.nii.gz

SWU_4/sub-0025756/ses-2/mri/neuromorphometrics_sub-0025756_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025756/ses-2/mri/neuromorphometrics_sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3X/G0/MD5E-s185040--8e9bb7b568739c5719441a973fb8a6b8.nii.gz/MD5E-s185040--8e9bb7b568739c5719441a973fb8a6b8.nii.gz

SWU_4/sub-0025756/ses-2/mri/p0sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/28/0z/MD5E-s591149--909859fda4cf0bad026bf72753ba432e.nii.gz/MD5E-s591149--909859fda4cf0bad026bf72753ba432e.nii.gz

SWU_4/sub-0025756/ses-2/mri/p1sub-0025756_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025756/ses-2/mri/p2sub-0025756_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/f1/x1/MD5E-s416791--502a500d345d40ea26d02e3f6aa4873d.nii.gz/MD5E-s416791--502a500d345d40ea26d02e3f6aa4873d.nii.gz

SWU_4/sub-0025756/ses-2/mri/p3sub-0025756_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025756/ses-2/mri/rp1sub-0025756_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025756/ses-2/mri/rp2sub-0025756_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025756/ses-2/mri/rp3sub-0025756_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025756/ses-2/mri/t_sub-0025756_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025756/ses-2/mri/t_sub-0025756_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WJ/PM/MD5E-s283--99ac96536425fb22e269e1fcea5bfa80.mat/MD5E-s283--99ac96536425fb22e269e1fcea5bfa80.mat

SWU_4/sub-0025756/ses-2/mri/thalamus_sub-0025756_ses-2_run-1_T1w.csv

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SWU_4/sub-0025756/ses-2/mri/thalamus_sub-0025756_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025756/ses-2/mri/wj_sub-0025756_ses-2_run-1_T1w.nii.gz

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