[DATALAD RUNCMD] Compute BNU_1/sub-0025908/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025908/ses-2/anat/sub-0025908_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025908/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025908/ses-2/label/catROI_sub-0025908_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GM/1g/MD5E-s58161--ca44855ab2ed6df0f10086a55b137e57.mat/MD5E-s58161--ca44855ab2ed6df0f10086a55b137e57.mat

BNU_1/sub-0025908/ses-2/label/catROI_sub-0025908_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f5/00/MD5E-s188676--1613e62714253cf5b15731f1c7c9505e.xml/MD5E-s188676--1613e62714253cf5b15731f1c7c9505e.xml

BNU_1/sub-0025908/ses-2/label/catROIs_sub-0025908_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9J/7M/MD5E-s120117--8aeb7bece6b903e010e8e93146ea429f.mat/MD5E-s120117--8aeb7bece6b903e010e8e93146ea429f.mat

BNU_1/sub-0025908/ses-2/label/catROIs_sub-0025908_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x1/QM/MD5E-s332080--7e5dca7448a352cbf84b758c14f97c78.xml/MD5E-s332080--7e5dca7448a352cbf84b758c14f97c78.xml

BNU_1/sub-0025908/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025908_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025908/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k0/Xq/MD5E-s153655--bd35fb10f5d1c311ac9adf86c9adeffa.nii.gz/MD5E-s153655--bd35fb10f5d1c311ac9adf86c9adeffa.nii.gz

BNU_1/sub-0025908/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025908_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025908/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gm/gZ/MD5E-s173486--b52c36b85b0218c4ba727494d867efbd.nii.gz/MD5E-s173486--b52c36b85b0218c4ba727494d867efbd.nii.gz

BNU_1/sub-0025908/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025908_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025908/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mx/Xz/MD5E-s232448--09432879e9f7f1bf8376f3ac7a44fbfa.nii.gz/MD5E-s232448--09432879e9f7f1bf8376f3ac7a44fbfa.nii.gz

BNU_1/sub-0025908/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025908_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025908/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m0/qm/MD5E-s259976--ac43da611080ae000af9c436b31558e2.nii.gz/MD5E-s259976--ac43da611080ae000af9c436b31558e2.nii.gz

BNU_1/sub-0025908/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025908_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025908/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v5/jj/MD5E-s21188--4c70947fa35af65c06637e19dc1e549c.nii.gz/MD5E-s21188--4c70947fa35af65c06637e19dc1e549c.nii.gz

BNU_1/sub-0025908/ses-2/mri/aal3_sub-0025908_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025908/ses-2/mri/aal3_sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jM/P0/MD5E-s177585--b3c51356cdbe6b6fc1896cb9f2d1a734.nii.gz/MD5E-s177585--b3c51356cdbe6b6fc1896cb9f2d1a734.nii.gz

BNU_1/sub-0025908/ses-2/mri/anatomy3_sub-0025908_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025908/ses-2/mri/anatomy3_sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J5/Pf/MD5E-s124492--c76d9984d9509bc57fcd82709eebea89.nii.gz/MD5E-s124492--c76d9984d9509bc57fcd82709eebea89.nii.gz

BNU_1/sub-0025908/ses-2/mri/anon_misub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kf/pK/MD5E-s4384278--3898ab2c4e6ac7d7d9069a673fc00dfe.nii.gz/MD5E-s4384278--3898ab2c4e6ac7d7d9069a673fc00dfe.nii.gz

BNU_1/sub-0025908/ses-2/mri/anon_msub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z8/3Z/MD5E-s10573560--730188fe2fc7b27b2ad30505f726057a.nii.gz/MD5E-s10573560--730188fe2fc7b27b2ad30505f726057a.nii.gz

BNU_1/sub-0025908/ses-2/mri/cat_sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K8/p3/MD5E-s96622--399c4fc551c27ca5061976930030b6f3.nii.gz/MD5E-s96622--399c4fc551c27ca5061976930030b6f3.nii.gz

BNU_1/sub-0025908/ses-2/mri/cobra_sub-0025908_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025908/ses-2/mri/cobra_sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/72/0q/MD5E-s43835--e0b74982d4544e97715592f7e9664de7.nii.gz/MD5E-s43835--e0b74982d4544e97715592f7e9664de7.nii.gz

BNU_1/sub-0025908/ses-2/mri/hammers_sub-0025908_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025908/ses-2/mri/hammers_sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fv/08/MD5E-s139006--05b5cb3b99b95169d858b0de20de4cc7.nii.gz/MD5E-s139006--05b5cb3b99b95169d858b0de20de4cc7.nii.gz

BNU_1/sub-0025908/ses-2/mri/ibsr_sub-0025908_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025908/ses-2/mri/ibsr_sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kz/Ww/MD5E-s147336--634a574677846c1885e3d38c4a3fd3f6.nii.gz/MD5E-s147336--634a574677846c1885e3d38c4a3fd3f6.nii.gz

BNU_1/sub-0025908/ses-2/mri/it_sub-0025908_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MW/jw/MD5E-s282--a297720aec00b34d762432aa318f3ff9.mat/MD5E-s282--a297720aec00b34d762432aa318f3ff9.mat

BNU_1/sub-0025908/ses-2/mri/it_sub-0025908_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5M/MV/MD5E-s283--df76abb6666df849deaa63c98369539b.mat/MD5E-s283--df76abb6666df849deaa63c98369539b.mat

BNU_1/sub-0025908/ses-2/mri/iy_sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w3/g9/MD5E-s38184228--3e7e0a13c9b3ef4cb3df66b477877678.nii.gz/MD5E-s38184228--3e7e0a13c9b3ef4cb3df66b477877678.nii.gz

BNU_1/sub-0025908/ses-2/mri/julichbrain_sub-0025908_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025908/ses-2/mri/julichbrain_sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JQ/mm/MD5E-s185362--8b4db1c96f86eff6d17c14636f6518d1.nii.gz/MD5E-s185362--8b4db1c96f86eff6d17c14636f6518d1.nii.gz

BNU_1/sub-0025908/ses-2/mri/lpba40_sub-0025908_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025908/ses-2/mri/lpba40_sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G0/k6/MD5E-s137436--ba7c69481900951b7ba98a6674d0aa58.nii.gz/MD5E-s137436--ba7c69481900951b7ba98a6674d0aa58.nii.gz

BNU_1/sub-0025908/ses-2/mri/m0wp1sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vF/Qj/MD5E-s2590869--2631a17206abf26bb241b9c0da01b3cf.nii.gz/MD5E-s2590869--2631a17206abf26bb241b9c0da01b3cf.nii.gz

BNU_1/sub-0025908/ses-2/mri/m0wp2sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kg/FV/MD5E-s2299925--d1c42046aac06ff7041a834ac27dc0e5.nii.gz/MD5E-s2299925--d1c42046aac06ff7041a834ac27dc0e5.nii.gz

BNU_1/sub-0025908/ses-2/mri/m0wp3sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/pX/MD5E-s2483113--da87725a8502b184ee0e48b8866959e8.nii.gz/MD5E-s2483113--da87725a8502b184ee0e48b8866959e8.nii.gz

BNU_1/sub-0025908/ses-2/mri/mori_sub-0025908_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025908/ses-2/mri/mori_sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QK/qJ/MD5E-s162699--4e8cc8d634534e8adebf1f7889923670.nii.gz/MD5E-s162699--4e8cc8d634534e8adebf1f7889923670.nii.gz

BNU_1/sub-0025908/ses-2/mri/mwp1sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6p/Jv/MD5E-s2590558--fda3009991286ea2e10fdd5984356f1f.nii.gz/MD5E-s2590558--fda3009991286ea2e10fdd5984356f1f.nii.gz

BNU_1/sub-0025908/ses-2/mri/mwp2sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KG/X3/MD5E-s2295628--1562e835aabc0fe2bebc4b6ea8c915e4.nii.gz/MD5E-s2295628--1562e835aabc0fe2bebc4b6ea8c915e4.nii.gz

BNU_1/sub-0025908/ses-2/mri/mwp3sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3p/9v/MD5E-s2479690--defa5ad7dd6dcbe7f127406ef5813ef3.nii.gz/MD5E-s2479690--defa5ad7dd6dcbe7f127406ef5813ef3.nii.gz

BNU_1/sub-0025908/ses-2/mri/neuromorphometrics_sub-0025908_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025908/ses-2/mri/neuromorphometrics_sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kw/2M/MD5E-s189669--6f2750d093cfb78cd86b2b0683c4b6f0.nii.gz/MD5E-s189669--6f2750d093cfb78cd86b2b0683c4b6f0.nii.gz

BNU_1/sub-0025908/ses-2/mri/p0sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WP/qW/MD5E-s825865--68a14ca289bdd39d671d974a7b62a89b.nii.gz/MD5E-s825865--68a14ca289bdd39d671d974a7b62a89b.nii.gz

BNU_1/sub-0025908/ses-2/mri/p1sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mp/qV/MD5E-s846417--22b9df78c1eb825b7969fb173efd9d38.nii.gz/MD5E-s846417--22b9df78c1eb825b7969fb173efd9d38.nii.gz

BNU_1/sub-0025908/ses-2/mri/p2sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fz/pj/MD5E-s576182--bf5fdb77a56c00a1acc8736efe5ef7c5.nii.gz/MD5E-s576182--bf5fdb77a56c00a1acc8736efe5ef7c5.nii.gz

BNU_1/sub-0025908/ses-2/mri/p3sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vq/J2/MD5E-s507459--2baffb4299237e7d40d5c480b4ad4949.nii.gz/MD5E-s507459--2baffb4299237e7d40d5c480b4ad4949.nii.gz

BNU_1/sub-0025908/ses-2/mri/rp1sub-0025908_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wZ/QF/MD5E-s447556--bd06f826a78dbaa68ff63f57d96c1374.nii.gz/MD5E-s447556--bd06f826a78dbaa68ff63f57d96c1374.nii.gz

BNU_1/sub-0025908/ses-2/mri/rp2sub-0025908_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025908/ses-2/mri/rp3sub-0025908_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vm/2j/MD5E-s274015--c2eaf9a8f10c9def452d9277c426db17.nii.gz/MD5E-s274015--c2eaf9a8f10c9def452d9277c426db17.nii.gz

BNU_1/sub-0025908/ses-2/mri/t_sub-0025908_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fg/3M/MD5E-s283--933a2df2c0bb54129d520c7f33496a0f.mat/MD5E-s283--933a2df2c0bb54129d520c7f33496a0f.mat

BNU_1/sub-0025908/ses-2/mri/t_sub-0025908_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0f/1M/MD5E-s283--f648b13cff0c6ef9bb8ab2c102197462.mat/MD5E-s283--f648b13cff0c6ef9bb8ab2c102197462.mat

BNU_1/sub-0025908/ses-2/mri/thalamus_sub-0025908_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025908/ses-2/mri/thalamus_sub-0025908_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KV/15/MD5E-s14074--fe3d922fce1cac052aebaadb6d674c6f.nii.gz/MD5E-s14074--fe3d922fce1cac052aebaadb6d674c6f.nii.gz

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