[DATALAD RUNCMD] Compute SWU_2/sub-0027189/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_2/sub-0027189/ses-1/anat/sub-0027189_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_2/sub-0027189/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_2/sub-0027189/ses-1/label/catROI_sub-0027189_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G8/Xp/MD5E-s61189--6d85ef86d7567dd8443a9af79a6ea62a.mat/MD5E-s61189--6d85ef86d7567dd8443a9af79a6ea62a.mat

SWU_2/sub-0027189/ses-1/label/catROI_sub-0027189_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x6/w0/MD5E-s189064--cd768369056f721f31eb8d7cd3d12dc3.xml/MD5E-s189064--cd768369056f721f31eb8d7cd3d12dc3.xml

SWU_2/sub-0027189/ses-1/label/catROIs_sub-0027189_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f8/M9/MD5E-s120096--56e24a4041f00bf51254f2d27fed431f.mat/MD5E-s120096--56e24a4041f00bf51254f2d27fed431f.mat

SWU_2/sub-0027189/ses-1/label/catROIs_sub-0027189_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qm/8m/MD5E-s332126--e6dadcb5fcc82d500a888df51a53f96b.xml/MD5E-s332126--e6dadcb5fcc82d500a888df51a53f96b.xml

SWU_2/sub-0027189/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027189_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_2/sub-0027189/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/20/xG/MD5E-s160464--5347da09db268945544badb7eac26ef2.nii.gz/MD5E-s160464--5347da09db268945544badb7eac26ef2.nii.gz

SWU_2/sub-0027189/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027189_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_2/sub-0027189/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/gf/MD5E-s179005--36d07a2f810241da9d1f111905828a64.nii.gz/MD5E-s179005--36d07a2f810241da9d1f111905828a64.nii.gz

SWU_2/sub-0027189/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027189_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_2/sub-0027189/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/24/w5/MD5E-s242565--845b8db67ba689aac6d5b2ceaaf61bdf.nii.gz/MD5E-s242565--845b8db67ba689aac6d5b2ceaaf61bdf.nii.gz

SWU_2/sub-0027189/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027189_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_2/sub-0027189/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K5/F4/MD5E-s269680--504b501052c6ed91228ee53303ccd79b.nii.gz/MD5E-s269680--504b501052c6ed91228ee53303ccd79b.nii.gz

SWU_2/sub-0027189/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027189_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_2/sub-0027189/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4Q/p0/MD5E-s24703--ee507a989f7fb7a53f62fada3756081d.nii.gz/MD5E-s24703--ee507a989f7fb7a53f62fada3756081d.nii.gz

SWU_2/sub-0027189/ses-1/mri/aal3_sub-0027189_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_2/sub-0027189/ses-1/mri/aal3_sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M9/JF/MD5E-s181268--9801883686669aee94294df027e73cf4.nii.gz/MD5E-s181268--9801883686669aee94294df027e73cf4.nii.gz

SWU_2/sub-0027189/ses-1/mri/anatomy3_sub-0027189_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_2/sub-0027189/ses-1/mri/anatomy3_sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4v/KZ/MD5E-s131967--95aeffeee73ed53239f11b4fffaea448.nii.gz/MD5E-s131967--95aeffeee73ed53239f11b4fffaea448.nii.gz

SWU_2/sub-0027189/ses-1/mri/anon_misub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1V/gM/MD5E-s7748540--f726574a6ed8727b26ac3ba139b6b501.nii.gz/MD5E-s7748540--f726574a6ed8727b26ac3ba139b6b501.nii.gz

SWU_2/sub-0027189/ses-1/mri/anon_msub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wK/3V/MD5E-s7375494--bb0f020e271256170063dc307c2eec15.nii.gz/MD5E-s7375494--bb0f020e271256170063dc307c2eec15.nii.gz

SWU_2/sub-0027189/ses-1/mri/cat_sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/24/WZ/MD5E-s96674--2e0b8b630878f02039be10a773f8be79.nii.gz/MD5E-s96674--2e0b8b630878f02039be10a773f8be79.nii.gz

SWU_2/sub-0027189/ses-1/mri/cobra_sub-0027189_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_2/sub-0027189/ses-1/mri/cobra_sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/90/Qp/MD5E-s46888--54c959367f07eb4553a86879c0f745a2.nii.gz/MD5E-s46888--54c959367f07eb4553a86879c0f745a2.nii.gz

SWU_2/sub-0027189/ses-1/mri/hammers_sub-0027189_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_2/sub-0027189/ses-1/mri/hammers_sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vQ/F6/MD5E-s143890--a7077be4135c4f8daf2487e4390f5801.nii.gz/MD5E-s143890--a7077be4135c4f8daf2487e4390f5801.nii.gz

SWU_2/sub-0027189/ses-1/mri/ibsr_sub-0027189_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_2/sub-0027189/ses-1/mri/ibsr_sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W5/ff/MD5E-s151692--959a11ad3b629bb136284761d7d81fc4.nii.gz/MD5E-s151692--959a11ad3b629bb136284761d7d81fc4.nii.gz

SWU_2/sub-0027189/ses-1/mri/it_sub-0027189_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mZ/km/MD5E-s284--d07d0ac869fa20fa24bb8300400739e0.mat/MD5E-s284--d07d0ac869fa20fa24bb8300400739e0.mat

SWU_2/sub-0027189/ses-1/mri/it_sub-0027189_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0w/X9/MD5E-s283--76168137ea2d25fe2d4a18802c8e247d.mat/MD5E-s283--76168137ea2d25fe2d4a18802c8e247d.mat

SWU_2/sub-0027189/ses-1/mri/iy_sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0M/vK/MD5E-s44082098--8fd40550344a4c4ab4f87a9cb78cf9ce.nii.gz/MD5E-s44082098--8fd40550344a4c4ab4f87a9cb78cf9ce.nii.gz

SWU_2/sub-0027189/ses-1/mri/julichbrain_sub-0027189_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_2/sub-0027189/ses-1/mri/julichbrain_sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J3/wQ/MD5E-s192732--353fb15c447f989a505735105e1f086f.nii.gz/MD5E-s192732--353fb15c447f989a505735105e1f086f.nii.gz

SWU_2/sub-0027189/ses-1/mri/lpba40_sub-0027189_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_2/sub-0027189/ses-1/mri/lpba40_sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3J/PV/MD5E-s141383--29cbb9cc8c8e6f8a35c92ba42875a46a.nii.gz/MD5E-s141383--29cbb9cc8c8e6f8a35c92ba42875a46a.nii.gz

SWU_2/sub-0027189/ses-1/mri/m0wp1sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027189/ses-1/mri/m0wp2sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F8/xF/MD5E-s2307406--5c47321e47c9f8dcce697a891a0dcc5d.nii.gz/MD5E-s2307406--5c47321e47c9f8dcce697a891a0dcc5d.nii.gz

SWU_2/sub-0027189/ses-1/mri/m0wp3sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7k/gk/MD5E-s2580607--16e4114b142b84174611c24daf0041df.nii.gz/MD5E-s2580607--16e4114b142b84174611c24daf0041df.nii.gz

SWU_2/sub-0027189/ses-1/mri/mori_sub-0027189_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_2/sub-0027189/ses-1/mri/mori_sub-0027189_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027189/ses-1/mri/mwp1sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J1/2k/MD5E-s2594643--c95beff63ccff49ddd75317ad5ea57cf.nii.gz/MD5E-s2594643--c95beff63ccff49ddd75317ad5ea57cf.nii.gz

SWU_2/sub-0027189/ses-1/mri/mwp2sub-0027189_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027189/ses-1/mri/mwp3sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027189/ses-1/mri/neuromorphometrics_sub-0027189_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_2/sub-0027189/ses-1/mri/neuromorphometrics_sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027189/ses-1/mri/p0sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027189/ses-1/mri/p1sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027189/ses-1/mri/p2sub-0027189_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027189/ses-1/mri/p3sub-0027189_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027189/ses-1/mri/rp1sub-0027189_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027189/ses-1/mri/rp2sub-0027189_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027189/ses-1/mri/rp3sub-0027189_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027189/ses-1/mri/t_sub-0027189_ses-1_run-1_T1w_affine_reorient.mat

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SWU_2/sub-0027189/ses-1/mri/t_sub-0027189_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_2/sub-0027189/ses-1/mri/thalamus_sub-0027189_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_2/sub-0027189/ses-1/mri/thalamus_sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027189/ses-1/mri/wj_sub-0027189_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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