[DATALAD RUNCMD] Compute IACAS/sub-0025461/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025461/ses-2/anat/sub-0025461_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025461/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025461/ses-2/label/catROI_sub-0025461_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jf/p2/MD5E-s58029--f738ddc6895088fee336beacd39a8ca3.mat/MD5E-s58029--f738ddc6895088fee336beacd39a8ca3.mat

IACAS/sub-0025461/ses-2/label/catROI_sub-0025461_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kx/v0/MD5E-s188668--72b273876b9b682b65c43081fa1a655c.xml/MD5E-s188668--72b273876b9b682b65c43081fa1a655c.xml

IACAS/sub-0025461/ses-2/label/catROIs_sub-0025461_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8z/v5/MD5E-s120196--47c86ac4625069ff7a0896213c562c0f.mat/MD5E-s120196--47c86ac4625069ff7a0896213c562c0f.mat

IACAS/sub-0025461/ses-2/label/catROIs_sub-0025461_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1G/Wg/MD5E-s332124--2754786df2d2de7d66cea1ab531e5ad2.xml/MD5E-s332124--2754786df2d2de7d66cea1ab531e5ad2.xml

IACAS/sub-0025461/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025461_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025461/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025461_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4k/j0/MD5E-s173886--a5bd1f4dbce29cb871015bb2d5aee20e.nii.gz/MD5E-s173886--a5bd1f4dbce29cb871015bb2d5aee20e.nii.gz

IACAS/sub-0025461/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025461_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025461/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025461_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/ZF/MD5E-s194591--cf116cb5899182945a79720c30b75cb4.nii.gz/MD5E-s194591--cf116cb5899182945a79720c30b75cb4.nii.gz

IACAS/sub-0025461/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025461_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025461/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025461_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k4/28/MD5E-s261003--3fe758f694d699690e48c9421f921caa.nii.gz/MD5E-s261003--3fe758f694d699690e48c9421f921caa.nii.gz

IACAS/sub-0025461/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025461_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025461/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025461_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jm/8z/MD5E-s289921--b4a893f9de970efbffd8747c6c3860dd.nii.gz/MD5E-s289921--b4a893f9de970efbffd8747c6c3860dd.nii.gz

IACAS/sub-0025461/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025461_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025461/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025461_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MM/PZ/MD5E-s27307--0f9146fbe933f467dc71873bb27f8464.nii.gz/MD5E-s27307--0f9146fbe933f467dc71873bb27f8464.nii.gz

IACAS/sub-0025461/ses-2/mri/aal3_sub-0025461_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IACAS/sub-0025461/ses-2/mri/aal3_sub-0025461_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3v/vp/MD5E-s195197--b669d2e9338fe54b7724c95de7eb1638.nii.gz/MD5E-s195197--b669d2e9338fe54b7724c95de7eb1638.nii.gz

IACAS/sub-0025461/ses-2/mri/anatomy3_sub-0025461_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025461/ses-2/mri/anatomy3_sub-0025461_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jG/06/MD5E-s144298--57b43ea761faa81f56c06f5fd03e183a.nii.gz/MD5E-s144298--57b43ea761faa81f56c06f5fd03e183a.nii.gz

IACAS/sub-0025461/ses-2/mri/anon_misub-0025461_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gg/KZ/MD5E-s9737004--a1a05df43c97246634db5d2dbda1781c.nii.gz/MD5E-s9737004--a1a05df43c97246634db5d2dbda1781c.nii.gz

IACAS/sub-0025461/ses-2/mri/anon_msub-0025461_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7w/q7/MD5E-s11068682--57c2c49d195353db5140669890313bc1.nii.gz/MD5E-s11068682--57c2c49d195353db5140669890313bc1.nii.gz

IACAS/sub-0025461/ses-2/mri/cat_sub-0025461_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9w/68/MD5E-s108418--85f27dec55ccb89bdfcf7ec6ef930f5c.nii.gz/MD5E-s108418--85f27dec55ccb89bdfcf7ec6ef930f5c.nii.gz

IACAS/sub-0025461/ses-2/mri/cobra_sub-0025461_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025461/ses-2/mri/cobra_sub-0025461_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XQ/Q2/MD5E-s50235--b4281104022f06fbeb99fccd96bbbd25.nii.gz/MD5E-s50235--b4281104022f06fbeb99fccd96bbbd25.nii.gz

IACAS/sub-0025461/ses-2/mri/hammers_sub-0025461_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025461/ses-2/mri/hammers_sub-0025461_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v8/P5/MD5E-s155721--9af06df422de8e115806bc2f1f6b04e0.nii.gz/MD5E-s155721--9af06df422de8e115806bc2f1f6b04e0.nii.gz

IACAS/sub-0025461/ses-2/mri/ibsr_sub-0025461_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025461/ses-2/mri/ibsr_sub-0025461_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QJ/xF/MD5E-s163829--838847552072496228bc4ac75b64a4bc.nii.gz/MD5E-s163829--838847552072496228bc4ac75b64a4bc.nii.gz

IACAS/sub-0025461/ses-2/mri/it_sub-0025461_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fz/35/MD5E-s282--d3cefb9acc466a099f85a879393db223.mat/MD5E-s282--d3cefb9acc466a099f85a879393db223.mat

IACAS/sub-0025461/ses-2/mri/it_sub-0025461_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qk/5w/MD5E-s282--d757715ef15e6fdd7609293acbae823a.mat/MD5E-s282--d757715ef15e6fdd7609293acbae823a.mat

IACAS/sub-0025461/ses-2/mri/iy_sub-0025461_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FG/8f/MD5E-s48662624--dec8b22f189ef61001dc61a3da80b8de.nii.gz/MD5E-s48662624--dec8b22f189ef61001dc61a3da80b8de.nii.gz

IACAS/sub-0025461/ses-2/mri/julichbrain_sub-0025461_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

IACAS/sub-0025461/ses-2/mri/julichbrain_sub-0025461_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025461/ses-2/mri/lpba40_sub-0025461_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025461/ses-2/mri/lpba40_sub-0025461_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025461/ses-2/mri/m0wp1sub-0025461_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025461/ses-2/mri/m0wp2sub-0025461_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025461/ses-2/mri/m0wp3sub-0025461_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025461/ses-2/mri/mori_sub-0025461_ses-2_run-1_T1w.csv

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IACAS/sub-0025461/ses-2/mri/mori_sub-0025461_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025461/ses-2/mri/mwp1sub-0025461_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025461/ses-2/mri/mwp2sub-0025461_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025461/ses-2/mri/mwp3sub-0025461_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025461/ses-2/mri/neuromorphometrics_sub-0025461_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025461/ses-2/mri/neuromorphometrics_sub-0025461_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025461/ses-2/mri/p0sub-0025461_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025461/ses-2/mri/p1sub-0025461_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025461/ses-2/mri/p2sub-0025461_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025461/ses-2/mri/p3sub-0025461_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025461/ses-2/mri/rp1sub-0025461_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025461/ses-2/mri/rp2sub-0025461_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025461/ses-2/mri/rp3sub-0025461_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025461/ses-2/mri/t_sub-0025461_ses-2_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025461/ses-2/mri/t_sub-0025461_ses-2_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025461/ses-2/mri/thalamus_sub-0025461_ses-2_run-1_T1w.csv

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IACAS/sub-0025461/ses-2/mri/thalamus_sub-0025461_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025461/ses-2/mri/wj_sub-0025461_ses-2_run-1_T1w.nii.gz

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