[DATALAD RUNCMD] Compute SWU_4/sub-0025664/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025664/ses-1/anat/sub-0025664_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025664/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025664/ses-1/label/catROI_sub-0025664_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jx/pV/MD5E-s57827--f0b741b893582804568587e1ef4c1197.mat/MD5E-s57827--f0b741b893582804568587e1ef4c1197.mat

SWU_4/sub-0025664/ses-1/label/catROI_sub-0025664_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qz/J2/MD5E-s188540--a8bc817aa903521903c7a3ff1d07f650.xml/MD5E-s188540--a8bc817aa903521903c7a3ff1d07f650.xml

SWU_4/sub-0025664/ses-1/label/catROIs_sub-0025664_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0J/zg/MD5E-s120060--5bf975e625083015eb3fbfdedc9eedef.mat/MD5E-s120060--5bf975e625083015eb3fbfdedc9eedef.mat

SWU_4/sub-0025664/ses-1/label/catROIs_sub-0025664_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X2/Fp/MD5E-s332115--a92f990b12c605ff7443464e3cdb44e0.xml/MD5E-s332115--a92f990b12c605ff7443464e3cdb44e0.xml

SWU_4/sub-0025664/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025664_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025664/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZW/XK/MD5E-s169258--01166ec33f8ab7929359769e4d54fdcd.nii.gz/MD5E-s169258--01166ec33f8ab7929359769e4d54fdcd.nii.gz

SWU_4/sub-0025664/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025664_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025664/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0M/5g/MD5E-s188614--e2471f3ee5bb5158844c363cf7fcb35b.nii.gz/MD5E-s188614--e2471f3ee5bb5158844c363cf7fcb35b.nii.gz

SWU_4/sub-0025664/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025664_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025664/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pj/zW/MD5E-s254430--f7a0de564472f60a557e9dd96015f5c1.nii.gz/MD5E-s254430--f7a0de564472f60a557e9dd96015f5c1.nii.gz

SWU_4/sub-0025664/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025664_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025664/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7J/0z/MD5E-s282382--1afc5c80cda175a7a5edaa1161d994d2.nii.gz/MD5E-s282382--1afc5c80cda175a7a5edaa1161d994d2.nii.gz

SWU_4/sub-0025664/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025664_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025664/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M1/W3/MD5E-s25032--e1aeaedeb2c80dd744c3919d66a21422.nii.gz/MD5E-s25032--e1aeaedeb2c80dd744c3919d66a21422.nii.gz

SWU_4/sub-0025664/ses-1/mri/aal3_sub-0025664_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025664/ses-1/mri/aal3_sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GV/FW/MD5E-s190331--a34e7919a6ff551933e73c06e45132a5.nii.gz/MD5E-s190331--a34e7919a6ff551933e73c06e45132a5.nii.gz

SWU_4/sub-0025664/ses-1/mri/anatomy3_sub-0025664_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025664/ses-1/mri/anatomy3_sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kX/q3/MD5E-s138524--4c422a456a065ce199df18eb4a539c73.nii.gz/MD5E-s138524--4c422a456a065ce199df18eb4a539c73.nii.gz

SWU_4/sub-0025664/ses-1/mri/anon_misub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fK/Z3/MD5E-s9702513--5258912ca8e4bc03bfbf14ba4491d09f.nii.gz/MD5E-s9702513--5258912ca8e4bc03bfbf14ba4491d09f.nii.gz

SWU_4/sub-0025664/ses-1/mri/anon_msub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vk/Wm/MD5E-s11095399--b5e3258d70960f410047d291a6e2ac53.nii.gz/MD5E-s11095399--b5e3258d70960f410047d291a6e2ac53.nii.gz

SWU_4/sub-0025664/ses-1/mri/cat_sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2f/V0/MD5E-s103650--c745d98b715b6f15d685d988059d2638.nii.gz/MD5E-s103650--c745d98b715b6f15d685d988059d2638.nii.gz

SWU_4/sub-0025664/ses-1/mri/cobra_sub-0025664_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025664/ses-1/mri/cobra_sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1V/09/MD5E-s49181--e527868e62812a665d113e69d84ab40b.nii.gz/MD5E-s49181--e527868e62812a665d113e69d84ab40b.nii.gz

SWU_4/sub-0025664/ses-1/mri/hammers_sub-0025664_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025664/ses-1/mri/hammers_sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pv/Mx/MD5E-s149345--ca908cfa6ee2fa0fd0ab2d0845698110.nii.gz/MD5E-s149345--ca908cfa6ee2fa0fd0ab2d0845698110.nii.gz

SWU_4/sub-0025664/ses-1/mri/ibsr_sub-0025664_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025664/ses-1/mri/ibsr_sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pw/ZP/MD5E-s158941--fa55f164f679f2bcc576f3c53cb1e3c8.nii.gz/MD5E-s158941--fa55f164f679f2bcc576f3c53cb1e3c8.nii.gz

SWU_4/sub-0025664/ses-1/mri/it_sub-0025664_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6q/22/MD5E-s283--3135a81e2aada6cc7ba8416ca432dc0f.mat/MD5E-s283--3135a81e2aada6cc7ba8416ca432dc0f.mat

SWU_4/sub-0025664/ses-1/mri/it_sub-0025664_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P2/ZQ/MD5E-s283--035243705b63f0d56c2f76d63841ffb6.mat/MD5E-s283--035243705b63f0d56c2f76d63841ffb6.mat

SWU_4/sub-0025664/ses-1/mri/iy_sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9Z/8f/MD5E-s47055699--53fb5a9f02855eb3538f15fd0f916a91.nii.gz/MD5E-s47055699--53fb5a9f02855eb3538f15fd0f916a91.nii.gz

SWU_4/sub-0025664/ses-1/mri/julichbrain_sub-0025664_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025664/ses-1/mri/julichbrain_sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fm/GZ/MD5E-s202307--8a8ba43438887417b8cdd81c69d93b99.nii.gz/MD5E-s202307--8a8ba43438887417b8cdd81c69d93b99.nii.gz

SWU_4/sub-0025664/ses-1/mri/lpba40_sub-0025664_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025664/ses-1/mri/lpba40_sub-0025664_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Jw/GZ/MD5E-s146726--f6353e8727277403c3ebebf559106215.nii.gz/MD5E-s146726--f6353e8727277403c3ebebf559106215.nii.gz

SWU_4/sub-0025664/ses-1/mri/m0wp1sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4p/Fx/MD5E-s2578617--90cd8c2ce39806c2e6d4068e776115ae.nii.gz/MD5E-s2578617--90cd8c2ce39806c2e6d4068e776115ae.nii.gz

SWU_4/sub-0025664/ses-1/mri/m0wp2sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jp/G2/MD5E-s2299763--4bced9d9268dfafdd10519719cab6d92.nii.gz/MD5E-s2299763--4bced9d9268dfafdd10519719cab6d92.nii.gz

SWU_4/sub-0025664/ses-1/mri/m0wp3sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fg/88/MD5E-s2598494--48ea81bd6414da3307d8d2e59bbd2533.nii.gz/MD5E-s2598494--48ea81bd6414da3307d8d2e59bbd2533.nii.gz

SWU_4/sub-0025664/ses-1/mri/mori_sub-0025664_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025664/ses-1/mri/mori_sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2p/6j/MD5E-s175637--e9060943d1225b93bbf70e484c500938.nii.gz/MD5E-s175637--e9060943d1225b93bbf70e484c500938.nii.gz

SWU_4/sub-0025664/ses-1/mri/mwp1sub-0025664_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/v6/gx/MD5E-s2581947--3f92af391ca7db81ed87ab6f301f5ec6.nii.gz/MD5E-s2581947--3f92af391ca7db81ed87ab6f301f5ec6.nii.gz

SWU_4/sub-0025664/ses-1/mri/mwp2sub-0025664_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025664/ses-1/mri/mwp3sub-0025664_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025664/ses-1/mri/neuromorphometrics_sub-0025664_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025664/ses-1/mri/neuromorphometrics_sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025664/ses-1/mri/p0sub-0025664_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/28/GW/MD5E-s653868--fc90d40ff0a0a4df37c13e23ef5d692f.nii.gz/MD5E-s653868--fc90d40ff0a0a4df37c13e23ef5d692f.nii.gz

SWU_4/sub-0025664/ses-1/mri/p1sub-0025664_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025664/ses-1/mri/p2sub-0025664_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025664/ses-1/mri/p3sub-0025664_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025664/ses-1/mri/rp1sub-0025664_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025664/ses-1/mri/rp2sub-0025664_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025664/ses-1/mri/rp3sub-0025664_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025664/ses-1/mri/t_sub-0025664_ses-1_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025664/ses-1/mri/t_sub-0025664_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025664/ses-1/mri/thalamus_sub-0025664_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025664/ses-1/mri/thalamus_sub-0025664_ses-1_run-1_T1w.nii.gz

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