[DATALAD RUNCMD] Compute SWU_2/sub-0027177/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_2/sub-0027177/ses-1/anat/sub-0027177_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_2/sub-0027177/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_2/sub-0027177/ses-1/label/catROI_sub-0027177_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KZ/2p/MD5E-s61210--4956813062a0c3b099d60635c351b790.mat/MD5E-s61210--4956813062a0c3b099d60635c351b790.mat

SWU_2/sub-0027177/ses-1/label/catROI_sub-0027177_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3K/kX/MD5E-s188873--38e0c331d5fdf93307ecad42ae3e53dd.xml/MD5E-s188873--38e0c331d5fdf93307ecad42ae3e53dd.xml

SWU_2/sub-0027177/ses-1/label/catROIs_sub-0027177_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VF/X9/MD5E-s120078--2e9fb0d133cc1c13d77d5107a7eb15f7.mat/MD5E-s120078--2e9fb0d133cc1c13d77d5107a7eb15f7.mat

SWU_2/sub-0027177/ses-1/label/catROIs_sub-0027177_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pV/mg/MD5E-s332094--ab367bde91a6515016e5d236ea07dcef.xml/MD5E-s332094--ab367bde91a6515016e5d236ea07dcef.xml

SWU_2/sub-0027177/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027177_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_2/sub-0027177/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9W/7g/MD5E-s162396--17e49e035cff7b9629cb9a20af3685d4.nii.gz/MD5E-s162396--17e49e035cff7b9629cb9a20af3685d4.nii.gz

SWU_2/sub-0027177/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027177_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_2/sub-0027177/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Q/ZG/MD5E-s181305--584b5c66386d7d7d6a3a5d74f8fdb198.nii.gz/MD5E-s181305--584b5c66386d7d7d6a3a5d74f8fdb198.nii.gz

SWU_2/sub-0027177/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027177_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_2/sub-0027177/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/50/Xk/MD5E-s244480--3b2f7bb584a3b8a6ff5106883caa930c.nii.gz/MD5E-s244480--3b2f7bb584a3b8a6ff5106883caa930c.nii.gz

SWU_2/sub-0027177/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027177_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_2/sub-0027177/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KP/Kp/MD5E-s272254--66e51df187df8c434b0faf51c2ea06a6.nii.gz/MD5E-s272254--66e51df187df8c434b0faf51c2ea06a6.nii.gz

SWU_2/sub-0027177/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027177_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_2/sub-0027177/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/W3/MD5E-s24584--6bde8421e5daf0430d9a651330671ce9.nii.gz/MD5E-s24584--6bde8421e5daf0430d9a651330671ce9.nii.gz

SWU_2/sub-0027177/ses-1/mri/aal3_sub-0027177_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_2/sub-0027177/ses-1/mri/aal3_sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WP/1X/MD5E-s183059--c2c3c1c0fbe60ff839d89c9ed31a3f2a.nii.gz/MD5E-s183059--c2c3c1c0fbe60ff839d89c9ed31a3f2a.nii.gz

SWU_2/sub-0027177/ses-1/mri/anatomy3_sub-0027177_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_2/sub-0027177/ses-1/mri/anatomy3_sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xf/qK/MD5E-s133659--1bb3668789634777686fef15ac84be5f.nii.gz/MD5E-s133659--1bb3668789634777686fef15ac84be5f.nii.gz

SWU_2/sub-0027177/ses-1/mri/anon_misub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fX/zm/MD5E-s7935042--7d0791026f782deae778958fd816c251.nii.gz/MD5E-s7935042--7d0791026f782deae778958fd816c251.nii.gz

SWU_2/sub-0027177/ses-1/mri/anon_msub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/96/g3/MD5E-s8174114--b7a23d6a5ba23594310d1270d90966dc.nii.gz/MD5E-s8174114--b7a23d6a5ba23594310d1270d90966dc.nii.gz

SWU_2/sub-0027177/ses-1/mri/cat_sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/jq/MD5E-s96663--70ab94d3ab2fcbb25027c5aa56ed35cb.nii.gz/MD5E-s96663--70ab94d3ab2fcbb25027c5aa56ed35cb.nii.gz

SWU_2/sub-0027177/ses-1/mri/cobra_sub-0027177_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_2/sub-0027177/ses-1/mri/cobra_sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p0/v6/MD5E-s47323--1167c2d05c3a6287f5c74735cdea68bb.nii.gz/MD5E-s47323--1167c2d05c3a6287f5c74735cdea68bb.nii.gz

SWU_2/sub-0027177/ses-1/mri/hammers_sub-0027177_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_2/sub-0027177/ses-1/mri/hammers_sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/Xg/MD5E-s143837--a57a78cc8b0e1d1b366e036d122c7221.nii.gz/MD5E-s143837--a57a78cc8b0e1d1b366e036d122c7221.nii.gz

SWU_2/sub-0027177/ses-1/mri/ibsr_sub-0027177_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_2/sub-0027177/ses-1/mri/ibsr_sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7M/vQ/MD5E-s153250--0d82bb2276a03b699a57fd9812b7e327.nii.gz/MD5E-s153250--0d82bb2276a03b699a57fd9812b7e327.nii.gz

SWU_2/sub-0027177/ses-1/mri/it_sub-0027177_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jm/9F/MD5E-s283--7346ae8808dc89fedc7d7a12d95245d9.mat/MD5E-s283--7346ae8808dc89fedc7d7a12d95245d9.mat

SWU_2/sub-0027177/ses-1/mri/it_sub-0027177_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z4/q3/MD5E-s282--60dfffd9ed3a9dc48144875a4247a86b.mat/MD5E-s282--60dfffd9ed3a9dc48144875a4247a86b.mat

SWU_2/sub-0027177/ses-1/mri/iy_sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gv/j3/MD5E-s43449706--24a6d75f87be6d7c938239ee8c505f86.nii.gz/MD5E-s43449706--24a6d75f87be6d7c938239ee8c505f86.nii.gz

SWU_2/sub-0027177/ses-1/mri/julichbrain_sub-0027177_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_2/sub-0027177/ses-1/mri/julichbrain_sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WK/xf/MD5E-s194400--35c86d230a1d4630da9a7066fc7e313d.nii.gz/MD5E-s194400--35c86d230a1d4630da9a7066fc7e313d.nii.gz

SWU_2/sub-0027177/ses-1/mri/lpba40_sub-0027177_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_2/sub-0027177/ses-1/mri/lpba40_sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027177/ses-1/mri/m0wp1sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8V/Wq/MD5E-s2584174--9cb2f4802d04c91e0fc0dfba3f278afd.nii.gz/MD5E-s2584174--9cb2f4802d04c91e0fc0dfba3f278afd.nii.gz

SWU_2/sub-0027177/ses-1/mri/m0wp2sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZW/7M/MD5E-s2299245--8d8882f6a82106add5c4bc7e83cb0b41.nii.gz/MD5E-s2299245--8d8882f6a82106add5c4bc7e83cb0b41.nii.gz

SWU_2/sub-0027177/ses-1/mri/m0wp3sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jF/4p/MD5E-s2482448--57d5174971ba91c4cc3a02b2c5243492.nii.gz/MD5E-s2482448--57d5174971ba91c4cc3a02b2c5243492.nii.gz

SWU_2/sub-0027177/ses-1/mri/mori_sub-0027177_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_2/sub-0027177/ses-1/mri/mori_sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xf/qw/MD5E-s169952--6206dccb86eabda2feff1c81cfd1a76e.nii.gz/MD5E-s169952--6206dccb86eabda2feff1c81cfd1a76e.nii.gz

SWU_2/sub-0027177/ses-1/mri/mwp1sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W3/P5/MD5E-s2596126--ee83fc2fe5038efdd81cfa88ac232cc3.nii.gz/MD5E-s2596126--ee83fc2fe5038efdd81cfa88ac232cc3.nii.gz

SWU_2/sub-0027177/ses-1/mri/mwp2sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027177/ses-1/mri/mwp3sub-0027177_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027177/ses-1/mri/neuromorphometrics_sub-0027177_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_2/sub-0027177/ses-1/mri/neuromorphometrics_sub-0027177_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027177/ses-1/mri/p0sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5X/2W/MD5E-s605681--072ed66f63bba28c75fe2cf8fabe13cd.nii.gz/MD5E-s605681--072ed66f63bba28c75fe2cf8fabe13cd.nii.gz

SWU_2/sub-0027177/ses-1/mri/p1sub-0027177_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027177/ses-1/mri/p2sub-0027177_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027177/ses-1/mri/p3sub-0027177_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027177/ses-1/mri/rp1sub-0027177_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027177/ses-1/mri/rp2sub-0027177_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027177/ses-1/mri/rp3sub-0027177_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027177/ses-1/mri/t_sub-0027177_ses-1_run-1_T1w_affine_reorient.mat

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SWU_2/sub-0027177/ses-1/mri/t_sub-0027177_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_2/sub-0027177/ses-1/mri/thalamus_sub-0027177_ses-1_run-1_T1w.csv

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SWU_2/sub-0027177/ses-1/mri/thalamus_sub-0027177_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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