[DATALAD RUNCMD] Compute BNU_1/sub-0025883/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025883/ses-2/anat/sub-0025883_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025883/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025883/ses-2/label/catROI_sub-0025883_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f7/GM/MD5E-s61311--dddedc0982172b4e8b45943812815d95.mat/MD5E-s61311--dddedc0982172b4e8b45943812815d95.mat

BNU_1/sub-0025883/ses-2/label/catROI_sub-0025883_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XV/F7/MD5E-s188651--86be27cf0844318041c99ca433796c2f.xml/MD5E-s188651--86be27cf0844318041c99ca433796c2f.xml

BNU_1/sub-0025883/ses-2/label/catROIs_sub-0025883_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3z/Xw/MD5E-s119973--053ea2257e93dc996afb3dc33b4c3598.mat/MD5E-s119973--053ea2257e93dc996afb3dc33b4c3598.mat

BNU_1/sub-0025883/ses-2/label/catROIs_sub-0025883_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3q/4P/MD5E-s332141--dd6bedba24617d349ce7c8e76c393198.xml/MD5E-s332141--dd6bedba24617d349ce7c8e76c393198.xml

BNU_1/sub-0025883/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025883_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025883/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V3/VF/MD5E-s157340--824ad7c86599fad303bdadb45fd23793.nii.gz/MD5E-s157340--824ad7c86599fad303bdadb45fd23793.nii.gz

BNU_1/sub-0025883/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025883_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025883/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xp/pP/MD5E-s177086--b837035a666f4080cb15a3e57acc8d51.nii.gz/MD5E-s177086--b837035a666f4080cb15a3e57acc8d51.nii.gz

BNU_1/sub-0025883/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025883_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025883/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/7Z/MD5E-s237051--8d1644d1a994d2953b298f3697207602.nii.gz/MD5E-s237051--8d1644d1a994d2953b298f3697207602.nii.gz

BNU_1/sub-0025883/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025883_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025883/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6z/6V/MD5E-s265522--c144165d85acbb1f7b2e27163d2bed7b.nii.gz/MD5E-s265522--c144165d85acbb1f7b2e27163d2bed7b.nii.gz

BNU_1/sub-0025883/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025883_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025883/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xf/mp/MD5E-s20897--145b5780d2b5c2d908b27aaafda763bf.nii.gz/MD5E-s20897--145b5780d2b5c2d908b27aaafda763bf.nii.gz

BNU_1/sub-0025883/ses-2/mri/aal3_sub-0025883_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025883/ses-2/mri/aal3_sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0w/0j/MD5E-s178490--0148b50b419ac58b698f070fad0a7620.nii.gz/MD5E-s178490--0148b50b419ac58b698f070fad0a7620.nii.gz

BNU_1/sub-0025883/ses-2/mri/anatomy3_sub-0025883_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025883/ses-2/mri/anatomy3_sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wP/85/MD5E-s127473--c5bcfa66fa564eb13bd252b219afba01.nii.gz/MD5E-s127473--c5bcfa66fa564eb13bd252b219afba01.nii.gz

BNU_1/sub-0025883/ses-2/mri/anon_misub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6z/k5/MD5E-s4411254--879edc64f7a714b665e46a666497a54c.nii.gz/MD5E-s4411254--879edc64f7a714b665e46a666497a54c.nii.gz

BNU_1/sub-0025883/ses-2/mri/anon_msub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1X/jf/MD5E-s10498719--c2440db15632ebb13dae316ae4bd3677.nii.gz/MD5E-s10498719--c2440db15632ebb13dae316ae4bd3677.nii.gz

BNU_1/sub-0025883/ses-2/mri/cat_sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/82/x4/MD5E-s94956--593e8619290492a3cd1b94f2f67330bb.nii.gz/MD5E-s94956--593e8619290492a3cd1b94f2f67330bb.nii.gz

BNU_1/sub-0025883/ses-2/mri/cobra_sub-0025883_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025883/ses-2/mri/cobra_sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q0/px/MD5E-s43782--4e16adc335c8fa0f0b35931a9b069c06.nii.gz/MD5E-s43782--4e16adc335c8fa0f0b35931a9b069c06.nii.gz

BNU_1/sub-0025883/ses-2/mri/hammers_sub-0025883_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025883/ses-2/mri/hammers_sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gP/mx/MD5E-s140449--32bfa04e1221e4d4c8e81484b0ff73b5.nii.gz/MD5E-s140449--32bfa04e1221e4d4c8e81484b0ff73b5.nii.gz

BNU_1/sub-0025883/ses-2/mri/ibsr_sub-0025883_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025883/ses-2/mri/ibsr_sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/66/zm/MD5E-s148289--267208528ec08ff17d0efac4d1217405.nii.gz/MD5E-s148289--267208528ec08ff17d0efac4d1217405.nii.gz

BNU_1/sub-0025883/ses-2/mri/it_sub-0025883_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1J/J3/MD5E-s283--b0ef4bf39fe5b2fad4a0ccb875aa1c8f.mat/MD5E-s283--b0ef4bf39fe5b2fad4a0ccb875aa1c8f.mat

BNU_1/sub-0025883/ses-2/mri/it_sub-0025883_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M9/kZ/MD5E-s283--dd67655d43f1154e9ebaf7050aa35b25.mat/MD5E-s283--dd67655d43f1154e9ebaf7050aa35b25.mat

BNU_1/sub-0025883/ses-2/mri/iy_sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/97/M5/MD5E-s38553676--1dda0c407e8883d5792606aa02196993.nii.gz/MD5E-s38553676--1dda0c407e8883d5792606aa02196993.nii.gz

BNU_1/sub-0025883/ses-2/mri/julichbrain_sub-0025883_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025883/ses-2/mri/julichbrain_sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8G/Qv/MD5E-s188645--b7ea453d1d8f60135cdd93908b79f0f8.nii.gz/MD5E-s188645--b7ea453d1d8f60135cdd93908b79f0f8.nii.gz

BNU_1/sub-0025883/ses-2/mri/lpba40_sub-0025883_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025883/ses-2/mri/lpba40_sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q8/GX/MD5E-s138655--cb3d67d9fbf12d99712ab19d4f42c913.nii.gz/MD5E-s138655--cb3d67d9fbf12d99712ab19d4f42c913.nii.gz

BNU_1/sub-0025883/ses-2/mri/m0wp1sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gF/vv/MD5E-s2588808--0d668eefd537e61a5306e994d73bf04e.nii.gz/MD5E-s2588808--0d668eefd537e61a5306e994d73bf04e.nii.gz

BNU_1/sub-0025883/ses-2/mri/m0wp2sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KK/ZM/MD5E-s2290175--4400d8d460d560d0b6f6ab9e0dec8ee0.nii.gz/MD5E-s2290175--4400d8d460d560d0b6f6ab9e0dec8ee0.nii.gz

BNU_1/sub-0025883/ses-2/mri/m0wp3sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GK/j4/MD5E-s2535056--198f0258ff5f4f2a4a0cd973d97f7f0f.nii.gz/MD5E-s2535056--198f0258ff5f4f2a4a0cd973d97f7f0f.nii.gz

BNU_1/sub-0025883/ses-2/mri/mori_sub-0025883_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025883/ses-2/mri/mori_sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Q/Px/MD5E-s162878--76dcf8a2b2954088d1e1b06aa61c4155.nii.gz/MD5E-s162878--76dcf8a2b2954088d1e1b06aa61c4155.nii.gz

BNU_1/sub-0025883/ses-2/mri/mwp1sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pk/9Z/MD5E-s2589263--1ce05e9ebe929b78b982c6245cb14b65.nii.gz/MD5E-s2589263--1ce05e9ebe929b78b982c6245cb14b65.nii.gz

BNU_1/sub-0025883/ses-2/mri/mwp2sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0P/Zg/MD5E-s2283724--327438033e6bbe9a4e64470d88d63616.nii.gz/MD5E-s2283724--327438033e6bbe9a4e64470d88d63616.nii.gz

BNU_1/sub-0025883/ses-2/mri/mwp3sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jM/fJ/MD5E-s2533037--41d259164ff3210e5d5ba7b23c0291c2.nii.gz/MD5E-s2533037--41d259164ff3210e5d5ba7b23c0291c2.nii.gz

BNU_1/sub-0025883/ses-2/mri/neuromorphometrics_sub-0025883_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025883/ses-2/mri/neuromorphometrics_sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P2/Mm/MD5E-s191718--00f031d4a6f61f338e278a0a38d4ac1c.nii.gz/MD5E-s191718--00f031d4a6f61f338e278a0a38d4ac1c.nii.gz

BNU_1/sub-0025883/ses-2/mri/p0sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/94/33/MD5E-s846114--5eb37374cdee9ecca557056dd803df61.nii.gz/MD5E-s846114--5eb37374cdee9ecca557056dd803df61.nii.gz

BNU_1/sub-0025883/ses-2/mri/p1sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j1/Pk/MD5E-s861109--f6b54c6dd740fefc018dce38ea504972.nii.gz/MD5E-s861109--f6b54c6dd740fefc018dce38ea504972.nii.gz

BNU_1/sub-0025883/ses-2/mri/p2sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/90/7Q/MD5E-s573798--9de09cb81f47954a17cc08197ec3c443.nii.gz/MD5E-s573798--9de09cb81f47954a17cc08197ec3c443.nii.gz

BNU_1/sub-0025883/ses-2/mri/p3sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gv/P9/MD5E-s542457--15d0090652e834516f1d3a77ed352494.nii.gz/MD5E-s542457--15d0090652e834516f1d3a77ed352494.nii.gz

BNU_1/sub-0025883/ses-2/mri/rp1sub-0025883_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PX/G9/MD5E-s455147--37270374f45dde3874313dd9af95a77c.nii.gz/MD5E-s455147--37270374f45dde3874313dd9af95a77c.nii.gz

BNU_1/sub-0025883/ses-2/mri/rp2sub-0025883_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025883/ses-2/mri/rp3sub-0025883_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kf/G3/MD5E-s293300--ff3d5b5c7fab56b42a2bf449010dd3a1.nii.gz/MD5E-s293300--ff3d5b5c7fab56b42a2bf449010dd3a1.nii.gz

BNU_1/sub-0025883/ses-2/mri/t_sub-0025883_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/88/Kj/MD5E-s284--f456795d5e8c7eb081094ed705809207.mat/MD5E-s284--f456795d5e8c7eb081094ed705809207.mat

BNU_1/sub-0025883/ses-2/mri/t_sub-0025883_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wW/wM/MD5E-s283--4663d668f2f185e60c5f40724e856287.mat/MD5E-s283--4663d668f2f185e60c5f40724e856287.mat

BNU_1/sub-0025883/ses-2/mri/thalamus_sub-0025883_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BNU_1/sub-0025883/ses-2/mri/thalamus_sub-0025883_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/28/4p/MD5E-s13596--9462f064e1cc3d8d1abb7699bb035aca.nii.gz/MD5E-s13596--9462f064e1cc3d8d1abb7699bb035aca.nii.gz

BNU_1/sub-0025883/ses-2/mri/wj_sub-0025883_ses-2_run-1_T1w.nii.gz

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