[DATALAD RUNCMD] Compute MRN/sub-0027043/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027043/ses-2/anat/sub-0027043_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027043/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027043/ses-2/label/catROI_sub-0027043_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/93/Kq/MD5E-s61339--feaa58809bd3a0bdf82d1bb8d334c7e9.mat/MD5E-s61339--feaa58809bd3a0bdf82d1bb8d334c7e9.mat

MRN/sub-0027043/ses-2/label/catROI_sub-0027043_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4G/z3/MD5E-s189160--781892c883e75cdf0630f11355f8d9d4.xml/MD5E-s189160--781892c883e75cdf0630f11355f8d9d4.xml

MRN/sub-0027043/ses-2/label/catROIs_sub-0027043_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f0/g2/MD5E-s120116--70ad89894e915ab951b7321f0eae4d7d.mat/MD5E-s120116--70ad89894e915ab951b7321f0eae4d7d.mat

MRN/sub-0027043/ses-2/label/catROIs_sub-0027043_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jW/P1/MD5E-s332137--0375c28c504246c91bd766fc90b0f366.xml/MD5E-s332137--0375c28c504246c91bd766fc90b0f366.xml

MRN/sub-0027043/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027043_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027043/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027043_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2v/29/MD5E-s172967--24894d763478cddee6bfa0b20234cf16.nii.gz/MD5E-s172967--24894d763478cddee6bfa0b20234cf16.nii.gz

MRN/sub-0027043/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027043_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027043/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027043_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X7/7x/MD5E-s192966--a5c8f9d130cfaa68cb8a6ed893fa4e3e.nii.gz/MD5E-s192966--a5c8f9d130cfaa68cb8a6ed893fa4e3e.nii.gz

MRN/sub-0027043/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027043_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027043/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027043_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jx/Fq/MD5E-s256622--611bd9fb4f53bc1315517d5902273160.nii.gz/MD5E-s256622--611bd9fb4f53bc1315517d5902273160.nii.gz

MRN/sub-0027043/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027043_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027043/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027043_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J9/W8/MD5E-s284107--d6d90fc98750e0dfd8d711f2989581a4.nii.gz/MD5E-s284107--d6d90fc98750e0dfd8d711f2989581a4.nii.gz

MRN/sub-0027043/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027043_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MRN/sub-0027043/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027043_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q7/fF/MD5E-s26567--424da949ce749f472eccdbec54952eaa.nii.gz/MD5E-s26567--424da949ce749f472eccdbec54952eaa.nii.gz

MRN/sub-0027043/ses-2/mri/aal3_sub-0027043_ses-2_run-1_T1w.csv

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MRN/sub-0027043/ses-2/mri/aal3_sub-0027043_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wq/9q/MD5E-s195544--9b51c83df1be5323c25f36d7cd6c2426.nii.gz/MD5E-s195544--9b51c83df1be5323c25f36d7cd6c2426.nii.gz

MRN/sub-0027043/ses-2/mri/anatomy3_sub-0027043_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027043/ses-2/mri/anatomy3_sub-0027043_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jx/2Q/MD5E-s140940--91675ca75583dad78d7dfffd5502a443.nii.gz/MD5E-s140940--91675ca75583dad78d7dfffd5502a443.nii.gz

MRN/sub-0027043/ses-2/mri/anon_misub-0027043_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/93/38/MD5E-s9653313--2b28cdc6da16600fb5564ae3adfe1a82.nii.gz/MD5E-s9653313--2b28cdc6da16600fb5564ae3adfe1a82.nii.gz

MRN/sub-0027043/ses-2/mri/anon_msub-0027043_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XF/j0/MD5E-s10788088--df683262ce021bb826759e1edbae5589.nii.gz/MD5E-s10788088--df683262ce021bb826759e1edbae5589.nii.gz

MRN/sub-0027043/ses-2/mri/cat_sub-0027043_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/km/95/MD5E-s104211--bf3b0b323a575d7b949cc4b2c568a81b.nii.gz/MD5E-s104211--bf3b0b323a575d7b949cc4b2c568a81b.nii.gz

MRN/sub-0027043/ses-2/mri/cobra_sub-0027043_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027043/ses-2/mri/cobra_sub-0027043_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fX/Xg/MD5E-s50181--c92c7e6925cf203f1c3bead4e37dea63.nii.gz/MD5E-s50181--c92c7e6925cf203f1c3bead4e37dea63.nii.gz

MRN/sub-0027043/ses-2/mri/hammers_sub-0027043_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MRN/sub-0027043/ses-2/mri/hammers_sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/ibsr_sub-0027043_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MRN/sub-0027043/ses-2/mri/ibsr_sub-0027043_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027043/ses-2/mri/it_sub-0027043_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qw/P8/MD5E-s283--8d3a85cc524eed03f81cbe385b8fd419.mat/MD5E-s283--8d3a85cc524eed03f81cbe385b8fd419.mat

MRN/sub-0027043/ses-2/mri/it_sub-0027043_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qX/F3/MD5E-s283--5a980bf306a6d8660bf1324acc4b3604.mat/MD5E-s283--5a980bf306a6d8660bf1324acc4b3604.mat

MRN/sub-0027043/ses-2/mri/iy_sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/julichbrain_sub-0027043_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027043/ses-2/mri/julichbrain_sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/lpba40_sub-0027043_ses-2_run-1_T1w.csv

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MRN/sub-0027043/ses-2/mri/lpba40_sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/m0wp1sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/m0wp2sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/m0wp3sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/mori_sub-0027043_ses-2_run-1_T1w.csv

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MRN/sub-0027043/ses-2/mri/mori_sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/mwp1sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/mwp2sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/mwp3sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/neuromorphometrics_sub-0027043_ses-2_run-1_T1w.csv

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MRN/sub-0027043/ses-2/mri/neuromorphometrics_sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/p0sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/p1sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/p2sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/p3sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/rp1sub-0027043_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027043/ses-2/mri/rp2sub-0027043_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027043/ses-2/mri/rp3sub-0027043_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027043/ses-2/mri/t_sub-0027043_ses-2_run-1_T1w_affine_reorient.mat

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MRN/sub-0027043/ses-2/mri/t_sub-0027043_ses-2_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027043/ses-2/mri/thalamus_sub-0027043_ses-2_run-1_T1w.csv

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MRN/sub-0027043/ses-2/mri/thalamus_sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/wj_sub-0027043_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027043/ses-2/mri/wmisub-0027043_ses-2_run-1_T1w.nii.gz

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