[DATALAD RUNCMD] Compute BMB_1/sub-0003039/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BMB_1/sub-0003039/ses-1/anat/sub-0003039_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BMB_1/sub-0003039/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BMB_1/sub-0003039/ses-1/label/catROI_sub-0003039_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0G/fW/MD5E-s57964--350c67559ac8b9540eafd54c1aa2c82d.mat/MD5E-s57964--350c67559ac8b9540eafd54c1aa2c82d.mat

BMB_1/sub-0003039/ses-1/label/catROI_sub-0003039_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/75/1P/MD5E-s188964--0fab5fc96c06623700e174c4ff9b57e8.xml/MD5E-s188964--0fab5fc96c06623700e174c4ff9b57e8.xml

BMB_1/sub-0003039/ses-1/label/catROIs_sub-0003039_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/PP/MD5E-s119878--4a62cc577b92b9ce43e9db98552815be.mat/MD5E-s119878--4a62cc577b92b9ce43e9db98552815be.mat

BMB_1/sub-0003039/ses-1/label/catROIs_sub-0003039_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kj/w8/MD5E-s332161--614e5b73918e4faef715629bd766cae9.xml/MD5E-s332161--614e5b73918e4faef715629bd766cae9.xml

BMB_1/sub-0003039/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BMB_1/sub-0003039/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gk/7q/MD5E-s170040--b3f400aeb31dd3d8fe36833b44ffb5e2.nii.gz/MD5E-s170040--b3f400aeb31dd3d8fe36833b44ffb5e2.nii.gz

BMB_1/sub-0003039/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BMB_1/sub-0003039/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X4/Xx/MD5E-s189992--8116f78ba1ba066bde107ec3183828ee.nii.gz/MD5E-s189992--8116f78ba1ba066bde107ec3183828ee.nii.gz

BMB_1/sub-0003039/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BMB_1/sub-0003039/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zM/MP/MD5E-s257222--8e8d045a30122453ea103a2af7aca566.nii.gz/MD5E-s257222--8e8d045a30122453ea103a2af7aca566.nii.gz

BMB_1/sub-0003039/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BMB_1/sub-0003039/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JQ/08/MD5E-s286498--eae3d060217678d8980658d3d0bfd896.nii.gz/MD5E-s286498--eae3d060217678d8980658d3d0bfd896.nii.gz

BMB_1/sub-0003039/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BMB_1/sub-0003039/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XF/9w/MD5E-s24595--786f49243bb0f7ab6e3ca2139b7e1b1a.nii.gz/MD5E-s24595--786f49243bb0f7ab6e3ca2139b7e1b1a.nii.gz

BMB_1/sub-0003039/ses-1/mri/aal3_sub-0003039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BMB_1/sub-0003039/ses-1/mri/aal3_sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5k/M1/MD5E-s191590--7c210772be5bb1941272e9c58bb73754.nii.gz/MD5E-s191590--7c210772be5bb1941272e9c58bb73754.nii.gz

BMB_1/sub-0003039/ses-1/mri/anatomy3_sub-0003039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BMB_1/sub-0003039/ses-1/mri/anatomy3_sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2v/z8/MD5E-s140288--4d52e8df590187ff6e1b1a538b3fd479.nii.gz/MD5E-s140288--4d52e8df590187ff6e1b1a538b3fd479.nii.gz

BMB_1/sub-0003039/ses-1/mri/anon_misub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xz/ZZ/MD5E-s5662851--e2436d8f4da45d7d6ef2c2da837fc760.nii.gz/MD5E-s5662851--e2436d8f4da45d7d6ef2c2da837fc760.nii.gz

BMB_1/sub-0003039/ses-1/mri/anon_msub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mw/QX/MD5E-s12921198--8243a69bff7102a1dcc2304a4d446386.nii.gz/MD5E-s12921198--8243a69bff7102a1dcc2304a4d446386.nii.gz

BMB_1/sub-0003039/ses-1/mri/cat_sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zP/VJ/MD5E-s103882--aa102ef39a920f8767215f2d6ad10554.nii.gz/MD5E-s103882--aa102ef39a920f8767215f2d6ad10554.nii.gz

BMB_1/sub-0003039/ses-1/mri/cobra_sub-0003039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BMB_1/sub-0003039/ses-1/mri/cobra_sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f3/9z/MD5E-s50999--0b3caf600ae11c8025c4fa7063b4a73c.nii.gz/MD5E-s50999--0b3caf600ae11c8025c4fa7063b4a73c.nii.gz

BMB_1/sub-0003039/ses-1/mri/hammers_sub-0003039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BMB_1/sub-0003039/ses-1/mri/hammers_sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9V/Fq/MD5E-s152432--30cb60127990e831bdf807d59d2da48f.nii.gz/MD5E-s152432--30cb60127990e831bdf807d59d2da48f.nii.gz

BMB_1/sub-0003039/ses-1/mri/ibsr_sub-0003039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BMB_1/sub-0003039/ses-1/mri/ibsr_sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9f/q8/MD5E-s159463--4d8461f47b14e31542e3a06e108cf95a.nii.gz/MD5E-s159463--4d8461f47b14e31542e3a06e108cf95a.nii.gz

BMB_1/sub-0003039/ses-1/mri/it_sub-0003039_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QM/gq/MD5E-s283--2f2aa19a3ecd434af23603a7406b7742.mat/MD5E-s283--2f2aa19a3ecd434af23603a7406b7742.mat

BMB_1/sub-0003039/ses-1/mri/it_sub-0003039_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/82/Qp/MD5E-s283--13aa643a5cda959f6a5c4c7d1bed099e.mat/MD5E-s283--13aa643a5cda959f6a5c4c7d1bed099e.mat

BMB_1/sub-0003039/ses-1/mri/iy_sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x0/0V/MD5E-s48417488--d5ec8e97960e3dd6d49705ef70d74a5d.nii.gz/MD5E-s48417488--d5ec8e97960e3dd6d49705ef70d74a5d.nii.gz

BMB_1/sub-0003039/ses-1/mri/julichbrain_sub-0003039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BMB_1/sub-0003039/ses-1/mri/julichbrain_sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p9/Vk/MD5E-s204118--0445d207fba69ab4ed6d886219182ef8.nii.gz/MD5E-s204118--0445d207fba69ab4ed6d886219182ef8.nii.gz

BMB_1/sub-0003039/ses-1/mri/lpba40_sub-0003039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BMB_1/sub-0003039/ses-1/mri/lpba40_sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6z/fM/MD5E-s148758--17dda05fca97e7d37b03a8db1214e431.nii.gz/MD5E-s148758--17dda05fca97e7d37b03a8db1214e431.nii.gz

BMB_1/sub-0003039/ses-1/mri/m0wp1sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9K/9j/MD5E-s2579087--c610b3ff99df0592bf7e945b8de08a6a.nii.gz/MD5E-s2579087--c610b3ff99df0592bf7e945b8de08a6a.nii.gz

BMB_1/sub-0003039/ses-1/mri/m0wp2sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j6/0Z/MD5E-s2290202--b3e54f7a415dd6b9492fff13a3b7590e.nii.gz/MD5E-s2290202--b3e54f7a415dd6b9492fff13a3b7590e.nii.gz

BMB_1/sub-0003039/ses-1/mri/m0wp3sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qX/25/MD5E-s2588547--28b8020a5720775dd5b299e8b17e49f0.nii.gz/MD5E-s2588547--28b8020a5720775dd5b299e8b17e49f0.nii.gz

BMB_1/sub-0003039/ses-1/mri/mori_sub-0003039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BMB_1/sub-0003039/ses-1/mri/mori_sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6j/wk/MD5E-s176629--e59b83a3c58cea5a6fa0381f15dfe084.nii.gz/MD5E-s176629--e59b83a3c58cea5a6fa0381f15dfe084.nii.gz

BMB_1/sub-0003039/ses-1/mri/mwp1sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8w/gq/MD5E-s2580304--76670e0e4afdc8f272dbe9653bbf7006.nii.gz/MD5E-s2580304--76670e0e4afdc8f272dbe9653bbf7006.nii.gz

BMB_1/sub-0003039/ses-1/mri/mwp2sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K1/ZP/MD5E-s2290276--079ec2886c90c81949ccd8ed45cddf51.nii.gz/MD5E-s2290276--079ec2886c90c81949ccd8ed45cddf51.nii.gz

BMB_1/sub-0003039/ses-1/mri/mwp3sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m4/8q/MD5E-s2584957--0ab52aa9cd091b7b34d5c3a2c6ef76d4.nii.gz/MD5E-s2584957--0ab52aa9cd091b7b34d5c3a2c6ef76d4.nii.gz

BMB_1/sub-0003039/ses-1/mri/neuromorphometrics_sub-0003039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BMB_1/sub-0003039/ses-1/mri/neuromorphometrics_sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vx/vW/MD5E-s207744--4ad92a20e958d688ffe1dc628cac7604.nii.gz/MD5E-s207744--4ad92a20e958d688ffe1dc628cac7604.nii.gz

BMB_1/sub-0003039/ses-1/mri/p0sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X0/f5/MD5E-s675560--7a8b67afd9cc41bb5085cc5e2e131a78.nii.gz/MD5E-s675560--7a8b67afd9cc41bb5085cc5e2e131a78.nii.gz

BMB_1/sub-0003039/ses-1/mri/p1sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3W/Kx/MD5E-s711593--2899bf11bc157477103fb13400aecd1b.nii.gz/MD5E-s711593--2899bf11bc157477103fb13400aecd1b.nii.gz

BMB_1/sub-0003039/ses-1/mri/p2sub-0003039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k8/q7/MD5E-s450422--758eb4c6e31108464c4289a4b37f64c6.nii.gz/MD5E-s450422--758eb4c6e31108464c4289a4b37f64c6.nii.gz

BMB_1/sub-0003039/ses-1/mri/p3sub-0003039_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/10/1k/MD5E-s431745--14716547036bf7b90981d01dba5c7306.nii.gz/MD5E-s431745--14716547036bf7b90981d01dba5c7306.nii.gz

BMB_1/sub-0003039/ses-1/mri/rp1sub-0003039_ses-1_run-1_T1w_affine.nii.gz

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BMB_1/sub-0003039/ses-1/mri/rp2sub-0003039_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m3/Vm/MD5E-s303505--8a84222e1825e2c3c5384e0a856dc6a8.nii.gz/MD5E-s303505--8a84222e1825e2c3c5384e0a856dc6a8.nii.gz

BMB_1/sub-0003039/ses-1/mri/rp3sub-0003039_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BMB_1/sub-0003039/ses-1/mri/t_sub-0003039_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gK/5K/MD5E-s284--36a348f0515a07823ae4a13530fdabba.mat/MD5E-s284--36a348f0515a07823ae4a13530fdabba.mat

BMB_1/sub-0003039/ses-1/mri/t_sub-0003039_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MZ/53/MD5E-s284--918f69d3cb91627435942f37b3bfa69e.mat/MD5E-s284--918f69d3cb91627435942f37b3bfa69e.mat

BMB_1/sub-0003039/ses-1/mri/thalamus_sub-0003039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BMB_1/sub-0003039/ses-1/mri/thalamus_sub-0003039_ses-1_run-1_T1w.nii.gz

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