[DATALAD RUNCMD] Compute BNU_1/sub-0025906/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025906/ses-2/anat/sub-0025906_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025906/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025906/ses-2/label/catROI_sub-0025906_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gJ/62/MD5E-s57956--bdc89a64b8fbb7ae4dea32ae5b0051b1.mat/MD5E-s57956--bdc89a64b8fbb7ae4dea32ae5b0051b1.mat

BNU_1/sub-0025906/ses-2/label/catROI_sub-0025906_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6z/96/MD5E-s188820--b1ddda4320e81f8b4845d1186911f536.xml/MD5E-s188820--b1ddda4320e81f8b4845d1186911f536.xml

BNU_1/sub-0025906/ses-2/label/catROIs_sub-0025906_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p0/2g/MD5E-s120034--b524bc509d1a673a3f12ae7097d1176a.mat/MD5E-s120034--b524bc509d1a673a3f12ae7097d1176a.mat

BNU_1/sub-0025906/ses-2/label/catROIs_sub-0025906_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j1/8m/MD5E-s332149--39417fc3f1b88142cb04d0d8e28add9a.xml/MD5E-s332149--39417fc3f1b88142cb04d0d8e28add9a.xml

BNU_1/sub-0025906/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025906_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025906/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vX/Zg/MD5E-s146260--8a3049105791d64aacea0a47ec24b8f2.nii.gz/MD5E-s146260--8a3049105791d64aacea0a47ec24b8f2.nii.gz

BNU_1/sub-0025906/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025906_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025906/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g5/4V/MD5E-s165707--042330f1c52c9372ad801abd2866e998.nii.gz/MD5E-s165707--042330f1c52c9372ad801abd2866e998.nii.gz

BNU_1/sub-0025906/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025906_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025906/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J3/J1/MD5E-s222092--2f92822e526600478015bb37985c2515.nii.gz/MD5E-s222092--2f92822e526600478015bb37985c2515.nii.gz

BNU_1/sub-0025906/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025906_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025906/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gg/2z/MD5E-s247501--64a280cd8dd662517c40c73ead36d5c3.nii.gz/MD5E-s247501--64a280cd8dd662517c40c73ead36d5c3.nii.gz

BNU_1/sub-0025906/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025906_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025906/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1w/Q9/MD5E-s20239--a56d3f47fdf5085ad360f712d9152a75.nii.gz/MD5E-s20239--a56d3f47fdf5085ad360f712d9152a75.nii.gz

BNU_1/sub-0025906/ses-2/mri/aal3_sub-0025906_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025906/ses-2/mri/aal3_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mG/4W/MD5E-s167304--88c7732157ec08813af037a9757a49a5.nii.gz/MD5E-s167304--88c7732157ec08813af037a9757a49a5.nii.gz

BNU_1/sub-0025906/ses-2/mri/anatomy3_sub-0025906_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025906/ses-2/mri/anatomy3_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FG/px/MD5E-s119669--05343e101eed0100a7ec347002aa21ed.nii.gz/MD5E-s119669--05343e101eed0100a7ec347002aa21ed.nii.gz

BNU_1/sub-0025906/ses-2/mri/anon_misub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4f/0Z/MD5E-s4134593--5b71a08cbf5aacb86109e7b71678ccaa.nii.gz/MD5E-s4134593--5b71a08cbf5aacb86109e7b71678ccaa.nii.gz

BNU_1/sub-0025906/ses-2/mri/anon_msub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fw/kG/MD5E-s7200097--dff94441eef920def5e2409ef9bc64fa.nii.gz/MD5E-s7200097--dff94441eef920def5e2409ef9bc64fa.nii.gz

BNU_1/sub-0025906/ses-2/mri/cat_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pZ/qW/MD5E-s90786--4e0773e5eb98c58d86b1a559b11951ef.nii.gz/MD5E-s90786--4e0773e5eb98c58d86b1a559b11951ef.nii.gz

BNU_1/sub-0025906/ses-2/mri/cobra_sub-0025906_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025906/ses-2/mri/cobra_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1q/58/MD5E-s41825--29eb141449c4b9c693db8088d7b1d33f.nii.gz/MD5E-s41825--29eb141449c4b9c693db8088d7b1d33f.nii.gz

BNU_1/sub-0025906/ses-2/mri/hammers_sub-0025906_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025906/ses-2/mri/hammers_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m5/w4/MD5E-s132550--7622bca2a4c11f0553ebc9e833b09f25.nii.gz/MD5E-s132550--7622bca2a4c11f0553ebc9e833b09f25.nii.gz

BNU_1/sub-0025906/ses-2/mri/ibsr_sub-0025906_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025906/ses-2/mri/ibsr_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G2/qM/MD5E-s139293--464baae7d3f10fa05468ad83d40f0001.nii.gz/MD5E-s139293--464baae7d3f10fa05468ad83d40f0001.nii.gz

BNU_1/sub-0025906/ses-2/mri/it_sub-0025906_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2K/Zg/MD5E-s283--11f8886eccb7a0fcc969ef47c7f6902b.mat/MD5E-s283--11f8886eccb7a0fcc969ef47c7f6902b.mat

BNU_1/sub-0025906/ses-2/mri/it_sub-0025906_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qf/ZJ/MD5E-s283--138664d591ec13726aef0a55a57fa0b1.mat/MD5E-s283--138664d591ec13726aef0a55a57fa0b1.mat

BNU_1/sub-0025906/ses-2/mri/iy_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/69/6x/MD5E-s35591890--7639545560ca6a1684d007ed0e26cbcd.nii.gz/MD5E-s35591890--7639545560ca6a1684d007ed0e26cbcd.nii.gz

BNU_1/sub-0025906/ses-2/mri/julichbrain_sub-0025906_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025906/ses-2/mri/julichbrain_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kx/gz/MD5E-s178002--f7988744ca3abc5acffb89a96af9ec4f.nii.gz/MD5E-s178002--f7988744ca3abc5acffb89a96af9ec4f.nii.gz

BNU_1/sub-0025906/ses-2/mri/lpba40_sub-0025906_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025906/ses-2/mri/lpba40_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zp/zM/MD5E-s130739--109fa5b383ea286eb79e90299df89ba3.nii.gz/MD5E-s130739--109fa5b383ea286eb79e90299df89ba3.nii.gz

BNU_1/sub-0025906/ses-2/mri/m0wp1sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pP/3G/MD5E-s2577120--1582c9d2d97d3d0e500cd4a70170173d.nii.gz/MD5E-s2577120--1582c9d2d97d3d0e500cd4a70170173d.nii.gz

BNU_1/sub-0025906/ses-2/mri/m0wp2sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gv/QG/MD5E-s2300131--595e10481eab390742da83bd5db39e9a.nii.gz/MD5E-s2300131--595e10481eab390742da83bd5db39e9a.nii.gz

BNU_1/sub-0025906/ses-2/mri/m0wp3sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VP/vp/MD5E-s2491057--c0723877649afb700c8056124609e42a.nii.gz/MD5E-s2491057--c0723877649afb700c8056124609e42a.nii.gz

BNU_1/sub-0025906/ses-2/mri/mori_sub-0025906_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025906/ses-2/mri/mori_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4F/V5/MD5E-s152778--c001ec38eb910257ea8a0536506900b1.nii.gz/MD5E-s152778--c001ec38eb910257ea8a0536506900b1.nii.gz

BNU_1/sub-0025906/ses-2/mri/mwp1sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P5/78/MD5E-s2579665--7e4cfbffadbcf3592c65c3352134a43e.nii.gz/MD5E-s2579665--7e4cfbffadbcf3592c65c3352134a43e.nii.gz

BNU_1/sub-0025906/ses-2/mri/mwp2sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pk/8G/MD5E-s2294643--3248eb694ddc172366aab39e76dc248e.nii.gz/MD5E-s2294643--3248eb694ddc172366aab39e76dc248e.nii.gz

BNU_1/sub-0025906/ses-2/mri/mwp3sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f5/jW/MD5E-s2487213--3f3081b1d2e600883fb1c91dc8b77f5f.nii.gz/MD5E-s2487213--3f3081b1d2e600883fb1c91dc8b77f5f.nii.gz

BNU_1/sub-0025906/ses-2/mri/neuromorphometrics_sub-0025906_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025906/ses-2/mri/neuromorphometrics_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6g/59/MD5E-s181206--274d5664bab38965c38001e813f3ae04.nii.gz/MD5E-s181206--274d5664bab38965c38001e813f3ae04.nii.gz

BNU_1/sub-0025906/ses-2/mri/p0sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4g/x5/MD5E-s761479--f342393f1120c0d746ad03b34487d0cb.nii.gz/MD5E-s761479--f342393f1120c0d746ad03b34487d0cb.nii.gz

BNU_1/sub-0025906/ses-2/mri/p1sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m5/82/MD5E-s771305--c5403c8897d728f7035dbd036deaf08a.nii.gz/MD5E-s771305--c5403c8897d728f7035dbd036deaf08a.nii.gz

BNU_1/sub-0025906/ses-2/mri/p2sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X8/fW/MD5E-s530326--00cd89abfa23468ca3ae6de7d653545a.nii.gz/MD5E-s530326--00cd89abfa23468ca3ae6de7d653545a.nii.gz

BNU_1/sub-0025906/ses-2/mri/p3sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1m/ZJ/MD5E-s474115--4c388bf7b113a7365a13dfd867d584b7.nii.gz/MD5E-s474115--4c388bf7b113a7365a13dfd867d584b7.nii.gz

BNU_1/sub-0025906/ses-2/mri/rp1sub-0025906_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025906/ses-2/mri/rp2sub-0025906_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025906/ses-2/mri/rp3sub-0025906_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w0/mZ/MD5E-s273337--687bf4d7073760d165a97951831ca9fe.nii.gz/MD5E-s273337--687bf4d7073760d165a97951831ca9fe.nii.gz

BNU_1/sub-0025906/ses-2/mri/t_sub-0025906_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025906/ses-2/mri/t_sub-0025906_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/28/w3/MD5E-s282--56a476f21333c31816c7766584a5b339.mat/MD5E-s282--56a476f21333c31816c7766584a5b339.mat

BNU_1/sub-0025906/ses-2/mri/thalamus_sub-0025906_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BNU_1/sub-0025906/ses-2/mri/thalamus_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vg/23/MD5E-s13630--313e91dc5d617f685e576c1f76b695b1.nii.gz/MD5E-s13630--313e91dc5d617f685e576c1f76b695b1.nii.gz

BNU_1/sub-0025906/ses-2/mri/wj_sub-0025906_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8J/8F/MD5E-s5530235--0d4cd78d3d7964c20bff89a95652fb4c.nii.gz/MD5E-s5530235--0d4cd78d3d7964c20bff89a95652fb4c.nii.gz

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