[DATALAD RUNCMD] Compute NYU_2/sub-0025124/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025124/ses-1/anat/sub-0025124_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025124/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025124/ses-1/label/catROI_sub-0025124_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w7/kG/MD5E-s57818--04313d2afabcbd5e693faf2a31b7a5d6.mat/MD5E-s57818--04313d2afabcbd5e693faf2a31b7a5d6.mat

NYU_2/sub-0025124/ses-1/label/catROI_sub-0025124_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xQ/0q/MD5E-s189077--bebaef9348cb6d7dd1ea0ba753849af5.xml/MD5E-s189077--bebaef9348cb6d7dd1ea0ba753849af5.xml

NYU_2/sub-0025124/ses-1/label/catROI_sub-0025124_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/J3/ZJ/MD5E-s57748--43a0c794456b89845e761b6ddc1e9413.mat/MD5E-s57748--43a0c794456b89845e761b6ddc1e9413.mat

NYU_2/sub-0025124/ses-1/label/catROI_sub-0025124_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4K/3w/MD5E-s188925--598210ae81c8e3e17e9d98e71204f20d.xml/MD5E-s188925--598210ae81c8e3e17e9d98e71204f20d.xml

NYU_2/sub-0025124/ses-1/label/catROIs_sub-0025124_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wf/4z/MD5E-s120237--450bc29928891c93dd69148547ddeecb.mat/MD5E-s120237--450bc29928891c93dd69148547ddeecb.mat

NYU_2/sub-0025124/ses-1/label/catROIs_sub-0025124_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GX/4z/MD5E-s332101--410c2aeb08faf0030d4343dbae37a452.xml/MD5E-s332101--410c2aeb08faf0030d4343dbae37a452.xml

NYU_2/sub-0025124/ses-1/label/catROIs_sub-0025124_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/q5/45/MD5E-s120176--21481f6a4ce5a5c118ca65110fcd491b.mat/MD5E-s120176--21481f6a4ce5a5c118ca65110fcd491b.mat

NYU_2/sub-0025124/ses-1/label/catROIs_sub-0025124_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3f/V5/MD5E-s332118--3fae11320eaa0a8fdf1ac272ab79a41e.xml/MD5E-s332118--3fae11320eaa0a8fdf1ac272ab79a41e.xml

NYU_2/sub-0025124/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025124_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mp/KZ/MD5E-s132605--0a72341e5a199e80cd0f68462ce91ef6.nii.gz/MD5E-s132605--0a72341e5a199e80cd0f68462ce91ef6.nii.gz

NYU_2/sub-0025124/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025124_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/x1/GV/MD5E-s132857--4ac57c1b7f019298380c5469948f8c7e.nii.gz/MD5E-s132857--4ac57c1b7f019298380c5469948f8c7e.nii.gz

NYU_2/sub-0025124/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025124_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jv/z5/MD5E-s149860--ececcef3f533905d66b225909c4e79a0.nii.gz/MD5E-s149860--ececcef3f533905d66b225909c4e79a0.nii.gz

NYU_2/sub-0025124/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025124_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Kk/KF/MD5E-s150494--be7ec17934885e195753d942b31d84dc.nii.gz/MD5E-s150494--be7ec17934885e195753d942b31d84dc.nii.gz

NYU_2/sub-0025124/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025124_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kX/63/MD5E-s199401--4d5d6c8c502607f8c111f9de2a7b0d19.nii.gz/MD5E-s199401--4d5d6c8c502607f8c111f9de2a7b0d19.nii.gz

NYU_2/sub-0025124/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025124_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/35/xP/MD5E-s200143--18c1c5112471b8465f717999050bd7f5.nii.gz/MD5E-s200143--18c1c5112471b8465f717999050bd7f5.nii.gz

NYU_2/sub-0025124/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025124_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Z/1X/MD5E-s221725--e8017b0b81208f2530bef4409c107cb4.nii.gz/MD5E-s221725--e8017b0b81208f2530bef4409c107cb4.nii.gz

NYU_2/sub-0025124/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025124_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/xG/fm/MD5E-s222823--d6334e51bc3c86001701148fed403fc6.nii.gz/MD5E-s222823--d6334e51bc3c86001701148fed403fc6.nii.gz

NYU_2/sub-0025124/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025124_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Z/3k/MD5E-s19126--d01c7af3ea5ada1d09c684736fef7000.nii.gz/MD5E-s19126--d01c7af3ea5ada1d09c684736fef7000.nii.gz

NYU_2/sub-0025124/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025124_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Xf/mV/MD5E-s19044--627a4511222e53b0633276d09d61a513.nii.gz/MD5E-s19044--627a4511222e53b0633276d09d61a513.nii.gz

NYU_2/sub-0025124/ses-1/mri/aal3_sub-0025124_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g2/6z/MD5E-s155151--34c4ee2e2bf0491a917e6e5d56553851.nii.gz/MD5E-s155151--34c4ee2e2bf0491a917e6e5d56553851.nii.gz

NYU_2/sub-0025124/ses-1/mri/aal3_sub-0025124_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/FV/Xp/MD5E-s154972--961a168dd20696985e113ed92cc798c9.nii.gz/MD5E-s154972--961a168dd20696985e113ed92cc798c9.nii.gz

NYU_2/sub-0025124/ses-1/mri/anatomy3_sub-0025124_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J4/x5/MD5E-s107233--cc1ecf07a937ab2ac91b586e97bc762b.nii.gz/MD5E-s107233--cc1ecf07a937ab2ac91b586e97bc762b.nii.gz

NYU_2/sub-0025124/ses-1/mri/anatomy3_sub-0025124_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Q7/pJ/MD5E-s106999--1f498db086115022e9692872eee0f758.nii.gz/MD5E-s106999--1f498db086115022e9692872eee0f758.nii.gz

NYU_2/sub-0025124/ses-1/mri/anon_misub-0025124_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/pK/WW/MD5E-s3690134--acf792376dd602560016b9b01dcfa918.nii.gz/MD5E-s3690134--acf792376dd602560016b9b01dcfa918.nii.gz

NYU_2/sub-0025124/ses-1/mri/anon_misub-0025124_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gw/9k/MD5E-s3684773--eff1275bdea10ac7ac9f447c8b1a62da.nii.gz/MD5E-s3684773--eff1275bdea10ac7ac9f447c8b1a62da.nii.gz

NYU_2/sub-0025124/ses-1/mri/anon_msub-0025124_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/anon_msub-0025124_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qV/Pp/MD5E-s9374901--8227921ddc57f70ed761ae5959a90e6d.nii.gz/MD5E-s9374901--8227921ddc57f70ed761ae5959a90e6d.nii.gz

NYU_2/sub-0025124/ses-1/mri/cat_sub-0025124_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MJ/Mv/MD5E-s83108--5f5a06c576035edd91ead4954f6089f7.nii.gz/MD5E-s83108--5f5a06c576035edd91ead4954f6089f7.nii.gz

NYU_2/sub-0025124/ses-1/mri/cat_sub-0025124_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/pq/MX/MD5E-s82706--1bdf9ac31e756db5b7e0f36b79cb4a37.nii.gz/MD5E-s82706--1bdf9ac31e756db5b7e0f36b79cb4a37.nii.gz

NYU_2/sub-0025124/ses-1/mri/cobra_sub-0025124_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8J/fk/MD5E-s40302--8d120cf15a847e72eb5572710a2af82d.nii.gz/MD5E-s40302--8d120cf15a847e72eb5572710a2af82d.nii.gz

NYU_2/sub-0025124/ses-1/mri/cobra_sub-0025124_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025124/ses-1/mri/hammers_sub-0025124_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/hammers_sub-0025124_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025124/ses-1/mri/ibsr_sub-0025124_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/ibsr_sub-0025124_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/it_sub-0025124_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vx/pv/MD5E-s283--fb91e3f3bd5bdc9b9fffe51b016f2490.mat/MD5E-s283--fb91e3f3bd5bdc9b9fffe51b016f2490.mat

NYU_2/sub-0025124/ses-1/mri/it_sub-0025124_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025124/ses-1/mri/it_sub-0025124_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025124/ses-1/mri/it_sub-0025124_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025124/ses-1/mri/iy_sub-0025124_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/iy_sub-0025124_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/julichbrain_sub-0025124_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/julichbrain_sub-0025124_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025124/ses-1/mri/lpba40_sub-0025124_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/lpba40_sub-0025124_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/m0wp1sub-0025124_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/m0wp1sub-0025124_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/m0wp2sub-0025124_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/m0wp2sub-0025124_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/m0wp3sub-0025124_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/m0wp3sub-0025124_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/mori_sub-0025124_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/mori_sub-0025124_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/mwp1sub-0025124_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/mwp1sub-0025124_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025124/ses-1/mri/mwp2sub-0025124_ses-1_run-1_T1w.nii.gz

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