[DATALAD RUNCMD] Compute NYU_2/sub-0025111/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025111/ses-1/anat/sub-0025111_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025111/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025111/ses-1/label/catROI_sub-0025111_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0P/G8/MD5E-s57522--80eb4a4d233e278f6aa86349873e051d.mat/MD5E-s57522--80eb4a4d233e278f6aa86349873e051d.mat

NYU_2/sub-0025111/ses-1/label/catROI_sub-0025111_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0j/75/MD5E-s189198--706b49d6d57972fd87a243d7416028fc.xml/MD5E-s189198--706b49d6d57972fd87a243d7416028fc.xml

NYU_2/sub-0025111/ses-1/label/catROI_sub-0025111_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w7/X7/MD5E-s57541--abf1058e52b67bea78f1231d1b3113f5.mat/MD5E-s57541--abf1058e52b67bea78f1231d1b3113f5.mat

NYU_2/sub-0025111/ses-1/label/catROI_sub-0025111_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7G/vx/MD5E-s189157--c46ba46472730991254b488fc019d7c0.xml/MD5E-s189157--c46ba46472730991254b488fc019d7c0.xml

NYU_2/sub-0025111/ses-1/label/catROIs_sub-0025111_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/KK/w3/MD5E-s120266--caa5a6cd8636b2b2201c6e5754903cdb.mat/MD5E-s120266--caa5a6cd8636b2b2201c6e5754903cdb.mat

NYU_2/sub-0025111/ses-1/label/catROIs_sub-0025111_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/x7/Mv/MD5E-s332153--8b51cc4401c37b1159da56d57d404709.xml/MD5E-s332153--8b51cc4401c37b1159da56d57d404709.xml

NYU_2/sub-0025111/ses-1/label/catROIs_sub-0025111_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g2/10/MD5E-s120210--f4aa7d30c47c164bd54183ba9e2cd4a3.mat/MD5E-s120210--f4aa7d30c47c164bd54183ba9e2cd4a3.mat

NYU_2/sub-0025111/ses-1/label/catROIs_sub-0025111_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K5/4X/MD5E-s332130--637ee831875e78e8ccfaefd6d4c6fc1b.xml/MD5E-s332130--637ee831875e78e8ccfaefd6d4c6fc1b.xml

NYU_2/sub-0025111/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Z8/60/MD5E-s123388--2a8cf555e520cbf18145e967628a377f.nii.gz/MD5E-s123388--2a8cf555e520cbf18145e967628a377f.nii.gz

NYU_2/sub-0025111/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025111_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p1/jM/MD5E-s123588--288a15fd755a6eb855d9ba156e45f1b4.nii.gz/MD5E-s123588--288a15fd755a6eb855d9ba156e45f1b4.nii.gz

NYU_2/sub-0025111/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Qf/VM/MD5E-s140113--28d4bae322ca35d979a5fdca37431fa0.nii.gz/MD5E-s140113--28d4bae322ca35d979a5fdca37431fa0.nii.gz

NYU_2/sub-0025111/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025111_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JK/84/MD5E-s140405--0695bd9dc3643d96b59ca17d5f698ab3.nii.gz/MD5E-s140405--0695bd9dc3643d96b59ca17d5f698ab3.nii.gz

NYU_2/sub-0025111/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/P7/PX/MD5E-s187999--30251eb7b36e3e06420604085c105fcd.nii.gz/MD5E-s187999--30251eb7b36e3e06420604085c105fcd.nii.gz

NYU_2/sub-0025111/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025111_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zf/Fp/MD5E-s187800--13d5f7306a52d6f02a088cc210d6720a.nii.gz/MD5E-s187800--13d5f7306a52d6f02a088cc210d6720a.nii.gz

NYU_2/sub-0025111/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/xW/F3/MD5E-s209832--0f826d5edda751347e5bb4df7e07011c.nii.gz/MD5E-s209832--0f826d5edda751347e5bb4df7e07011c.nii.gz

NYU_2/sub-0025111/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025111_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J6/1F/MD5E-s210119--083c8df5eb09cca54c3ebd91927b0baa.nii.gz/MD5E-s210119--083c8df5eb09cca54c3ebd91927b0baa.nii.gz

NYU_2/sub-0025111/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Jw/5p/MD5E-s18491--0d22ca4b19973674200ec1d243ac60a6.nii.gz/MD5E-s18491--0d22ca4b19973674200ec1d243ac60a6.nii.gz

NYU_2/sub-0025111/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025111_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WV/ZM/MD5E-s18773--930f5745ccce4d96662fb64eb14ef013.nii.gz/MD5E-s18773--930f5745ccce4d96662fb64eb14ef013.nii.gz

NYU_2/sub-0025111/ses-1/mri/aal3_sub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/7G/8x/MD5E-s144550--f51f3fb778800a74fd26b78f2d77bfad.nii.gz/MD5E-s144550--f51f3fb778800a74fd26b78f2d77bfad.nii.gz

NYU_2/sub-0025111/ses-1/mri/aal3_sub-0025111_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mx/Pm/MD5E-s145600--cd7068b144aba6f351a4d14156bc3146.nii.gz/MD5E-s145600--cd7068b144aba6f351a4d14156bc3146.nii.gz

NYU_2/sub-0025111/ses-1/mri/anatomy3_sub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Mq/kZ/MD5E-s100201--ba888c0209910a10c1b557cd2d9a7577.nii.gz/MD5E-s100201--ba888c0209910a10c1b557cd2d9a7577.nii.gz

NYU_2/sub-0025111/ses-1/mri/anatomy3_sub-0025111_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zZ/wz/MD5E-s100223--78dbd23fdc3d44ef9f855184b13d1ae0.nii.gz/MD5E-s100223--78dbd23fdc3d44ef9f855184b13d1ae0.nii.gz

NYU_2/sub-0025111/ses-1/mri/anon_misub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3g/gV/MD5E-s3448903--ee527e7742fb0ee207824ab58534a110.nii.gz/MD5E-s3448903--ee527e7742fb0ee207824ab58534a110.nii.gz

NYU_2/sub-0025111/ses-1/mri/anon_misub-0025111_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9v/ww/MD5E-s3467322--160f2715f748f13087ed2db4df4e7920.nii.gz/MD5E-s3467322--160f2715f748f13087ed2db4df4e7920.nii.gz

NYU_2/sub-0025111/ses-1/mri/anon_msub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gx/K7/MD5E-s9224465--aff0db72234fa1337b79da21e7ab17bc.nii.gz/MD5E-s9224465--aff0db72234fa1337b79da21e7ab17bc.nii.gz

NYU_2/sub-0025111/ses-1/mri/anon_msub-0025111_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4v/Zm/MD5E-s9112818--bf4391f754d8360cc95c23f367a30d3c.nii.gz/MD5E-s9112818--bf4391f754d8360cc95c23f367a30d3c.nii.gz

NYU_2/sub-0025111/ses-1/mri/cat_sub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/18/5K/MD5E-s75337--4fa2f76ea571a00b1f6a5df11fcd3d53.nii.gz/MD5E-s75337--4fa2f76ea571a00b1f6a5df11fcd3d53.nii.gz

NYU_2/sub-0025111/ses-1/mri/cat_sub-0025111_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/X0/MD5E-s76711--de220d96d5e60313d9740d0ae2592e44.nii.gz/MD5E-s76711--de220d96d5e60313d9740d0ae2592e44.nii.gz

NYU_2/sub-0025111/ses-1/mri/cobra_sub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/QW/79/MD5E-s35015--a9570f015b7d97aad1c788b9aaaa13ff.nii.gz/MD5E-s35015--a9570f015b7d97aad1c788b9aaaa13ff.nii.gz

NYU_2/sub-0025111/ses-1/mri/cobra_sub-0025111_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qM/kF/MD5E-s34984--9b8bf8084899c811223d1fbc637fb6a5.nii.gz/MD5E-s34984--9b8bf8084899c811223d1fbc637fb6a5.nii.gz

NYU_2/sub-0025111/ses-1/mri/hammers_sub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025111/ses-1/mri/hammers_sub-0025111_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025111/ses-1/mri/ibsr_sub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025111/ses-1/mri/ibsr_sub-0025111_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025111/ses-1/mri/it_sub-0025111_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Z3/Z0/MD5E-s283--586daa816c8e3ab3a8a15bc0afa6e371.mat/MD5E-s283--586daa816c8e3ab3a8a15bc0afa6e371.mat

NYU_2/sub-0025111/ses-1/mri/it_sub-0025111_ses-1_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025111/ses-1/mri/it_sub-0025111_ses-1_run-2_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p5/Qm/MD5E-s284--b0886bd02fcda1a938891e172bea5321.mat/MD5E-s284--b0886bd02fcda1a938891e172bea5321.mat

NYU_2/sub-0025111/ses-1/mri/it_sub-0025111_ses-1_run-2_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025111/ses-1/mri/iy_sub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025111/ses-1/mri/iy_sub-0025111_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025111/ses-1/mri/julichbrain_sub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025111/ses-1/mri/julichbrain_sub-0025111_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025111/ses-1/mri/lpba40_sub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025111/ses-1/mri/lpba40_sub-0025111_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025111/ses-1/mri/m0wp1sub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025111/ses-1/mri/m0wp1sub-0025111_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025111/ses-1/mri/m0wp2sub-0025111_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025111/ses-1/mri/m0wp2sub-0025111_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025111/ses-1/mri/m0wp3sub-0025111_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025111/ses-1/mri/m0wp3sub-0025111_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025111/ses-1/mri/mori_sub-0025111_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025111/ses-1/mri/mori_sub-0025111_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025111/ses-1/mri/mwp1sub-0025111_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025111/ses-1/mri/mwp1sub-0025111_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025111/ses-1/mri/mwp2sub-0025111_ses-1_run-1_T1w.nii.gz

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