[DATALAD RUNCMD] Compute BNU_1/sub-0025874/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025874/ses-1/anat/sub-0025874_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025874/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025874/ses-1/label/catROI_sub-0025874_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/34/9G/MD5E-s61212--92377d3be992409a4f4abfe1efd30b8f.mat/MD5E-s61212--92377d3be992409a4f4abfe1efd30b8f.mat

BNU_1/sub-0025874/ses-1/label/catROI_sub-0025874_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zx/M2/MD5E-s188696--f537b91dc4610cab44ca53a1cc00cffb.xml/MD5E-s188696--f537b91dc4610cab44ca53a1cc00cffb.xml

BNU_1/sub-0025874/ses-1/label/catROIs_sub-0025874_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p4/vx/MD5E-s119989--756038ee1f35551c02dadd01472c5abd.mat/MD5E-s119989--756038ee1f35551c02dadd01472c5abd.mat

BNU_1/sub-0025874/ses-1/label/catROIs_sub-0025874_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k8/XV/MD5E-s332096--56cee2a894883300bcd5faabed1fbed5.xml/MD5E-s332096--56cee2a894883300bcd5faabed1fbed5.xml

BNU_1/sub-0025874/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025874_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025874/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VK/gZ/MD5E-s148188--537f136c5b3f7c2674b3d0f57d76b2ec.nii.gz/MD5E-s148188--537f136c5b3f7c2674b3d0f57d76b2ec.nii.gz

BNU_1/sub-0025874/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025874_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025874/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V3/1w/MD5E-s168296--79cafef7349f3942fd97c8f8d3a38397.nii.gz/MD5E-s168296--79cafef7349f3942fd97c8f8d3a38397.nii.gz

BNU_1/sub-0025874/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025874_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025874/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wv/wX/MD5E-s224902--de26153be03963a71aa308a169c2232f.nii.gz/MD5E-s224902--de26153be03963a71aa308a169c2232f.nii.gz

BNU_1/sub-0025874/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025874_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025874/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MF/PK/MD5E-s251458--9eb7fbbd5499e2741cb83cc0b900854e.nii.gz/MD5E-s251458--9eb7fbbd5499e2741cb83cc0b900854e.nii.gz

BNU_1/sub-0025874/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025874_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025874/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8V/z6/MD5E-s21201--faafdd752cf04da99e94e1e7b0c7d9af.nii.gz/MD5E-s21201--faafdd752cf04da99e94e1e7b0c7d9af.nii.gz

BNU_1/sub-0025874/ses-1/mri/aal3_sub-0025874_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025874/ses-1/mri/aal3_sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zq/qw/MD5E-s170921--23bc90d2cb73e15d3743514ef8d8d051.nii.gz/MD5E-s170921--23bc90d2cb73e15d3743514ef8d8d051.nii.gz

BNU_1/sub-0025874/ses-1/mri/anatomy3_sub-0025874_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025874/ses-1/mri/anatomy3_sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mg/xw/MD5E-s120424--1b14135ad8a799c5d3795ba3a146a9d9.nii.gz/MD5E-s120424--1b14135ad8a799c5d3795ba3a146a9d9.nii.gz

BNU_1/sub-0025874/ses-1/mri/anon_misub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v4/7z/MD5E-s3984743--96a0b804309ad4db370b4da2ecd2295d.nii.gz/MD5E-s3984743--96a0b804309ad4db370b4da2ecd2295d.nii.gz

BNU_1/sub-0025874/ses-1/mri/anon_msub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KX/v7/MD5E-s9986593--35e1224d7566e7fc54e2b2bebff85b09.nii.gz/MD5E-s9986593--35e1224d7566e7fc54e2b2bebff85b09.nii.gz

BNU_1/sub-0025874/ses-1/mri/cat_sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0z/wW/MD5E-s89698--612cc286cecdadf5d46cd40e6d568fff.nii.gz/MD5E-s89698--612cc286cecdadf5d46cd40e6d568fff.nii.gz

BNU_1/sub-0025874/ses-1/mri/cobra_sub-0025874_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025874/ses-1/mri/cobra_sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kK/48/MD5E-s43281--6057f50e92704da578cd2af6234dfdbf.nii.gz/MD5E-s43281--6057f50e92704da578cd2af6234dfdbf.nii.gz

BNU_1/sub-0025874/ses-1/mri/hammers_sub-0025874_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025874/ses-1/mri/hammers_sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g5/zX/MD5E-s134292--91805609586613890a7bb53027f0b157.nii.gz/MD5E-s134292--91805609586613890a7bb53027f0b157.nii.gz

BNU_1/sub-0025874/ses-1/mri/ibsr_sub-0025874_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025874/ses-1/mri/ibsr_sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qq/V8/MD5E-s141891--5a89dc888df1249d7cf7fb21bad52a66.nii.gz/MD5E-s141891--5a89dc888df1249d7cf7fb21bad52a66.nii.gz

BNU_1/sub-0025874/ses-1/mri/it_sub-0025874_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4v/20/MD5E-s283--5dacba12cc486eeadced58eea06fb463.mat/MD5E-s283--5dacba12cc486eeadced58eea06fb463.mat

BNU_1/sub-0025874/ses-1/mri/it_sub-0025874_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/80/k7/MD5E-s282--6b23e304550f835a64d3fffe81190f91.mat/MD5E-s282--6b23e304550f835a64d3fffe81190f91.mat

BNU_1/sub-0025874/ses-1/mri/iy_sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W2/34/MD5E-s35974494--89fb9acf273ea4ba50951020a600d51d.nii.gz/MD5E-s35974494--89fb9acf273ea4ba50951020a600d51d.nii.gz

BNU_1/sub-0025874/ses-1/mri/julichbrain_sub-0025874_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025874/ses-1/mri/julichbrain_sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fp/56/MD5E-s179733--29bf9ade72509d4422f25d84714713ae.nii.gz/MD5E-s179733--29bf9ade72509d4422f25d84714713ae.nii.gz

BNU_1/sub-0025874/ses-1/mri/lpba40_sub-0025874_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025874/ses-1/mri/lpba40_sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/68/58/MD5E-s131912--26195a3ef696838f27269ff1ac502af0.nii.gz/MD5E-s131912--26195a3ef696838f27269ff1ac502af0.nii.gz

BNU_1/sub-0025874/ses-1/mri/m0wp1sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JJ/fQ/MD5E-s2588604--a82bbc1cb27a4f21901fb37b93f8c923.nii.gz/MD5E-s2588604--a82bbc1cb27a4f21901fb37b93f8c923.nii.gz

BNU_1/sub-0025874/ses-1/mri/m0wp2sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1Q/g6/MD5E-s2296067--fc54a7896e00c17e19c451f2a000b5b3.nii.gz/MD5E-s2296067--fc54a7896e00c17e19c451f2a000b5b3.nii.gz

BNU_1/sub-0025874/ses-1/mri/m0wp3sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fj/Mq/MD5E-s2495087--c9b590b2af81de46e582b3687dc665fc.nii.gz/MD5E-s2495087--c9b590b2af81de46e582b3687dc665fc.nii.gz

BNU_1/sub-0025874/ses-1/mri/mori_sub-0025874_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025874/ses-1/mri/mori_sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wK/f0/MD5E-s155907--36a9947a092068653a321b766297f4f8.nii.gz/MD5E-s155907--36a9947a092068653a321b766297f4f8.nii.gz

BNU_1/sub-0025874/ses-1/mri/mwp1sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xm/z2/MD5E-s2591904--616226accd09227672433f4ad5437306.nii.gz/MD5E-s2591904--616226accd09227672433f4ad5437306.nii.gz

BNU_1/sub-0025874/ses-1/mri/mwp2sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X8/VG/MD5E-s2292138--46723db09ee32177f5222f49d92f3cf8.nii.gz/MD5E-s2292138--46723db09ee32177f5222f49d92f3cf8.nii.gz

BNU_1/sub-0025874/ses-1/mri/mwp3sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ww/18/MD5E-s2492651--8e7961689aab0b086bb66a80c30c4512.nii.gz/MD5E-s2492651--8e7961689aab0b086bb66a80c30c4512.nii.gz

BNU_1/sub-0025874/ses-1/mri/neuromorphometrics_sub-0025874_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025874/ses-1/mri/neuromorphometrics_sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jk/9M/MD5E-s184385--f51c2f6a7edeffbc367d236eb5305874.nii.gz/MD5E-s184385--f51c2f6a7edeffbc367d236eb5305874.nii.gz

BNU_1/sub-0025874/ses-1/mri/p0sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3x/MX/MD5E-s782817--f1f6385b9fa056ca88607b2c989f542b.nii.gz/MD5E-s782817--f1f6385b9fa056ca88607b2c989f542b.nii.gz

BNU_1/sub-0025874/ses-1/mri/p1sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZM/xj/MD5E-s799292--1d3c77ec00b93153259d826077a9e67a.nii.gz/MD5E-s799292--1d3c77ec00b93153259d826077a9e67a.nii.gz

BNU_1/sub-0025874/ses-1/mri/p2sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kg/J5/MD5E-s545153--31b31d76b98bb4c5962ec70c7501b646.nii.gz/MD5E-s545153--31b31d76b98bb4c5962ec70c7501b646.nii.gz

BNU_1/sub-0025874/ses-1/mri/p3sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025874/ses-1/mri/rp1sub-0025874_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025874/ses-1/mri/rp2sub-0025874_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025874/ses-1/mri/rp3sub-0025874_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025874/ses-1/mri/t_sub-0025874_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025874/ses-1/mri/t_sub-0025874_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mf/K2/MD5E-s282--b66c77f9f45132e9430c7a66d7c17e1b.mat/MD5E-s282--b66c77f9f45132e9430c7a66d7c17e1b.mat

BNU_1/sub-0025874/ses-1/mri/thalamus_sub-0025874_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025874/ses-1/mri/thalamus_sub-0025874_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025874/ses-1/mri/wj_sub-0025874_ses-1_run-1_T1w.nii.gz

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